Wall clock time and date at job start Tue Mar 31 2020 14:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 O 1.42902 * 109.47168 * 3.12830 * 3 2 1 5 5 C 1.35742 * 116.99812 * 180.02562 * 4 3 2 6 6 C 1.39021 * 119.88286 * 180.02562 * 5 4 3 7 7 C 1.37670 * 120.11293 * 180.02562 * 6 5 4 8 8 C 1.39969 * 119.88093 * 359.96774 * 7 6 5 9 9 C 1.47002 * 120.10859 * 180.02562 * 8 7 6 10 10 C 1.34971 * 120.00054 * 137.81514 * 9 8 7 11 11 C 1.46262 * 119.99847 * 345.90426 * 10 9 8 12 12 O 1.21715 * 119.99932 * 353.47911 * 11 10 9 13 13 N 1.34774 * 119.99738 * 173.48406 * 11 10 9 14 14 C 1.46501 * 120.00006 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47423 * 175.13633 * 14 13 11 16 16 C 1.50695 * 115.55097 * 54.99464 * 15 14 13 17 17 H 1.08000 * 120.00342 * 273.89456 * 16 15 14 18 18 C 1.37876 * 120.00115 * 93.88699 * 16 15 14 19 19 N 1.31517 * 120.00008 * 4.67808 * 18 16 15 20 20 Si 1.86802 * 120.00370 * 184.68173 * 18 16 15 21 21 H 1.48502 * 109.46971 * 59.99941 * 20 18 16 22 22 H 1.48499 * 109.46985 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.46816 * 300.00185 * 20 18 16 24 24 C 1.52998 * 117.49717 * 269.32710 * 15 14 13 25 25 C 1.52996 * 117.50026 * 200.66739 * 15 14 13 26 26 C 1.39970 * 119.77877 * 0.28292 * 8 7 6 27 27 C 1.37665 * 119.88183 * 359.46365 * 26 8 7 28 28 H 1.09006 * 109.47238 * 243.13275 * 3 2 1 29 29 H 1.08996 * 109.47066 * 123.13039 * 3 2 1 30 30 H 1.07998 * 119.94699 * 359.97062 * 6 5 4 31 31 H 1.08000 * 120.05405 * 180.02562 * 7 6 5 32 32 H 1.08002 * 120.00037 * 317.81167 * 9 8 7 33 33 H 1.08005 * 120.00336 * 165.89684 * 10 9 8 34 34 H 0.96999 * 120.00341 * 359.97438 * 13 11 10 35 35 H 1.09002 * 109.47107 * 295.13651 * 14 13 11 36 36 H 1.09001 * 109.46863 * 55.13145 * 14 13 11 37 37 H 0.96998 * 120.00570 * 185.00025 * 19 18 16 38 38 H 1.09002 * 117.49941 * 359.97438 * 24 15 14 39 39 H 1.08999 * 117.50122 * 145.02408 * 24 15 14 40 40 H 1.09000 * 117.49929 * 214.98296 * 25 15 14 41 41 H 1.09005 * 117.49815 * 359.97176 * 25 15 14 42 42 H 1.07998 * 120.05613 * 179.69415 * 26 8 7 43 43 H 1.08002 * 119.94227 * 180.23092 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 8 3.0849 -1.3444 -0.0735 5 6 4.4307 -1.5214 -0.0827 6 6 4.9601 -2.8049 -0.1534 7 6 6.3243 -2.9899 -0.1624 8 6 7.1785 -1.8828 -0.1010 9 6 8.6360 -2.0745 -0.1109 10 6 9.4185 -1.2619 -0.8519 11 6 8.8203 -0.4021 -1.8728 12 8 7.6365 -0.5039 -2.1368 13 7 9.5800 0.5029 -2.5211 14 6 8.9810 1.3637 -3.5440 15 6 10.0209 2.3736 -4.0336 16 6 11.3106 1.7834 -4.5428 17 1 12.1112 1.5592 -3.8534 18 6 11.4686 1.5294 -5.8887 19 7 10.5315 1.8863 -6.7397 20 14 13.0135 0.6781 -6.5037 21 1 13.1267 -0.6603 -5.8703 22 1 12.9391 0.5226 -7.9786 23 1 14.2025 1.4949 -6.1508 24 6 10.0976 3.7175 -3.3064 25 6 9.5067 3.6425 -4.7164 26 6 6.6404 -0.5929 -0.0247 27 6 5.2749 -0.4185 -0.0215 28 1 2.9712 0.4653 0.9168 29 1 2.9711 0.5625 -0.8606 30 1 4.3001 -3.6585 -0.2003 31 1 6.7345 -3.9874 -0.2178 32 1 9.0806 -2.8656 0.4747 33 1 10.4864 -1.2465 -0.6910 34 1 10.5233 0.5842 -2.3105 35 1 8.6453 0.7528 -4.3820 36 1 8.1301 1.8957 -3.1184 37 1 10.6083 1.6437 -7.6757 38 1 9.4069 3.8823 -2.4794 39 1 11.0808 4.1750 -3.1966 40 1 10.1013 4.0506 -5.5337 41 1 8.4274 3.7577 -4.8172 42 1 7.2954 0.2642 0.0279 43 1 4.8586 0.5765 0.0336 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493650607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:09 Heat of formation + Delta-G solvation = 36.621015 kcal Electronic energy + Delta-G solvation = -26134.848030 eV Core-core repulsion = 22340.487222 eV Total energy + Delta-G solvation = -3794.360808 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.42772 -39.34648 -37.79336 -36.79309 -36.50925 -33.48544 -33.21192 -31.97321 -31.12151 -29.89530 -28.32482 -26.49960 -25.35913 -23.42801 -22.65156 -21.34045 -20.98737 -19.63917 -18.80576 -18.56221 -18.48344 -16.97478 -16.57922 -16.25283 -15.67209 -15.30438 -14.91024 -14.64037 -14.50796 -14.22226 -14.00942 -13.83202 -13.59150 -13.48676 -13.27999 -13.15924 -12.86595 -12.57871 -12.51183 -12.32883 -11.92212 -11.66264 -11.55095 -11.26658 -11.05085 -10.95743 -10.91656 -10.58443 -10.22255 -9.63781 -9.54433 -9.37148 -9.14009 -8.90822 -8.47923 -8.28994 -8.05458 -7.71888 -6.12567 -4.23061 0.82375 1.46943 1.80879 1.95917 2.29225 3.06365 3.23136 3.29582 3.30513 3.72130 3.74773 3.86914 3.96519 4.31275 4.54757 4.68967 4.80379 4.82921 4.86735 5.13271 5.16602 5.31638 5.34944 5.39247 5.51076 5.68892 5.96670 6.01435 6.06091 6.18923 6.29586 6.31819 6.43141 6.48839 6.49690 6.65684 6.68001 6.70573 6.83212 7.00528 7.11523 7.20485 7.24842 7.33988 7.59734 7.74387 8.28083 8.30031 8.78531 8.86343 9.44502 10.93990 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.014458 B = 0.002709 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.175994 B =10333.799678 C =11418.376453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C 0.213 3.787 3 C 0.158 3.842 4 O -0.311 6.311 5 C 0.131 3.869 6 C -0.158 4.158 7 C -0.063 4.063 8 C -0.091 4.091 9 C -0.039 4.039 10 C -0.200 4.200 11 C 0.525 3.475 12 O -0.548 6.548 13 N -0.694 5.694 14 C 0.164 3.836 15 C 0.018 3.982 16 C -0.500 4.500 17 H 0.059 0.941 18 C 0.074 3.926 19 N -0.874 5.874 20 Si 0.889 3.111 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 C -0.213 4.213 25 C -0.135 4.135 26 C 0.004 3.996 27 C -0.214 4.214 28 H 0.111 0.889 29 H 0.113 0.887 30 H 0.128 0.872 31 H 0.128 0.872 32 H 0.132 0.868 33 H 0.131 0.869 34 H 0.403 0.597 35 H 0.061 0.939 36 H 0.041 0.959 37 H 0.262 0.738 38 H 0.062 0.938 39 H 0.077 0.923 40 H 0.093 0.907 41 H 0.061 0.939 42 H 0.119 0.881 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.025 -5.681 15.613 17.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.080 5.080 2 C -0.106 4.106 3 C 0.080 3.920 4 O -0.224 6.224 5 C 0.087 3.913 6 C -0.177 4.177 7 C -0.082 4.082 8 C -0.091 4.091 9 C -0.059 4.059 10 C -0.221 4.221 11 C 0.313 3.687 12 O -0.429 6.429 13 N -0.341 5.341 14 C 0.041 3.959 15 C 0.017 3.983 16 C -0.538 4.538 17 H 0.077 0.923 18 C -0.130 4.130 19 N -0.510 5.510 20 Si 0.717 3.283 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.251 4.251 25 C -0.173 4.173 26 C -0.014 4.014 27 C -0.232 4.232 28 H 0.128 0.872 29 H 0.130 0.870 30 H 0.146 0.854 31 H 0.146 0.854 32 H 0.149 0.851 33 H 0.149 0.851 34 H 0.237 0.763 35 H 0.080 0.920 36 H 0.059 0.941 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.111 0.889 41 H 0.079 0.921 42 H 0.137 0.863 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -8.695 -5.798 15.148 18.403 hybrid contribution 1.939 -0.224 -0.635 2.052 sum -6.757 -6.023 14.513 17.104 Atomic orbital electron populations 1.81248 1.12473 1.05642 1.08680 1.28405 0.94275 0.94557 0.93314 1.19760 0.81790 0.84970 1.05499 1.85983 1.20846 1.26264 1.89335 1.18944 0.80305 0.94540 0.97527 1.20142 0.95077 0.94366 1.08135 1.20960 0.91895 0.98171 0.97132 1.18793 0.92785 0.93277 1.04280 1.22214 0.91960 0.95921 0.95779 1.23181 1.00580 1.00096 0.98260 1.18393 0.86726 0.80774 0.82857 1.90832 1.15318 1.69555 1.67237 1.45997 1.13383 1.35998 1.38754 1.20952 0.94259 0.91797 0.88903 1.19050 0.95645 0.85156 0.98415 1.20276 0.98226 1.43175 0.92094 0.92304 1.24984 0.96388 0.94890 0.96738 1.69996 1.34012 1.43554 1.03435 0.86717 0.83584 0.80220 0.77828 1.20167 1.21271 1.20196 1.23089 1.00726 1.06074 0.95186 1.22436 0.97603 1.03470 0.93799 1.20885 0.93894 0.95905 0.90766 1.21003 0.94398 0.97455 1.10383 0.87184 0.86952 0.85441 0.85429 0.85054 0.85149 0.76257 0.92025 0.94105 0.92797 0.91936 0.90476 0.88890 0.92050 0.86286 0.85485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -4.86 18.54 42.15 0.78 -4.08 16 2 C 0.21 1.99 15.82 -20.76 -0.33 1.66 16 3 C 0.16 1.08 5.21 34.37 0.18 1.26 16 4 O -0.31 -3.18 10.08 -18.93 -0.19 -3.37 16 5 C 0.13 1.48 6.70 -39.00 -0.26 1.22 16 6 C -0.16 -1.78 9.97 -39.50 -0.39 -2.18 16 7 C -0.06 -0.71 9.79 -39.14 -0.38 -1.09 16 8 C -0.09 -1.13 4.51 -105.05 -0.47 -1.60 16 9 C -0.04 -0.42 9.80 -37.19 -0.36 -0.79 16 10 C -0.20 -2.50 9.86 -37.52 -0.37 -2.87 16 11 C 0.52 8.80 6.74 -13.04 -0.09 8.71 16 12 O -0.55 -10.54 12.40 5.18 0.06 -10.48 16 13 N -0.69 -12.48 5.41 -61.75 -0.33 -12.81 16 14 C 0.16 3.47 5.57 -4.04 -0.02 3.45 16 15 C 0.02 0.41 1.78 -155.66 -0.28 0.13 16 16 C -0.50 -12.36 8.15 -34.44 -0.28 -12.64 16 17 H 0.06 1.41 7.82 -52.49 -0.41 1.00 16 18 C 0.07 1.91 5.41 -17.82 -0.10 1.81 16 19 N -0.87 -23.61 11.87 55.43 0.66 -22.95 16 20 Si 0.89 19.97 29.54 -169.99 -5.02 14.95 16 21 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 22 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 24 C -0.21 -4.33 9.93 -26.70 -0.27 -4.59 16 25 C -0.14 -3.03 8.88 -26.70 -0.24 -3.27 16 26 C 0.00 0.05 6.70 -39.14 -0.26 -0.21 16 27 C -0.21 -2.40 9.01 -39.50 -0.36 -2.75 16 28 H 0.11 0.44 7.65 -51.93 -0.40 0.04 16 29 H 0.11 0.61 7.65 -51.93 -0.40 0.22 16 30 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 31 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 32 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 33 H 0.13 1.30 8.06 -52.48 -0.42 0.87 16 34 H 0.40 6.77 7.94 -40.82 -0.32 6.44 16 35 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 36 H 0.04 0.84 8.09 -51.93 -0.42 0.42 16 37 H 0.26 6.86 8.32 -40.82 -0.34 6.52 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 39 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 40 H 0.09 2.29 7.60 -51.93 -0.39 1.90 16 41 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.12 1.56 7.07 -52.49 -0.37 1.19 16 43 H 0.13 1.07 6.27 -52.49 -0.33 0.74 16 LS Contribution 376.18 15.07 5.67 5.67 Total: -1.00 -31.00 376.18 -8.22 -39.21 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -5.56 Total: 7.60 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: -4.28 Total: -13.76 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: 1.11 Total: -39.84 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: -0.13 Total: -13.84 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.00 -8.22 -39.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493650607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.833 kcal (2) G-P(sol) polarization free energy of solvation -30.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds