Wall clock time and date at job start Tue Mar 31 2020 16:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 N 1.46504 * 109.47054 * 184.99999 * 4 2 1 6 6 C 1.34777 * 120.00071 * 180.02562 * 5 4 2 7 7 O 1.21281 * 119.99830 * 0.02562 * 6 5 4 8 8 C 1.50692 * 120.00142 * 180.02562 * 6 5 4 9 9 S 1.81002 * 109.47076 * 179.97438 * 8 6 5 10 10 C 1.76202 * 99.99786 * 179.97438 * 9 8 6 11 11 H 1.08004 * 120.00495 * 0.02562 * 10 9 8 12 12 C 1.38800 * 120.00098 * 179.97438 * 10 9 8 13 13 N 1.31633 * 119.99583 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00303 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.46788 * 60.00479 * 14 12 10 16 16 H 1.48498 * 109.47136 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47184 * 300.00594 * 14 12 10 18 18 N 1.46901 * 109.46860 * 120.00150 * 2 1 3 19 19 C 1.46900 * 110.99890 * 274.99873 * 18 2 1 20 20 C 1.50698 * 109.47212 * 179.97438 * 19 18 2 21 21 C 1.38221 * 120.01259 * 105.00255 * 20 19 18 22 22 C 1.38225 * 120.02488 * 179.97438 * 21 20 19 23 23 C 1.38258 * 120.05064 * 0.02562 * 22 21 20 24 24 C 1.38175 * 120.02927 * 359.97438 * 23 22 21 25 25 C 1.38436 * 120.01328 * 284.72023 * 20 19 18 26 26 F 1.35096 * 120.02489 * 0.02562 * 25 20 19 27 27 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 28 28 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 30 30 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 31 31 H 1.09002 * 109.46642 * 65.00413 * 4 2 1 32 32 H 0.97000 * 119.99700 * 0.02562 * 5 4 2 33 33 H 1.09001 * 109.47456 * 300.00106 * 8 6 5 34 34 H 1.09002 * 109.47145 * 60.00200 * 8 6 5 35 35 H 0.97009 * 119.99727 * 179.97438 * 13 12 10 36 36 H 1.00901 * 111.00276 * 151.05158 * 18 2 1 37 37 H 1.09002 * 109.47391 * 300.00224 * 19 18 2 38 38 H 1.09005 * 109.47266 * 59.99895 * 19 18 2 39 39 H 1.08006 * 119.98544 * 359.95515 * 21 20 19 40 40 H 1.08000 * 119.97252 * 179.97438 * 22 21 20 41 41 H 1.08001 * 119.98651 * 179.97438 * 23 22 21 42 42 H 1.08001 * 120.01369 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 6 4.1732 -1.4284 -2.1910 7 8 3.5702 -1.8826 -3.1402 8 6 5.6750 -1.5370 -2.1303 9 16 6.2784 -2.3902 -3.6082 10 6 8.0101 -2.3772 -3.2834 11 1 8.3864 -1.9247 -2.3778 12 6 8.8908 -2.9495 -4.1908 13 7 8.4322 -3.5015 -5.2943 14 14 10.7268 -2.9351 -3.8468 15 1 10.9984 -3.6583 -2.5786 16 1 11.4446 -3.6035 -4.9618 17 1 11.1970 -1.5317 -3.7268 18 7 2.0196 -0.6925 1.1994 19 6 2.0824 0.2225 2.3469 20 6 2.5872 -0.5219 3.5561 21 6 3.8821 -0.3258 3.9978 22 6 4.3452 -1.0080 5.1072 23 6 3.5141 -1.8876 5.7758 24 6 2.2192 -2.0853 5.3361 25 6 1.7523 -1.3979 4.2283 26 9 0.4848 -1.5865 3.8005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.6055 -1.7198 -1.2951 31 1 1.7517 -0.1583 -2.1369 32 1 3.9824 -0.4628 -0.4315 33 1 6.1100 -0.5386 -2.0837 34 1 5.9630 -2.1006 -1.2429 35 1 9.0478 -3.9011 -5.9288 36 1 2.9173 -1.1205 1.0288 37 1 2.7588 1.0462 2.1183 38 1 1.0870 0.6163 2.5525 39 1 4.5325 0.3606 3.4758 40 1 5.3573 -0.8545 5.4514 41 1 3.8772 -2.4205 6.6423 42 1 1.5704 -2.7728 5.8584 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752863319.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:59:20 Heat of formation + Delta-G solvation = -84.256286 kcal Electronic energy + Delta-G solvation = -24260.616315 eV Core-core repulsion = 20472.997520 eV Total energy + Delta-G solvation = -3787.618795 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.121 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.77270 -40.81647 -40.02437 -38.37592 -35.32544 -34.57768 -33.46022 -31.50467 -31.08460 -30.37087 -27.74240 -27.01705 -25.86731 -23.67202 -22.33678 -21.83615 -21.68785 -19.86713 -18.56051 -17.99379 -17.54881 -17.35187 -17.13387 -16.87397 -16.68636 -16.50867 -16.21905 -15.87330 -15.67962 -15.09641 -14.81155 -14.55357 -14.36222 -14.23527 -14.09292 -13.77296 -13.52991 -13.27511 -13.16693 -13.14851 -12.93938 -12.85368 -12.73381 -12.60017 -12.29316 -11.98073 -11.78468 -11.71967 -11.12258 -10.99879 -10.27681 -10.19572 -9.94393 -9.58115 -9.46341 -8.66689 -8.33961 -6.12397 0.21638 0.28828 1.26579 1.44711 1.47132 1.56602 1.58587 2.21830 2.28545 2.61642 3.00206 3.16590 3.32417 3.39617 3.63799 3.72937 3.82860 3.94792 4.08952 4.18706 4.28514 4.31376 4.32749 4.43897 4.49563 4.56214 4.59102 4.62951 4.81598 4.91470 4.98428 5.00045 5.15923 5.25757 5.29135 5.39920 5.41975 5.42602 5.50604 5.92984 6.02134 6.20045 6.28491 6.40344 7.07141 7.18967 8.75025 Molecular weight = 326.12amu Principal moments of inertia in cm(-1) A = 0.012622 B = 0.002606 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.762996 B =10743.616409 C =12495.878405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.087 3.913 3 H 0.070 0.930 4 C 0.120 3.880 5 N -0.714 5.714 6 C 0.535 3.465 7 O -0.563 6.563 8 C -0.129 4.129 9 S -0.152 6.152 10 C -0.547 4.547 11 H 0.084 0.916 12 C 0.013 3.987 13 N -0.912 5.912 14 Si 0.999 3.001 15 H -0.261 1.261 16 H -0.280 1.280 17 H -0.261 1.261 18 N -0.691 5.691 19 C 0.103 3.897 20 C -0.134 4.134 21 C -0.090 4.090 22 C -0.134 4.134 23 C -0.092 4.092 24 C -0.171 4.171 25 C 0.095 3.905 26 F -0.147 7.147 27 H 0.071 0.929 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.411 0.589 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.271 0.729 36 H 0.343 0.657 37 H 0.065 0.935 38 H 0.081 0.919 39 H 0.151 0.849 40 H 0.152 0.848 41 H 0.154 0.846 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.569 10.727 25.407 29.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.022 4.022 3 H 0.088 0.912 4 C -0.004 4.004 5 N -0.369 5.369 6 C 0.321 3.679 7 O -0.441 6.441 8 C -0.280 4.280 9 S 0.075 5.925 10 C -0.694 4.694 11 H 0.102 0.898 12 C -0.192 4.192 13 N -0.549 5.549 14 Si 0.820 3.180 15 H -0.186 1.186 16 H -0.205 1.205 17 H -0.186 1.186 18 N -0.326 5.326 19 C -0.025 4.025 20 C -0.135 4.135 21 C -0.108 4.108 22 C -0.152 4.152 23 C -0.110 4.110 24 C -0.190 4.190 25 C 0.075 3.925 26 F -0.125 7.125 27 H 0.090 0.910 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.248 0.752 33 H 0.130 0.870 34 H 0.129 0.871 35 H 0.080 0.920 36 H 0.163 0.837 37 H 0.083 0.917 38 H 0.099 0.901 39 H 0.168 0.832 40 H 0.169 0.831 41 H 0.172 0.828 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -13.243 9.651 23.818 28.910 hybrid contribution 2.124 0.707 0.834 2.389 sum -11.119 10.359 24.652 28.959 Atomic orbital electron populations 1.21714 0.92780 1.02438 1.02431 1.21708 0.97186 0.96267 0.87072 0.91199 1.21600 0.78946 1.01236 0.98621 1.45735 1.07851 1.60026 1.23295 1.20073 0.88950 0.76844 0.82044 1.90703 1.70473 1.48262 1.34686 1.23367 0.94514 1.05882 1.04275 1.85622 1.05940 1.75162 1.25804 1.23178 0.91588 1.44478 1.10196 0.89772 1.26146 1.05283 0.93774 0.94004 1.70186 1.37501 1.36516 1.10648 0.84998 0.75629 0.79112 0.78226 1.18577 1.20527 1.18564 1.60509 1.34058 1.33710 1.04289 1.20850 1.01592 0.92920 0.87170 1.19998 0.95063 0.99888 0.98586 1.21308 0.93639 0.99244 0.96605 1.21567 1.01315 0.96633 0.95716 1.21378 0.92180 0.97315 1.00108 1.21429 0.98505 1.01948 0.97074 1.17868 0.79766 0.99013 0.95811 1.91471 1.37403 1.94058 1.89603 0.91041 0.92846 0.91657 0.92278 0.90998 0.75225 0.87039 0.87138 0.92008 0.83705 0.91703 0.90117 0.83173 0.83058 0.82796 0.84023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.41 71.98 0.68 -1.38 16 2 C 0.09 1.38 2.81 44.92 0.13 1.50 16 3 H 0.07 0.90 7.80 -2.39 -0.02 0.88 16 4 C 0.12 2.67 5.31 86.38 0.46 3.13 16 5 N -0.71 -17.36 4.99 -463.07 -2.31 -19.67 16 6 C 0.53 19.44 7.85 87.65 0.69 20.13 16 7 O -0.56 -26.15 15.86 -3.03 -0.05 -26.20 16 8 C -0.13 -5.00 6.16 71.23 0.44 -4.56 16 9 S -0.15 -8.43 20.57 -56.49 -1.16 -9.59 16 10 C -0.55 -30.93 9.50 67.95 0.65 -30.28 16 11 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 12 C 0.01 0.72 5.49 84.86 0.47 1.18 16 13 N -0.91 -56.01 13.22 21.65 0.29 -55.73 16 14 Si 1.00 43.11 29.55 68.60 2.03 45.13 16 15 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 16 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 17 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 18 N -0.69 -11.59 6.29 -495.56 -3.12 -14.71 16 19 C 0.10 1.43 5.30 85.56 0.45 1.89 16 20 C -0.13 -2.10 5.40 -19.82 -0.11 -2.21 16 21 C -0.09 -1.09 9.67 22.26 0.22 -0.87 16 22 C -0.13 -1.47 10.04 22.27 0.22 -1.24 16 23 C -0.09 -1.06 10.04 22.26 0.22 -0.84 16 24 C -0.17 -2.61 10.03 22.31 0.22 -2.39 16 25 C 0.10 1.78 7.25 22.38 0.16 1.95 16 26 F -0.15 -3.30 16.75 44.97 0.75 -2.55 16 27 H 0.07 0.93 8.14 -2.39 -0.02 0.92 16 28 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.06 0.91 7.45 -2.39 -0.02 0.89 16 30 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.41 7.12 7.37 -92.71 -0.68 6.44 16 33 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 34 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 35 H 0.27 15.48 8.31 -92.70 -0.77 14.71 16 36 H 0.34 5.91 6.70 -89.69 -0.60 5.31 16 37 H 0.06 0.65 7.87 -2.39 -0.02 0.63 16 38 H 0.08 1.19 7.37 -2.38 -0.02 1.17 16 39 H 0.15 1.15 8.00 -2.91 -0.02 1.13 16 40 H 0.15 0.94 8.06 -2.91 -0.02 0.92 16 41 H 0.15 0.99 8.06 -2.91 -0.02 0.96 16 42 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 Total: -1.00 -77.55 374.52 1.08 -76.47 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: -0.24 Total: 20.83 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: 4.90 Total: -13.99 kcal Atomic # 7 Polarization: -84.96 SS G_CDS: -5.14 Total: -90.10 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -0.05 Total: -26.20 kcal Atomic # 9 Polarization: -3.30 SS G_CDS: 0.75 Total: -2.55 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 16 Polarization: -8.43 SS G_CDS: -1.16 Total: -9.59 kcal Total: -77.55 1.08 -76.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752863319.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.791 kcal (2) G-P(sol) polarization free energy of solvation -77.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds