Wall clock time and date at job start Tue Mar 31 2020 15:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86801 * 119.99712 * 2 1 4 4 H 1.48494 * 109.47247 * 269.99744 * 3 2 1 5 5 H 1.48502 * 109.47321 * 30.00338 * 3 2 1 6 6 H 1.48505 * 109.47002 * 150.00228 * 3 2 1 7 7 C 1.38719 * 120.00116 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99858 * 0.02562 * 7 2 1 9 9 O 1.34777 * 119.99874 * 180.02562 * 7 2 1 10 10 C 1.35570 * 117.00299 * 185.05965 * 9 7 2 11 11 C 1.39177 * 119.89463 * 354.44328 * 10 9 7 12 12 C 1.37603 * 120.10350 * 180.02562 * 11 10 9 13 13 C 1.40028 * 119.89571 * 359.97438 * 12 11 10 14 14 C 1.46956 * 120.10212 * 180.02562 * 13 12 11 15 15 C 1.35019 * 120.00143 * 180.02562 * 14 13 12 16 16 C 1.46256 * 120.00230 * 179.97438 * 15 14 13 17 17 O 1.21721 * 119.99736 * 0.02562 * 16 15 14 18 18 N 1.34767 * 120.00389 * 180.27747 * 16 15 14 19 19 C 1.46504 * 120.00403 * 179.72830 * 18 16 15 20 20 C 1.52998 * 109.47000 * 179.97438 * 19 18 16 21 21 C 1.50702 * 109.46460 * 180.02562 * 20 19 18 22 22 C 1.34851 * 125.89501 * 85.00647 * 21 20 19 23 23 C 1.40888 * 107.42138 * 179.97438 * 22 21 20 24 24 C 1.34851 * 107.41736 * 359.97438 * 23 22 21 25 25 N 1.36346 * 125.88860 * 264.68833 * 21 20 19 26 26 H 0.96998 * 125.63564 * 0.02562 * 25 21 20 27 27 C 1.40025 * 119.79545 * 0.27947 * 13 12 11 28 28 C 1.37595 * 119.90066 * 359.43904 * 27 13 12 29 29 H 0.97001 * 120.00509 * 359.97438 * 1 2 3 30 30 H 1.07996 * 119.95041 * 0.02562 * 11 10 9 31 31 H 1.07993 * 120.05428 * 180.02562 * 12 11 10 32 32 H 1.07999 * 119.99623 * 0.02562 * 14 13 12 33 33 H 1.07999 * 120.00233 * 0.02562 * 15 14 13 34 34 H 0.97007 * 119.99877 * 359.72408 * 18 16 15 35 35 H 1.08993 * 109.46822 * 300.00042 * 19 18 16 36 36 H 1.09002 * 109.46751 * 59.99893 * 19 18 16 37 37 H 1.09001 * 109.47443 * 299.99566 * 20 19 18 38 38 H 1.09002 * 109.47236 * 60.00459 * 20 19 18 39 39 H 1.08001 * 126.28612 * 0.02562 * 22 21 20 40 40 H 1.07996 * 126.29274 * 179.97438 * 23 22 21 41 41 H 1.08002 * 125.89292 * 180.02562 * 24 23 22 42 42 H 1.08001 * 120.05106 * 179.70121 * 27 13 12 43 43 H 1.08005 * 119.95543 * 180.27821 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0087 -1.2013 0.0005 8 1 1.4687 -2.1366 0.0005 9 8 3.3565 -1.2013 0.0011 10 6 3.9721 -2.4045 -0.1050 11 6 3.2171 -3.5736 -0.0912 12 6 3.8375 -4.7971 -0.1980 13 6 5.2307 -4.8648 -0.3212 14 6 5.8980 -6.1691 -0.4361 15 6 7.2416 -6.2320 -0.5543 16 6 7.9057 -7.5301 -0.6681 17 8 7.2472 -8.5537 -0.6568 18 7 9.2472 -7.5931 -0.7805 19 6 9.9130 -8.8937 -0.8885 20 6 11.4243 -8.6849 -1.0041 21 6 12.1090 -10.0227 -1.1159 22 6 12.2947 -10.7233 -2.2530 23 6 12.9732 -11.9098 -1.9114 24 6 13.1768 -11.8889 -0.5786 25 7 12.6529 -10.7307 -0.0854 26 1 12.6635 -10.4568 0.8450 27 6 5.9866 -3.6861 -0.3292 28 6 5.3570 -2.4669 -0.2277 29 1 -0.4851 0.8400 0.0004 30 1 2.1426 -3.5204 0.0034 31 1 3.2509 -5.7038 -0.1877 32 1 5.3137 -7.0773 -0.4261 33 1 7.8259 -5.3238 -0.5640 34 1 9.7720 -6.7773 -0.7899 35 1 9.6948 -9.4882 -0.0014 36 1 9.5498 -9.4153 -1.7740 37 1 11.6421 -8.0904 -1.8915 38 1 11.7878 -8.1631 -0.1189 39 1 11.9816 -10.4285 -3.2437 40 1 13.2748 -12.6923 -2.5920 41 1 13.6730 -12.6554 -0.0017 42 1 7.0618 -3.7337 -0.4192 43 1 5.9388 -1.5570 -0.2383 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135860708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:52 Heat of formation + Delta-G solvation = -2.779114 kcal Electronic energy + Delta-G solvation = -24432.233239 eV Core-core repulsion = 20636.163913 eV Total energy + Delta-G solvation = -3796.069326 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.96277 -40.99794 -40.57859 -38.60784 -36.49550 -34.75922 -34.19616 -32.88012 -31.99526 -31.78826 -29.99945 -28.29900 -27.36092 -25.03782 -23.84410 -23.47941 -22.04400 -21.47515 -21.06232 -20.63336 -19.69944 -19.14816 -18.53680 -17.89012 -17.08682 -16.57988 -16.48957 -16.35806 -15.79135 -15.61019 -15.49014 -15.11598 -15.06740 -14.66797 -14.42702 -14.38282 -14.25182 -14.08766 -14.03915 -13.38982 -13.23156 -13.12593 -13.01754 -12.89147 -12.72386 -12.61828 -12.35105 -12.19718 -11.93430 -11.30308 -11.15311 -11.02243 -10.67239 -10.09684 -9.90968 -9.73886 -8.93248 -8.73228 -8.53353 -6.25280 -0.27237 0.55875 1.11306 1.32743 1.32920 1.37794 1.52661 2.07250 2.26526 2.27447 2.36555 2.58396 2.80883 3.01233 3.15936 3.77768 3.93101 4.02204 4.04321 4.06335 4.09853 4.30850 4.35521 4.46370 4.46923 4.56406 4.62636 4.64528 4.74993 4.84742 4.95466 5.02974 5.13197 5.22314 5.29047 5.36041 5.40074 5.45733 5.46375 5.59496 5.71059 5.80712 5.84136 6.09414 6.15184 6.23446 6.61928 6.79828 6.81612 7.30113 7.51060 8.57527 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.043494 B = 0.001501 C = 0.001466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.615652 B =18651.321241 C =19090.919777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.013 3.987 3 Si 0.972 3.028 4 H -0.265 1.265 5 H -0.268 1.268 6 H -0.259 1.259 7 C -0.405 4.405 8 H 0.083 0.917 9 O -0.233 6.233 10 C 0.135 3.865 11 C -0.244 4.244 12 C -0.047 4.047 13 C -0.160 4.160 14 C 0.008 3.992 15 C -0.236 4.236 16 C 0.546 3.454 17 O -0.599 6.599 18 N -0.712 5.712 19 C 0.129 3.871 20 C -0.048 4.048 21 C 0.008 3.992 22 C -0.218 4.218 23 C -0.230 4.230 24 C -0.013 4.013 25 N -0.552 5.552 26 H 0.425 0.575 27 C -0.039 4.039 28 C -0.193 4.193 29 H 0.286 0.714 30 H 0.112 0.888 31 H 0.137 0.863 32 H 0.119 0.881 33 H 0.161 0.839 34 H 0.420 0.580 35 H 0.051 0.949 36 H 0.053 0.947 37 H 0.106 0.894 38 H 0.098 0.902 39 H 0.134 0.866 40 H 0.140 0.860 41 H 0.190 0.810 42 H 0.169 0.831 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.059 -16.627 -0.476 33.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.186 4.186 3 Si 0.793 3.207 4 H -0.190 1.190 5 H -0.193 1.193 6 H -0.183 1.183 7 C -0.481 4.481 8 H 0.101 0.899 9 O -0.139 6.139 10 C 0.085 3.915 11 C -0.263 4.263 12 C -0.065 4.065 13 C -0.160 4.160 14 C -0.012 4.012 15 C -0.256 4.256 16 C 0.338 3.662 17 O -0.482 6.482 18 N -0.364 5.364 19 C 0.005 3.995 20 C -0.086 4.086 21 C -0.106 4.106 22 C -0.242 4.242 23 C -0.254 4.254 24 C -0.144 4.144 25 N -0.148 5.148 26 H 0.264 0.736 27 C -0.057 4.057 28 C -0.212 4.212 29 H 0.096 0.904 30 H 0.130 0.870 31 H 0.155 0.845 32 H 0.137 0.863 33 H 0.178 0.822 34 H 0.258 0.742 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.124 0.876 38 H 0.116 0.884 39 H 0.152 0.848 40 H 0.157 0.843 41 H 0.207 0.793 42 H 0.187 0.813 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 28.528 -16.954 -0.290 33.187 hybrid contribution -0.625 0.718 0.284 0.993 sum 27.903 -16.236 -0.006 32.283 Atomic orbital electron populations 1.69703 1.07073 1.29856 1.49095 1.25326 0.95858 1.02303 0.95150 0.85205 0.78922 0.77156 0.79392 1.18966 1.19297 1.18297 1.20756 0.77974 0.96285 1.53042 0.89935 1.83457 1.21395 1.27557 1.81524 1.19958 0.93431 0.84913 0.93238 1.21216 1.00498 0.92983 1.11579 1.21288 0.94339 0.96586 0.94337 1.18820 0.92780 0.93285 1.11159 1.22162 0.94890 0.95143 0.89009 1.22802 0.95337 0.96781 1.10689 1.18618 0.82642 0.89580 0.75399 1.90798 1.66045 1.38307 1.53051 1.45688 1.06171 1.10318 1.74245 1.21233 0.92152 0.84858 1.01243 1.20203 0.90880 0.91868 1.05656 1.20227 1.05206 0.97099 0.88034 1.20998 1.07632 0.97411 0.98205 1.21206 1.07892 1.00524 0.95822 1.22299 1.05291 0.91509 0.95320 1.42070 1.45727 1.17007 1.10014 0.73611 1.21370 1.00795 0.89428 0.94065 1.20508 0.90242 1.00070 1.10369 0.90388 0.86999 0.84540 0.86298 0.82185 0.74240 0.93011 0.92812 0.87597 0.88371 0.84771 0.84254 0.79326 0.81336 0.84218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.51 13.96 21.62 0.30 -53.21 16 2 C 0.01 0.73 5.49 84.86 0.47 1.20 16 3 Si 0.97 43.60 28.62 68.60 1.96 45.56 16 4 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 5 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 6 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 7 C -0.40 -23.08 9.94 67.94 0.68 -22.41 16 8 H 0.08 4.96 5.41 -2.91 -0.02 4.94 16 9 O -0.23 -12.07 8.57 -20.22 -0.17 -12.24 16 10 C 0.14 5.96 6.66 22.72 0.15 6.11 16 11 C -0.24 -10.31 9.14 22.35 0.20 -10.11 16 12 C -0.05 -1.61 9.79 22.55 0.22 -1.39 16 13 C -0.16 -4.65 5.87 -20.13 -0.12 -4.77 16 14 C 0.01 0.20 9.45 23.81 0.23 0.42 16 15 C -0.24 -4.72 9.41 23.61 0.22 -4.50 16 16 C 0.55 12.41 7.74 86.33 0.67 13.08 16 17 O -0.60 -19.35 16.23 -4.42 -0.07 -19.42 16 18 N -0.71 -10.03 5.55 -467.51 -2.60 -12.63 16 19 C 0.13 1.86 5.66 86.38 0.49 2.35 16 20 C -0.05 -0.38 5.87 29.85 0.18 -0.21 16 21 C 0.01 0.10 6.42 41.08 0.26 0.36 16 22 C -0.22 -3.46 10.76 22.14 0.24 -3.22 16 23 C -0.23 -3.42 10.86 22.14 0.24 -3.18 16 24 C -0.01 -0.14 11.94 83.21 0.99 0.85 16 25 N -0.55 -5.47 6.08 -182.76 -1.11 -6.58 16 26 H 0.43 1.84 8.96 -92.71 -0.83 1.01 16 27 C -0.04 -1.05 9.40 22.55 0.21 -0.84 16 28 C -0.19 -6.60 9.97 22.34 0.22 -6.38 16 29 H 0.29 15.28 8.31 -92.71 -0.77 14.51 16 30 H 0.11 5.24 5.62 -2.91 -0.02 5.23 16 31 H 0.14 4.00 8.06 -2.91 -0.02 3.98 16 32 H 0.12 3.21 7.52 -2.91 -0.02 3.19 16 33 H 0.16 2.05 6.07 -2.91 -0.02 2.03 16 34 H 0.42 2.76 8.45 -92.70 -0.78 1.97 16 35 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.10 0.38 8.14 -2.39 -0.02 0.37 16 39 H 0.13 1.98 8.06 -2.91 -0.02 1.96 16 40 H 0.14 1.76 8.06 -2.91 -0.02 1.73 16 41 H 0.19 0.91 8.06 -2.91 -0.02 0.88 16 42 H 0.17 2.88 6.16 -2.91 -0.02 2.86 16 43 H 0.14 4.22 8.06 -2.91 -0.02 4.20 16 Total: -1.00 -75.20 374.05 3.31 -71.89 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -0.55 Total: 19.25 kcal Atomic # 6 Polarization: -38.16 SS G_CDS: 5.55 Total: -32.62 kcal Atomic # 7 Polarization: -69.01 SS G_CDS: -3.40 Total: -72.41 kcal Atomic # 8 Polarization: -31.42 SS G_CDS: -0.25 Total: -31.66 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 1.96 Total: 45.56 kcal Total: -75.20 3.31 -71.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135860708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.106 kcal (2) G-P(sol) polarization free energy of solvation -75.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds