Wall clock time and date at job start Tue Mar 31 2020 14:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48502 * 109.47448 * 270.00036 * 3 2 1 5 5 H 1.48501 * 109.47175 * 30.00246 * 3 2 1 6 6 H 1.48506 * 109.47415 * 150.00212 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38106 * 119.92542 * 179.72264 * 11 10 9 13 13 C 1.38304 * 120.07204 * 0.53100 * 12 11 10 14 14 C 1.50695 * 119.93307 * 179.74764 * 13 12 11 15 15 N 1.46508 * 109.47103 * 270.02170 * 14 13 12 16 16 C 1.34769 * 120.00011 * 179.97438 * 15 14 13 17 17 O 1.21584 * 120.00538 * 0.02562 * 16 15 14 18 18 N 1.34778 * 119.99808 * 179.97438 * 16 15 14 19 19 C 1.46501 * 119.99866 * 179.97438 * 18 16 15 20 20 C 1.50703 * 109.46850 * 180.02562 * 19 18 16 21 21 C 1.38239 * 120.00293 * 269.72910 * 20 19 18 22 22 C 1.38236 * 119.99833 * 179.76750 * 21 20 19 23 23 C 1.38236 * 119.99950 * 0.50816 * 22 21 20 24 24 C 1.38228 * 120.00117 * 359.74992 * 23 22 21 25 25 C 1.38239 * 120.00425 * 359.97438 * 24 23 22 26 26 C 1.38299 * 120.13445 * 359.76820 * 13 12 11 27 27 C 1.38101 * 120.07425 * 359.95492 * 26 13 12 28 28 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 29 29 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 30 30 H 1.07997 * 119.96326 * 180.27708 * 12 11 10 31 31 H 1.08998 * 109.47086 * 30.01537 * 14 13 12 32 32 H 1.08996 * 109.47192 * 150.02113 * 14 13 12 33 33 H 0.97001 * 119.99475 * 0.02562 * 15 14 13 34 34 H 0.96996 * 120.00092 * 0.02562 * 18 16 15 35 35 H 1.08994 * 109.47795 * 300.00714 * 19 18 16 36 36 H 1.09002 * 109.46877 * 60.01376 * 19 18 16 37 37 H 1.08001 * 119.99979 * 0.02562 * 21 20 19 38 38 H 1.07997 * 119.99681 * 180.23540 * 22 21 20 39 39 H 1.07998 * 119.99545 * 179.72030 * 23 22 21 40 40 H 1.08006 * 120.00252 * 179.97438 * 24 23 22 41 41 H 1.07988 * 120.00524 * 179.97438 * 25 24 23 42 42 H 1.07999 * 119.96503 * 179.97438 * 26 13 12 43 43 H 1.07992 * 120.03608 * 180.02562 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4971 2.0465 -1.4001 5 1 1.4470 2.6526 0.7001 6 1 3.5472 1.4402 0.7000 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8884 -0.3387 13 6 3.5687 -5.8202 -0.3264 14 6 4.3849 -7.0813 -0.4459 15 7 4.6433 -7.6242 0.8901 16 6 5.3595 -8.7572 1.0302 17 8 5.7915 -9.3287 0.0478 18 7 5.5976 -9.2563 2.2593 19 6 6.3756 -10.4883 2.4115 20 6 6.4961 -10.8287 3.8746 21 6 7.5613 -10.3454 4.6113 22 6 7.6691 -10.6538 5.9545 23 6 6.7175 -11.4541 6.5585 24 6 5.6553 -11.9418 5.8206 25 6 5.5443 -11.6288 4.4787 26 6 4.2024 -4.5970 -0.2043 27 6 3.4573 -3.4394 -0.0951 28 1 -0.4850 0.8400 0.0004 29 1 0.3579 -4.7892 -0.2301 30 1 1.6954 -6.8451 -0.4339 31 1 3.8358 -7.8149 -1.0361 32 1 5.3320 -6.8560 -0.9360 33 1 4.2983 -7.1684 1.6738 34 1 5.2533 -8.8002 3.0430 35 1 5.8729 -11.3024 1.8895 36 1 7.3699 -10.3446 1.9885 37 1 8.3069 -9.7234 4.1385 38 1 8.4992 -10.2730 6.5310 39 1 6.8043 -11.6987 7.6069 40 1 4.9120 -12.5675 6.2924 41 1 4.7147 -12.0102 3.9021 42 1 5.2812 -4.5470 -0.1945 43 1 3.9527 -2.4846 -0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069217841.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:43 Heat of formation + Delta-G solvation = -29.992753 kcal Electronic energy + Delta-G solvation = -25032.273912 eV Core-core repulsion = 21235.024514 eV Total energy + Delta-G solvation = -3797.249398 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.20932 -40.73055 -40.00411 -38.52903 -36.05429 -35.54873 -34.27560 -32.48944 -31.82535 -31.79155 -31.05377 -27.82766 -27.11129 -25.68938 -23.63980 -23.47171 -22.38016 -22.10201 -21.90881 -19.89381 -19.56459 -18.83904 -17.88139 -17.21104 -16.84756 -16.41985 -16.35835 -16.09277 -15.87728 -15.83843 -15.58065 -15.31441 -15.19149 -14.86774 -14.39449 -14.34845 -14.24339 -13.82849 -13.82370 -13.57296 -13.45031 -13.17528 -13.02475 -12.54503 -12.35737 -12.23617 -12.10670 -11.98639 -11.91340 -11.44263 -11.20140 -10.80736 -10.37072 -9.83760 -9.81403 -9.78277 -9.72448 -9.01345 -8.48270 -6.16373 0.27878 0.49619 0.55328 0.58342 1.35941 1.44164 1.52882 1.90312 2.17146 2.17975 2.78792 2.91350 3.14793 3.48648 3.52741 3.68369 3.89581 3.94876 4.04446 4.15702 4.18205 4.30287 4.39887 4.48304 4.57589 4.59823 4.66508 4.78771 4.79278 4.82161 5.04975 5.07039 5.14841 5.16273 5.27348 5.44002 5.50138 5.53512 5.54901 5.62615 5.65749 5.69442 5.76448 6.01529 6.01902 6.08956 6.16934 6.96570 7.09588 7.59116 7.75938 8.74511 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.017231 B = 0.001884 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.621814 B =14856.079430 C =15526.844575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.023 4.023 3 Si 1.018 2.982 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.252 1.252 7 C -0.413 4.413 8 H 0.104 0.896 9 O -0.229 6.229 10 C 0.123 3.877 11 C -0.205 4.205 12 C -0.043 4.043 13 C -0.181 4.181 14 C 0.204 3.796 15 N -0.730 5.730 16 C 0.701 3.299 17 O -0.636 6.636 18 N -0.732 5.732 19 C 0.185 3.815 20 C -0.114 4.114 21 C -0.109 4.109 22 C -0.130 4.130 23 C -0.118 4.118 24 C -0.130 4.130 25 C -0.109 4.109 26 C -0.045 4.045 27 C -0.244 4.244 28 H 0.273 0.727 29 H 0.115 0.885 30 H 0.147 0.853 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.407 0.593 34 H 0.408 0.592 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.129 0.871 38 H 0.140 0.860 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.130 0.870 42 H 0.139 0.861 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.440 -21.384 11.779 28.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.220 4.220 3 Si 0.837 3.163 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.175 1.175 7 C -0.489 4.489 8 H 0.121 0.879 9 O -0.135 6.135 10 C 0.072 3.928 11 C -0.224 4.224 12 C -0.061 4.061 13 C -0.182 4.182 14 C 0.080 3.920 15 N -0.386 5.386 16 C 0.401 3.599 17 O -0.518 6.518 18 N -0.388 5.388 19 C 0.061 3.939 20 C -0.115 4.115 21 C -0.127 4.127 22 C -0.148 4.148 23 C -0.136 4.136 24 C -0.147 4.147 25 C -0.127 4.127 26 C -0.063 4.063 27 C -0.263 4.263 28 H 0.082 0.918 29 H 0.133 0.867 30 H 0.165 0.835 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.243 0.757 34 H 0.244 0.756 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.147 0.853 38 H 0.158 0.842 39 H 0.159 0.841 40 H 0.158 0.842 41 H 0.148 0.852 42 H 0.157 0.843 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 14.427 -21.732 10.886 28.265 hybrid contribution -0.396 1.433 0.533 1.580 sum 14.030 -20.299 11.420 27.190 Atomic orbital electron populations 1.70177 1.08007 1.28850 1.48603 1.26588 0.96845 1.02769 0.95839 0.84592 0.77872 0.74610 0.79202 1.18951 1.19671 1.17543 1.21829 0.92568 0.81332 1.53180 0.87899 1.83947 1.36063 1.12661 1.80841 1.19997 0.91634 0.87954 0.93262 1.20448 1.00085 0.90418 1.11455 1.20884 0.93069 0.96984 0.95169 1.19490 0.93445 0.94048 1.11227 1.19713 0.98151 0.91053 0.83038 1.45245 1.57338 1.25864 1.10141 1.16091 0.79145 0.80924 0.83742 1.90893 1.58780 1.63088 1.39038 1.45073 1.58878 1.28396 1.06420 1.19958 0.95920 0.85709 0.92322 1.19820 0.96776 1.00277 0.94623 1.21293 0.97648 0.99154 0.94649 1.21454 0.99940 0.98558 0.94807 1.21552 0.94215 0.96814 1.01031 1.21456 0.98905 1.00333 0.94047 1.21294 0.98410 0.97455 0.95552 1.20943 0.99815 0.90761 0.94810 1.21246 0.93004 1.00067 1.12008 0.91810 0.86670 0.83509 0.91169 0.91422 0.75731 0.75626 0.91416 0.91457 0.85274 0.84238 0.84079 0.84209 0.85229 0.84336 0.86183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.43 13.67 21.62 0.30 -55.13 16 2 C -0.02 -1.26 5.49 84.84 0.47 -0.79 16 3 Si 1.02 41.94 29.55 68.60 2.03 43.97 16 4 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 5 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 6 H -0.25 -9.58 7.11 99.48 0.71 -8.87 16 7 C -0.41 -23.41 9.49 67.92 0.64 -22.77 16 8 H 0.10 5.32 5.20 -2.91 -0.02 5.31 16 9 O -0.23 -13.38 9.76 -22.72 -0.22 -13.60 16 10 C 0.12 5.82 6.65 22.58 0.15 5.97 16 11 C -0.20 -8.20 9.99 22.39 0.22 -7.97 16 12 C -0.04 -1.32 9.69 22.25 0.22 -1.10 16 13 C -0.18 -5.19 5.25 -19.84 -0.10 -5.29 16 14 C 0.20 5.03 5.80 85.63 0.50 5.53 16 15 N -0.73 -16.04 5.55 -482.31 -2.68 -18.72 16 16 C 0.70 17.22 8.57 179.06 1.53 18.76 16 17 O -0.64 -20.91 16.34 -3.98 -0.07 -20.97 16 18 N -0.73 -13.06 5.55 -482.30 -2.68 -15.74 16 19 C 0.18 3.11 5.80 85.63 0.50 3.61 16 20 C -0.11 -1.60 5.25 -19.86 -0.10 -1.71 16 21 C -0.11 -1.40 9.70 22.27 0.22 -1.19 16 22 C -0.13 -1.43 10.05 22.27 0.22 -1.21 16 23 C -0.12 -1.22 10.05 22.27 0.22 -0.99 16 24 C -0.13 -1.42 10.05 22.27 0.22 -1.20 16 25 C -0.11 -1.39 9.70 22.27 0.22 -1.17 16 26 C -0.04 -1.43 9.69 22.25 0.22 -1.21 16 27 C -0.24 -10.01 9.17 22.39 0.21 -9.80 16 28 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 29 H 0.12 4.59 8.06 -2.91 -0.02 4.57 16 30 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 31 H 0.07 1.74 8.08 -2.39 -0.02 1.72 16 32 H 0.07 1.71 8.08 -2.39 -0.02 1.69 16 33 H 0.41 7.57 8.48 -92.71 -0.79 6.78 16 34 H 0.41 5.59 8.48 -92.71 -0.79 4.80 16 35 H 0.07 1.23 8.08 -2.39 -0.02 1.21 16 36 H 0.07 1.23 8.08 -2.39 -0.02 1.21 16 37 H 0.13 1.46 8.06 -2.91 -0.02 1.44 16 38 H 0.14 1.01 8.06 -2.91 -0.02 0.99 16 39 H 0.14 0.85 8.06 -2.91 -0.02 0.83 16 40 H 0.14 1.00 8.06 -2.91 -0.02 0.98 16 41 H 0.13 1.44 8.06 -2.92 -0.02 1.42 16 42 H 0.14 3.63 8.06 -2.91 -0.02 3.60 16 43 H 0.12 5.04 5.64 -2.91 -0.02 5.03 16 Total: -1.00 -73.68 375.03 1.70 -71.98 By element: Atomic # 1 Polarization: 31.28 SS G_CDS: -0.52 Total: 30.76 kcal Atomic # 6 Polarization: -28.10 SS G_CDS: 5.54 Total: -22.55 kcal Atomic # 7 Polarization: -84.52 SS G_CDS: -5.06 Total: -89.58 kcal Atomic # 8 Polarization: -34.29 SS G_CDS: -0.29 Total: -34.57 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -73.68 1.70 -71.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069217841.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.986 kcal (2) G-P(sol) polarization free energy of solvation -73.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds