Wall clock time and date at job start Tue Mar 31 2020 15:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86801 * 119.99712 * 2 1 4 4 H 1.48494 * 109.47247 * 269.99744 * 3 2 1 5 5 H 1.48502 * 109.47321 * 30.00338 * 3 2 1 6 6 H 1.48505 * 109.47002 * 150.00228 * 3 2 1 7 7 C 1.38719 * 120.00116 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99858 * 0.02562 * 7 2 1 9 9 O 1.34777 * 119.99874 * 180.02562 * 7 2 1 10 10 C 1.35570 * 117.00299 * 185.05965 * 9 7 2 11 11 C 1.39177 * 119.89463 * 354.44328 * 10 9 7 12 12 C 1.37603 * 120.10350 * 180.02562 * 11 10 9 13 13 C 1.40028 * 119.89571 * 359.97438 * 12 11 10 14 14 C 1.46956 * 120.10212 * 180.02562 * 13 12 11 15 15 C 1.35019 * 120.00143 * 180.02562 * 14 13 12 16 16 C 1.46256 * 120.00230 * 179.97438 * 15 14 13 17 17 O 1.21721 * 119.99736 * 0.02562 * 16 15 14 18 18 N 1.34767 * 120.00389 * 180.27747 * 16 15 14 19 19 C 1.46504 * 120.00403 * 179.72830 * 18 16 15 20 20 C 1.52998 * 109.47000 * 179.97438 * 19 18 16 21 21 C 1.50702 * 109.46460 * 180.02562 * 20 19 18 22 22 C 1.34851 * 125.89501 * 85.00647 * 21 20 19 23 23 C 1.40888 * 107.42138 * 179.97438 * 22 21 20 24 24 C 1.34851 * 107.41736 * 359.97438 * 23 22 21 25 25 N 1.36346 * 125.88860 * 264.68833 * 21 20 19 26 26 H 0.96998 * 125.63564 * 0.02562 * 25 21 20 27 27 C 1.40025 * 119.79545 * 0.27947 * 13 12 11 28 28 C 1.37595 * 119.90066 * 359.43904 * 27 13 12 29 29 H 0.97001 * 120.00509 * 359.97438 * 1 2 3 30 30 H 1.07996 * 119.95041 * 0.02562 * 11 10 9 31 31 H 1.07993 * 120.05428 * 180.02562 * 12 11 10 32 32 H 1.07999 * 119.99623 * 0.02562 * 14 13 12 33 33 H 1.07999 * 120.00233 * 0.02562 * 15 14 13 34 34 H 0.97007 * 119.99877 * 359.72408 * 18 16 15 35 35 H 1.08993 * 109.46822 * 300.00042 * 19 18 16 36 36 H 1.09002 * 109.46751 * 59.99893 * 19 18 16 37 37 H 1.09001 * 109.47443 * 299.99566 * 20 19 18 38 38 H 1.09002 * 109.47236 * 60.00459 * 20 19 18 39 39 H 1.08001 * 126.28612 * 0.02562 * 22 21 20 40 40 H 1.07996 * 126.29274 * 179.97438 * 23 22 21 41 41 H 1.08002 * 125.89292 * 180.02562 * 24 23 22 42 42 H 1.08001 * 120.05106 * 179.70121 * 27 13 12 43 43 H 1.08005 * 119.95543 * 180.27821 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0087 -1.2013 0.0005 8 1 1.4687 -2.1366 0.0005 9 8 3.3565 -1.2013 0.0011 10 6 3.9721 -2.4045 -0.1050 11 6 3.2171 -3.5736 -0.0912 12 6 3.8375 -4.7971 -0.1980 13 6 5.2307 -4.8648 -0.3212 14 6 5.8980 -6.1691 -0.4361 15 6 7.2416 -6.2320 -0.5543 16 6 7.9057 -7.5301 -0.6681 17 8 7.2472 -8.5537 -0.6568 18 7 9.2472 -7.5931 -0.7805 19 6 9.9130 -8.8937 -0.8885 20 6 11.4243 -8.6849 -1.0041 21 6 12.1090 -10.0227 -1.1159 22 6 12.2947 -10.7233 -2.2530 23 6 12.9732 -11.9098 -1.9114 24 6 13.1768 -11.8889 -0.5786 25 7 12.6529 -10.7307 -0.0854 26 1 12.6635 -10.4568 0.8450 27 6 5.9866 -3.6861 -0.3292 28 6 5.3570 -2.4669 -0.2277 29 1 -0.4851 0.8400 0.0004 30 1 2.1426 -3.5204 0.0034 31 1 3.2509 -5.7038 -0.1877 32 1 5.3137 -7.0773 -0.4261 33 1 7.8259 -5.3238 -0.5640 34 1 9.7720 -6.7773 -0.7899 35 1 9.6948 -9.4882 -0.0014 36 1 9.5498 -9.4153 -1.7740 37 1 11.6421 -8.0904 -1.8915 38 1 11.7878 -8.1631 -0.1189 39 1 11.9816 -10.4285 -3.2437 40 1 13.2748 -12.6923 -2.5920 41 1 13.6730 -12.6554 -0.0017 42 1 7.0618 -3.7337 -0.4192 43 1 5.9388 -1.5570 -0.2383 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135860708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:52 Heat of formation + Delta-G solvation = 17.274018 kcal Electronic energy + Delta-G solvation = -24431.363670 eV Core-core repulsion = 20636.163913 eV Total energy + Delta-G solvation = -3795.199757 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.45091 -39.65804 -39.27292 -37.09433 -35.62946 -33.26517 -32.51308 -32.11985 -31.26384 -30.54098 -28.72581 -27.47954 -25.65768 -24.05092 -22.56820 -22.24995 -21.00203 -20.81168 -20.45855 -19.38921 -18.17145 -17.74321 -17.46520 -16.94482 -16.09237 -15.68921 -15.04824 -14.99015 -14.48937 -14.30508 -14.11712 -14.00615 -13.99536 -13.84342 -13.66599 -13.37549 -12.85880 -12.66336 -12.60326 -12.43108 -12.40384 -12.30373 -11.91099 -11.81352 -11.64051 -11.20825 -11.03099 -10.77521 -10.28713 -9.87885 -9.67252 -9.55851 -9.23205 -9.17743 -8.92301 -8.48070 -8.39556 -7.25377 -6.61191 -4.25029 0.97664 1.86371 2.02402 2.46449 2.66710 2.90221 3.11006 3.14956 3.22844 3.28005 3.51171 4.07948 4.41878 4.51175 4.56309 4.61365 4.62288 4.85241 4.93123 4.97520 5.08623 5.16243 5.18774 5.32529 5.41935 5.50151 5.52566 5.58677 5.69326 5.89440 5.93085 6.00316 6.01130 6.25744 6.30022 6.42135 6.51795 6.64086 6.66416 6.77690 6.91705 7.07889 7.15106 7.21355 7.40754 7.47166 7.61906 7.83213 8.27821 8.72073 9.32237 10.45056 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.043494 B = 0.001501 C = 0.001466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.615652 B =18651.321241 C =19090.919777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.067 3.933 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.258 1.258 7 C -0.392 4.392 8 H 0.111 0.889 9 O -0.202 6.202 10 C 0.173 3.827 11 C -0.230 4.230 12 C -0.037 4.037 13 C -0.190 4.190 14 C 0.036 3.964 15 C -0.279 4.279 16 C 0.555 3.445 17 O -0.556 6.556 18 N -0.736 5.736 19 C 0.127 3.873 20 C -0.061 4.061 21 C 0.016 3.984 22 C -0.190 4.190 23 C -0.201 4.201 24 C -0.015 4.015 25 N -0.557 5.557 26 H 0.413 0.587 27 C -0.045 4.045 28 C -0.199 4.199 29 H 0.283 0.717 30 H 0.137 0.863 31 H 0.117 0.883 32 H 0.124 0.876 33 H 0.124 0.876 34 H 0.400 0.600 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.075 0.925 39 H 0.135 0.865 40 H 0.135 0.865 41 H 0.163 0.837 42 H 0.120 0.880 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.174 -15.947 -0.698 28.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.182 1.182 7 C -0.467 4.467 8 H 0.128 0.872 9 O -0.105 6.105 10 C 0.119 3.881 11 C -0.249 4.249 12 C -0.055 4.055 13 C -0.191 4.191 14 C 0.016 3.984 15 C -0.300 4.300 16 C 0.347 3.653 17 O -0.436 6.436 18 N -0.388 5.388 19 C 0.002 3.998 20 C -0.099 4.099 21 C -0.096 4.096 22 C -0.215 4.215 23 C -0.226 4.226 24 C -0.146 4.146 25 N -0.152 5.152 26 H 0.249 0.751 27 C -0.064 4.064 28 C -0.219 4.219 29 H 0.094 0.906 30 H 0.155 0.845 31 H 0.135 0.865 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.234 0.766 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.111 0.889 38 H 0.093 0.907 39 H 0.153 0.847 40 H 0.153 0.847 41 H 0.180 0.820 42 H 0.138 0.862 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 23.558 -16.247 -0.519 28.622 hybrid contribution 0.442 1.091 0.409 1.247 sum 24.000 -15.156 -0.110 28.385 Atomic orbital electron populations 1.69614 1.05707 1.28994 1.45917 1.24535 0.95071 0.99079 0.95195 0.86160 0.80373 0.81115 0.79196 1.19630 1.20506 1.18217 1.20880 0.76641 0.96935 1.52254 0.87188 1.83502 1.22963 1.26210 1.77825 1.19368 0.91766 0.85355 0.91650 1.21224 1.01380 0.91674 1.10588 1.21050 0.93074 0.97079 0.94304 1.18529 0.93395 0.92011 1.15157 1.22308 0.93982 0.96317 0.85783 1.22452 0.95894 0.95738 1.15878 1.18410 0.81486 0.89997 0.75456 1.90793 1.64794 1.36871 1.51186 1.45848 1.07319 1.08984 1.76625 1.21251 0.90322 0.85572 1.02620 1.20271 0.93445 0.92324 1.03897 1.20025 1.05122 0.96474 0.88025 1.20757 1.06648 0.96581 0.97533 1.20932 1.06859 1.00088 0.94700 1.21846 1.06147 0.91129 0.95449 1.41999 1.46399 1.17315 1.09469 0.75100 1.20881 0.98511 0.91064 0.95906 1.20143 0.91808 0.98015 1.11895 0.90646 0.84496 0.86509 0.85767 0.85826 0.76589 0.91848 0.91022 0.88938 0.90669 0.84683 0.84738 0.81951 0.86239 0.86123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.84 13.96 55.48 0.77 -23.07 16 2 C 0.07 1.77 5.49 -17.51 -0.10 1.68 16 3 Si 0.91 20.50 28.62 -169.99 -4.86 15.63 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.26 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.39 -10.47 9.94 30.91 0.31 -10.16 16 8 H 0.11 2.99 5.41 -52.49 -0.28 2.71 16 9 O -0.20 -5.02 8.57 0.75 0.01 -5.02 16 10 C 0.17 3.75 6.66 -38.88 -0.26 3.49 16 11 C -0.23 -4.66 9.14 -39.46 -0.36 -5.02 16 12 C -0.04 -0.64 9.79 -39.14 -0.38 -1.02 16 13 C -0.19 -3.07 5.87 -105.03 -0.62 -3.69 16 14 C 0.04 0.52 9.45 -37.20 -0.35 0.17 16 15 C -0.28 -3.54 9.41 -37.51 -0.35 -3.90 16 16 C 0.55 7.40 7.74 -13.04 -0.10 7.30 16 17 O -0.56 -9.60 16.23 5.17 0.08 -9.52 16 18 N -0.74 -6.83 5.55 -61.76 -0.34 -7.18 16 19 C 0.13 1.10 5.66 -4.04 -0.02 1.07 16 20 C -0.06 -0.36 5.87 -27.88 -0.16 -0.52 16 21 C 0.02 0.12 6.42 -81.79 -0.52 -0.40 16 22 C -0.19 -1.62 10.76 -39.78 -0.43 -2.05 16 23 C -0.20 -1.60 10.86 -39.78 -0.43 -2.04 16 24 C -0.01 -0.10 11.94 -16.75 -0.20 -0.30 16 25 N -0.56 -3.48 6.08 -9.12 -0.06 -3.53 16 26 H 0.41 1.53 8.96 -40.82 -0.37 1.16 16 27 C -0.05 -0.71 9.40 -39.15 -0.37 -1.08 16 28 C -0.20 -3.65 9.97 -39.47 -0.39 -4.04 16 29 H 0.28 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.14 2.91 5.62 -52.49 -0.29 2.61 16 31 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 32 H 0.12 1.82 7.52 -52.49 -0.39 1.43 16 33 H 0.12 1.29 6.07 -52.49 -0.32 0.97 16 34 H 0.40 2.51 8.45 -40.82 -0.34 2.17 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 40 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 41 H 0.16 0.62 8.06 -52.49 -0.42 0.19 16 42 H 0.12 1.48 6.16 -52.49 -0.32 1.16 16 43 H 0.12 2.01 8.06 -52.48 -0.42 1.59 16 LS Contribution 374.05 15.07 5.64 5.64 Total: -1.00 -31.88 374.05 -8.77 -40.65 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -5.27 Total: 6.90 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: -4.75 Total: -20.51 kcal Atomic # 7 Polarization: -34.16 SS G_CDS: 0.38 Total: -33.78 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: 0.09 Total: -14.53 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.86 Total: 15.63 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.88 -8.77 -40.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135860708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.924 kcal (2) G-P(sol) polarization free energy of solvation -31.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds