Wall clock time and date at job start Tue Mar 31 2020 16:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47087 * 2 1 4 4 N 1.46500 * 109.47213 * 240.00443 * 2 1 3 5 5 C 1.36939 * 120.00349 * 85.00025 * 4 2 1 6 6 H 1.08006 * 119.99916 * 359.97438 * 5 4 2 7 7 C 1.38809 * 120.00155 * 180.02562 * 5 4 2 8 8 N 1.31622 * 120.00019 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99790 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47213 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.46967 * 120.00264 * 9 7 5 12 12 H 1.48503 * 109.47067 * 239.99678 * 9 7 5 13 13 C 1.52996 * 109.47029 * 120.00165 * 2 1 3 14 14 C 1.53036 * 109.45810 * 60.02919 * 13 2 1 15 15 C 1.53201 * 109.31177 * 178.59949 * 14 13 2 16 16 N 1.46924 * 108.76328 * 54.65816 * 15 14 13 17 17 C 1.34772 * 120.63288 * 126.36452 * 16 15 14 18 18 O 1.21740 * 119.99945 * 175.97771 * 17 16 15 19 19 C 1.46291 * 119.99785 * 355.97115 * 17 16 15 20 20 S 1.75822 * 125.46356 * 48.98750 * 19 17 16 21 21 C 1.70600 * 91.61038 * 179.97438 * 20 19 17 22 22 C 1.33736 * 111.03401 * 359.97438 * 21 20 19 23 23 C 1.36921 * 125.46649 * 228.67302 * 19 17 16 24 24 F 1.35104 * 123.40517 * 0.02562 * 23 19 17 25 25 C 1.46932 * 118.73533 * 306.37909 * 16 15 14 26 26 C 1.53037 * 109.46251 * 299.97483 * 13 2 1 27 27 H 1.09005 * 109.47150 * 59.99978 * 1 2 3 28 28 H 1.09004 * 109.47502 * 299.99987 * 1 2 3 29 29 H 1.09005 * 109.47186 * 179.97438 * 1 2 3 30 30 H 0.97003 * 119.99911 * 265.00427 * 4 2 1 31 31 H 0.97001 * 119.99531 * 180.02562 * 8 7 5 32 32 H 1.08998 * 109.45776 * 180.02562 * 13 2 1 33 33 H 1.09002 * 109.49902 * 298.56656 * 14 13 2 34 34 H 1.09004 * 109.49962 * 58.66045 * 14 13 2 35 35 H 1.08994 * 109.59433 * 294.86571 * 15 14 13 36 36 H 1.09006 * 109.70089 * 174.50614 * 15 14 13 37 37 H 1.07994 * 124.48166 * 179.97438 * 21 20 19 38 38 H 1.08003 * 122.44734 * 179.97438 * 22 21 20 39 39 H 1.08993 * 109.58960 * 293.82773 * 25 16 15 40 40 H 1.08999 * 109.70275 * 173.46499 * 25 16 15 41 41 H 1.08998 * 109.49597 * 301.33840 * 26 13 2 42 42 H 1.08997 * 109.49735 * 61.39788 * 26 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1492 -0.0073 -2.3758 6 1 1.8919 1.0405 -2.4244 7 6 2.6114 -0.6618 -3.5093 8 7 2.9234 -1.9391 -3.4505 9 14 2.7891 0.2701 -5.1186 10 1 2.3742 1.6822 -4.9213 11 1 4.2059 0.2271 -5.5616 12 1 1.9280 -0.3586 -6.1523 13 6 2.0399 -0.7213 1.2492 14 6 1.5302 -2.1643 1.2485 15 6 2.0714 -2.8933 2.4824 16 7 1.7084 -2.1261 3.6817 17 6 1.0551 -2.7156 4.7024 18 8 0.8246 -2.0891 5.7205 19 6 0.6226 -4.1084 4.5870 20 16 1.6296 -5.4485 4.0563 21 6 0.3426 -6.5526 4.2439 22 6 -0.7609 -5.9343 4.6780 23 6 -0.6294 -4.5784 4.8805 24 9 -1.6351 -3.7912 5.3211 25 6 2.0711 -0.7037 3.7468 26 6 1.5302 0.0006 2.4986 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 2.2490 -1.6317 -1.1527 31 1 3.2468 -2.3963 -4.2426 32 1 3.1299 -0.7208 1.2492 33 1 0.4405 -2.1652 1.2738 34 1 1.8740 -2.6711 0.3468 35 1 3.1563 -2.9726 2.4137 36 1 1.6351 -3.8906 2.5407 37 1 0.4102 -7.6108 4.0392 38 1 -1.6866 -6.4603 4.8593 39 1 3.1559 -0.6044 3.7812 40 1 1.6344 -0.2536 4.6384 41 1 1.8740 1.0349 2.4868 42 1 0.4405 -0.0204 2.5118 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753274139.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:58 Heat of formation + Delta-G solvation = -32.829077 kcal Electronic energy + Delta-G solvation = -25862.904545 eV Core-core repulsion = 22077.515801 eV Total energy + Delta-G solvation = -3785.388744 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.121 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.08410 -40.30725 -38.23201 -37.42337 -35.43835 -33.01884 -31.57168 -30.59871 -29.86096 -28.17254 -25.80898 -24.90702 -23.78661 -23.24368 -22.04728 -20.66721 -19.75626 -19.00270 -18.10922 -17.28410 -17.06020 -16.62756 -15.95162 -15.56035 -15.13743 -14.90737 -14.74815 -14.44779 -14.28842 -14.04055 -13.82913 -13.53626 -13.23693 -13.07947 -12.72248 -12.64861 -12.31257 -12.11181 -11.90256 -11.68478 -11.41111 -11.36961 -11.05234 -10.87444 -10.60957 -10.36401 -10.29296 -10.19885 -10.05899 -9.74299 -9.56535 -9.23032 -8.92275 -8.70264 -8.66493 -6.96065 -5.78397 -3.05894 0.14465 0.90554 1.40629 1.92015 2.60586 2.97747 3.41847 3.48225 3.49816 3.98561 4.27780 4.57492 4.62452 4.80933 4.92360 5.02385 5.07228 5.15379 5.30286 5.35299 5.43421 5.49053 5.54066 5.61976 5.76880 5.80053 5.94717 5.95119 5.97399 6.10662 6.19076 6.24345 6.30152 6.46177 6.53015 6.66054 6.75213 6.91500 7.14927 7.23759 7.70403 7.95741 8.41380 9.52615 10.10840 10.45418 11.44675 Molecular weight = 326.12amu Principal moments of inertia in cm(-1) A = 0.017886 B = 0.003150 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.130814 B = 8886.961629 C = 9589.428450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.178 3.822 3 H 0.047 0.953 4 N -0.724 5.724 5 C -0.235 4.235 6 H 0.070 0.930 7 C -0.014 4.014 8 N -0.934 5.934 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.292 1.292 13 C -0.090 4.090 14 C -0.126 4.126 15 C 0.094 3.906 16 N -0.597 5.597 17 C 0.592 3.408 18 O -0.528 6.528 19 C -0.309 4.309 20 S 0.277 5.723 21 C -0.224 4.224 22 C -0.173 4.173 23 C 0.149 3.851 24 F -0.111 7.111 25 C 0.114 3.886 26 C -0.129 4.129 27 H 0.050 0.950 28 H 0.037 0.963 29 H 0.047 0.953 30 H 0.383 0.617 31 H 0.254 0.746 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.180 0.820 38 H 0.157 0.843 39 H 0.070 0.930 40 H 0.091 0.909 41 H 0.076 0.924 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.066 -8.926 17.344 19.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.068 3.932 3 H 0.065 0.935 4 N -0.367 5.367 5 C -0.366 4.366 6 H 0.088 0.912 7 C -0.210 4.210 8 N -0.583 5.583 9 Si 0.736 3.264 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.220 1.220 13 C -0.110 4.110 14 C -0.165 4.165 15 C -0.029 4.029 16 N -0.330 5.330 17 C 0.379 3.621 18 O -0.406 6.406 19 C -0.431 4.431 20 S 0.543 5.457 21 C -0.361 4.361 22 C -0.205 4.205 23 C 0.115 3.885 24 F -0.090 7.090 25 C -0.007 4.007 26 C -0.168 4.168 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.218 0.782 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.107 0.893 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.197 0.803 38 H 0.175 0.825 39 H 0.088 0.912 40 H 0.109 0.891 41 H 0.095 0.905 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.697 -8.575 17.286 19.370 hybrid contribution -1.667 0.188 -0.593 1.779 sum -3.364 -8.387 16.693 18.982 Atomic orbital electron populations 1.22537 0.99574 1.00834 0.99780 1.20188 0.91744 0.95212 0.86037 0.93540 1.42494 1.78143 1.10706 1.05330 1.19300 1.36000 0.93887 0.87398 0.91236 1.24701 1.02369 0.95971 0.97964 1.69658 1.51332 1.08631 1.28729 0.86156 0.77273 0.78838 0.84178 1.20616 1.21932 1.21958 1.21401 1.00426 0.94415 0.94712 1.21967 1.01372 0.96319 0.96796 1.22210 1.00784 0.95257 0.84649 1.48014 1.56308 1.11424 1.17206 1.16717 0.77918 0.84123 0.83380 1.90843 1.56151 1.64550 1.29071 1.24540 0.99593 1.00241 1.18703 1.83356 1.11090 0.92578 1.58657 1.25223 0.98387 1.06104 1.06401 1.19801 1.01737 0.92266 1.06718 1.16793 0.84242 0.88561 0.98886 1.91556 1.57689 1.73492 1.86240 1.21698 1.00054 0.79158 0.99833 1.22031 1.01656 0.99417 0.93670 0.93131 0.94380 0.93373 0.78213 0.93646 0.90893 0.91268 0.89319 0.90489 0.90000 0.80255 0.82530 0.91150 0.89112 0.90495 0.91110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.97 8.79 37.16 0.33 -2.64 16 2 C 0.18 3.34 2.72 -67.93 -0.18 3.16 16 3 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 4 N -0.72 -17.21 5.04 -53.43 -0.27 -17.48 16 5 C -0.23 -6.33 9.93 -15.06 -0.15 -6.48 16 6 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 7 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 8 N -0.93 -27.35 13.06 55.49 0.72 -26.63 16 9 Si 0.90 22.04 29.55 -169.99 -5.02 17.01 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 13 C -0.09 -1.36 2.14 -90.58 -0.19 -1.55 16 14 C -0.13 -1.82 4.81 -26.61 -0.13 -1.94 16 15 C 0.09 1.13 5.93 -3.71 -0.02 1.11 16 16 N -0.60 -7.86 2.97 -174.45 -0.52 -8.38 16 17 C 0.59 8.75 7.44 -13.03 -0.10 8.65 16 18 O -0.53 -9.45 16.54 5.15 0.09 -9.37 16 19 C -0.31 -3.85 5.36 -36.82 -0.20 -4.05 16 20 S 0.28 2.34 20.16 -107.50 -2.17 0.17 16 21 C -0.22 -1.60 10.91 29.15 0.32 -1.28 16 22 C -0.17 -1.53 10.15 -41.35 -0.42 -1.95 16 23 C 0.15 1.83 7.49 -40.25 -0.30 1.53 16 24 F -0.11 -1.58 17.23 2.25 0.04 -1.55 16 25 C 0.11 1.42 6.42 -3.71 -0.02 1.40 16 26 C -0.13 -1.67 4.97 -26.61 -0.13 -1.80 16 27 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.04 0.58 6.46 -51.93 -0.34 0.24 16 29 H 0.05 0.86 6.46 -51.93 -0.34 0.52 16 30 H 0.38 9.47 6.04 -40.82 -0.25 9.23 16 31 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 32 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.07 1.04 6.51 -51.93 -0.34 0.70 16 34 H 0.09 1.43 6.46 -51.93 -0.34 1.09 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.08 0.89 4.20 -34.39 -0.14 0.74 16 37 H 0.18 0.72 8.06 -52.49 -0.42 0.30 16 38 H 0.16 1.04 8.06 -52.48 -0.42 0.61 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.09 1.18 7.03 -51.93 -0.37 0.82 16 41 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.07 0.97 6.51 -51.93 -0.34 0.63 16 LS Contribution 349.16 15.07 5.26 5.26 Total: -1.00 -32.36 349.16 -8.53 -40.89 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -5.36 Total: 6.42 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: -1.30 Total: -6.35 kcal Atomic # 7 Polarization: -52.42 SS G_CDS: -0.06 Total: -52.48 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.09 Total: -9.37 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Atomic # 16 Polarization: 2.34 SS G_CDS: -2.17 Total: 0.17 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.36 -8.53 -40.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753274139.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.062 kcal (2) G-P(sol) polarization free energy of solvation -32.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds