Wall clock time and date at job start Tue Mar 31 2020 14:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48502 * 109.47448 * 270.00036 * 3 2 1 5 5 H 1.48501 * 109.47175 * 30.00246 * 3 2 1 6 6 H 1.48506 * 109.47415 * 150.00212 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38106 * 119.92542 * 179.72264 * 11 10 9 13 13 C 1.38304 * 120.07204 * 0.53100 * 12 11 10 14 14 C 1.50695 * 119.93307 * 179.74764 * 13 12 11 15 15 N 1.46508 * 109.47103 * 270.02170 * 14 13 12 16 16 C 1.34769 * 120.00011 * 179.97438 * 15 14 13 17 17 O 1.21584 * 120.00538 * 0.02562 * 16 15 14 18 18 N 1.34778 * 119.99808 * 179.97438 * 16 15 14 19 19 C 1.46501 * 119.99866 * 179.97438 * 18 16 15 20 20 C 1.50703 * 109.46850 * 180.02562 * 19 18 16 21 21 C 1.38239 * 120.00293 * 269.72910 * 20 19 18 22 22 C 1.38236 * 119.99833 * 179.76750 * 21 20 19 23 23 C 1.38236 * 119.99950 * 0.50816 * 22 21 20 24 24 C 1.38228 * 120.00117 * 359.74992 * 23 22 21 25 25 C 1.38239 * 120.00425 * 359.97438 * 24 23 22 26 26 C 1.38299 * 120.13445 * 359.76820 * 13 12 11 27 27 C 1.38101 * 120.07425 * 359.95492 * 26 13 12 28 28 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 29 29 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 30 30 H 1.07997 * 119.96326 * 180.27708 * 12 11 10 31 31 H 1.08998 * 109.47086 * 30.01537 * 14 13 12 32 32 H 1.08996 * 109.47192 * 150.02113 * 14 13 12 33 33 H 0.97001 * 119.99475 * 0.02562 * 15 14 13 34 34 H 0.96996 * 120.00092 * 0.02562 * 18 16 15 35 35 H 1.08994 * 109.47795 * 300.00714 * 19 18 16 36 36 H 1.09002 * 109.46877 * 60.01376 * 19 18 16 37 37 H 1.08001 * 119.99979 * 0.02562 * 21 20 19 38 38 H 1.07997 * 119.99681 * 180.23540 * 22 21 20 39 39 H 1.07998 * 119.99545 * 179.72030 * 23 22 21 40 40 H 1.08006 * 120.00252 * 179.97438 * 24 23 22 41 41 H 1.07988 * 120.00524 * 179.97438 * 25 24 23 42 42 H 1.07999 * 119.96503 * 179.97438 * 26 13 12 43 43 H 1.07992 * 120.03608 * 180.02562 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4971 2.0465 -1.4001 5 1 1.4470 2.6526 0.7001 6 1 3.5472 1.4402 0.7000 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8884 -0.3387 13 6 3.5687 -5.8202 -0.3264 14 6 4.3849 -7.0813 -0.4459 15 7 4.6433 -7.6242 0.8901 16 6 5.3595 -8.7572 1.0302 17 8 5.7915 -9.3287 0.0478 18 7 5.5976 -9.2563 2.2593 19 6 6.3756 -10.4883 2.4115 20 6 6.4961 -10.8287 3.8746 21 6 7.5613 -10.3454 4.6113 22 6 7.6691 -10.6538 5.9545 23 6 6.7175 -11.4541 6.5585 24 6 5.6553 -11.9418 5.8206 25 6 5.5443 -11.6288 4.4787 26 6 4.2024 -4.5970 -0.2043 27 6 3.4573 -3.4394 -0.0951 28 1 -0.4850 0.8400 0.0004 29 1 0.3579 -4.7892 -0.2301 30 1 1.6954 -6.8451 -0.4339 31 1 3.8358 -7.8149 -1.0361 32 1 5.3320 -6.8560 -0.9360 33 1 4.2983 -7.1684 1.6738 34 1 5.2533 -8.8002 3.0430 35 1 5.8729 -11.3024 1.8895 36 1 7.3699 -10.3446 1.9885 37 1 8.3069 -9.7234 4.1385 38 1 8.4992 -10.2730 6.5310 39 1 6.8043 -11.6987 7.6069 40 1 4.9120 -12.5675 6.2924 41 1 4.7147 -12.0102 3.9021 42 1 5.2812 -4.5470 -0.1945 43 1 3.9527 -2.4846 -0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069217841.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:44 Heat of formation + Delta-G solvation = -9.773017 kcal Electronic energy + Delta-G solvation = -25031.397118 eV Core-core repulsion = 21235.024514 eV Total energy + Delta-G solvation = -3796.372604 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.20131 -39.44697 -39.01917 -36.92440 -35.15144 -34.30820 -32.39458 -31.68406 -31.29919 -30.28236 -29.72501 -26.61164 -25.62327 -24.39959 -22.97295 -22.05471 -21.69828 -20.93330 -20.61799 -18.59016 -18.07059 -17.30913 -16.97090 -16.33251 -15.93105 -15.42240 -15.23718 -14.79273 -14.65143 -14.48091 -14.42924 -13.91506 -13.82368 -13.64894 -13.50887 -13.23145 -13.10998 -12.90233 -12.78637 -12.57693 -12.04670 -11.68352 -11.46109 -11.42151 -11.39383 -10.96595 -10.78529 -10.69514 -10.49200 -10.26336 -9.43545 -9.35183 -9.29826 -9.23898 -8.91651 -8.75624 -8.28594 -7.33361 -6.53544 -4.12382 0.83379 0.99965 2.03830 2.12922 2.86805 3.08312 3.09478 3.13721 3.24872 3.46179 3.89889 4.29439 4.31294 4.46966 4.58360 4.61522 4.73693 5.00159 5.00901 5.09013 5.16246 5.24117 5.33915 5.38900 5.45283 5.60841 5.65302 5.67167 5.82454 5.93863 6.03573 6.11220 6.12034 6.20278 6.31611 6.35385 6.56922 6.58357 6.61969 6.80175 6.89110 6.99324 7.15659 7.27808 7.34890 7.71337 7.91204 8.04523 8.62561 8.91822 9.60063 10.63982 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.017231 B = 0.001884 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.621814 B =14856.079430 C =15526.844575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.393 4.393 8 H 0.093 0.907 9 O -0.174 6.174 10 C 0.160 3.840 11 C -0.196 4.196 12 C -0.054 4.054 13 C -0.214 4.214 14 C 0.198 3.802 15 N -0.737 5.737 16 C 0.701 3.299 17 O -0.597 6.597 18 N -0.747 5.747 19 C 0.181 3.819 20 C -0.107 4.107 21 C -0.100 4.100 22 C -0.123 4.123 23 C -0.114 4.114 24 C -0.123 4.123 25 C -0.100 4.100 26 C -0.050 4.050 27 C -0.237 4.237 28 H 0.271 0.729 29 H 0.118 0.882 30 H 0.113 0.887 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.397 0.603 34 H 0.397 0.603 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.125 0.875 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.125 0.875 42 H 0.108 0.892 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.211 -19.612 10.718 25.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.469 4.469 8 H 0.111 0.889 9 O -0.076 6.076 10 C 0.106 3.894 11 C -0.215 4.215 12 C -0.072 4.072 13 C -0.215 4.215 14 C 0.075 3.925 15 N -0.392 5.392 16 C 0.401 3.599 17 O -0.476 6.476 18 N -0.403 5.403 19 C 0.057 3.943 20 C -0.108 4.108 21 C -0.118 4.118 22 C -0.141 4.141 23 C -0.132 4.132 24 C -0.141 4.141 25 C -0.118 4.118 26 C -0.069 4.069 27 C -0.257 4.257 28 H 0.081 0.919 29 H 0.136 0.864 30 H 0.131 0.869 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.231 0.769 34 H 0.230 0.770 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.142 0.858 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.143 0.857 42 H 0.126 0.874 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 12.168 -19.906 9.780 25.297 hybrid contribution 0.150 1.308 0.831 1.557 sum 12.318 -18.598 10.611 24.703 Atomic orbital electron populations 1.70033 1.06001 1.27867 1.45452 1.25324 0.95870 0.98945 0.96367 0.85691 0.78917 0.79909 0.78809 1.19783 1.20198 1.19148 1.21355 0.91865 0.80721 1.52993 0.88919 1.83977 1.34515 1.11559 1.77558 1.19443 0.90325 0.88049 0.91608 1.20215 0.99666 0.90284 1.11349 1.20542 0.92784 0.96825 0.97090 1.19225 0.93557 0.93530 1.15230 1.19827 0.98348 0.92183 0.82134 1.45512 1.57385 1.25945 1.10389 1.16016 0.79413 0.81088 0.83376 1.90911 1.57221 1.61986 1.37498 1.45171 1.59639 1.28397 1.07115 1.19974 0.96584 0.86441 0.91266 1.19941 0.96026 0.99344 0.95477 1.21152 0.97620 0.98913 0.94149 1.21192 0.99322 0.98642 0.94934 1.21237 0.94601 0.97400 0.99984 1.21192 0.98382 1.00268 0.94249 1.21150 0.98276 0.97414 0.94993 1.20650 0.98398 0.91668 0.96167 1.21162 0.93771 0.98965 1.11785 0.91880 0.86388 0.86943 0.91720 0.91763 0.76887 0.76953 0.90846 0.90845 0.85751 0.85863 0.85997 0.85860 0.85747 0.87384 0.85434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.63 13.67 55.48 0.76 -23.87 16 2 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 3 Si 0.94 20.01 29.55 -169.99 -5.02 14.98 16 4 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 7 C -0.39 -10.67 9.49 30.89 0.29 -10.38 16 8 H 0.09 2.32 5.20 -52.49 -0.27 2.04 16 9 O -0.17 -4.80 9.76 0.05 0.00 -4.80 16 10 C 0.16 3.71 6.65 -39.11 -0.26 3.45 16 11 C -0.20 -3.93 9.99 -39.39 -0.39 -4.32 16 12 C -0.05 -0.90 9.69 -39.61 -0.38 -1.28 16 13 C -0.21 -3.42 5.25 -104.58 -0.55 -3.97 16 14 C 0.20 2.81 5.80 -5.19 -0.03 2.78 16 15 N -0.74 -9.31 5.55 -66.42 -0.37 -9.68 16 16 C 0.70 9.47 8.57 -86.92 -0.74 8.73 16 17 O -0.60 -10.38 16.34 5.29 0.09 -10.30 16 18 N -0.75 -7.47 5.55 -66.42 -0.37 -7.83 16 19 C 0.18 1.65 5.80 -5.19 -0.03 1.62 16 20 C -0.11 -0.83 5.25 -104.62 -0.55 -1.38 16 21 C -0.10 -0.73 9.70 -39.58 -0.38 -1.11 16 22 C -0.12 -0.81 10.05 -39.58 -0.40 -1.21 16 23 C -0.11 -0.73 10.05 -39.59 -0.40 -1.12 16 24 C -0.12 -0.81 10.05 -39.58 -0.40 -1.21 16 25 C -0.10 -0.72 9.70 -39.58 -0.38 -1.11 16 26 C -0.05 -0.86 9.69 -39.61 -0.38 -1.25 16 27 C -0.24 -4.90 9.17 -39.39 -0.36 -5.26 16 28 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.12 2.30 8.06 -52.49 -0.42 1.87 16 30 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 31 H 0.06 0.93 8.08 -51.93 -0.42 0.51 16 32 H 0.06 0.94 8.08 -51.93 -0.42 0.52 16 33 H 0.40 4.41 8.48 -40.82 -0.35 4.06 16 34 H 0.40 3.22 8.48 -40.82 -0.35 2.87 16 35 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 36 H 0.07 0.71 8.08 -51.93 -0.42 0.29 16 37 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 38 H 0.12 0.60 8.06 -52.49 -0.42 0.17 16 39 H 0.12 0.54 8.06 -52.49 -0.42 0.12 16 40 H 0.12 0.59 8.06 -52.48 -0.42 0.17 16 41 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 42 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 43 H 0.13 2.65 5.64 -52.49 -0.30 2.36 16 LS Contribution 375.03 15.07 5.65 5.65 Total: -1.00 -32.20 375.03 -10.17 -42.37 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -5.46 Total: 9.53 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: -5.45 Total: -16.05 kcal Atomic # 7 Polarization: -41.41 SS G_CDS: 0.02 Total: -41.39 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: 0.09 Total: -15.09 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.20 -10.17 -42.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069217841.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.598 kcal (2) G-P(sol) polarization free energy of solvation -32.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds