Wall clock time and date at job start Tue Mar 31 2020 15:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38639 * 120.31964 * 2 1 4 4 C 1.38578 * 118.48739 * 179.97438 * 3 2 1 5 5 C 1.39337 * 119.05910 * 0.02562 * 4 3 2 6 6 C 1.48130 * 119.72280 * 179.97438 * 5 4 3 7 7 O 1.21531 * 120.00016 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00051 * 180.02562 * 6 5 4 9 9 C 1.39818 * 120.00264 * 175.38337 * 8 6 5 10 10 C 1.38952 * 120.04815 * 214.82724 * 9 8 6 11 11 C 1.38116 * 120.04067 * 179.75034 * 10 9 8 12 12 C 1.38220 * 120.12345 * 0.54741 * 11 10 9 13 13 C 1.38767 * 120.09072 * 359.70693 * 12 11 10 14 14 O 1.35895 * 120.01944 * 179.97438 * 13 12 11 15 15 C 1.42901 * 117.00319 * 0.02562 * 14 13 12 16 16 C 1.52996 * 109.47520 * 179.97438 * 15 14 13 17 17 C 1.50703 * 109.47304 * 179.97438 * 16 15 14 18 18 H 1.08000 * 119.99888 * 0.02562 * 17 16 15 19 19 C 1.37870 * 120.00205 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00407 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 120.00147 * 0.02562 * 19 17 16 22 22 H 1.48502 * 109.47188 * 89.99496 * 21 19 17 23 23 H 1.48493 * 109.47582 * 209.99952 * 21 19 17 24 24 H 1.48505 * 109.46970 * 330.00202 * 21 19 17 25 25 C 1.38617 * 119.96171 * 0.02562 * 13 12 11 26 26 N 1.32726 * 120.54904 * 0.02562 * 5 4 3 27 27 C 1.31525 * 121.64307 * 359.97438 * 26 5 4 28 28 H 1.09002 * 109.47291 * 270.00085 * 1 2 3 29 29 H 1.08999 * 109.47355 * 29.99611 * 1 2 3 30 30 H 1.08997 * 109.47040 * 150.00286 * 1 2 3 31 31 H 1.07997 * 120.75220 * 359.97438 * 3 2 1 32 32 H 1.07998 * 120.47311 * 180.29150 * 4 3 2 33 33 H 0.97001 * 119.99451 * 355.38552 * 8 6 5 34 34 H 1.08004 * 119.97838 * 0.02562 * 10 9 8 35 35 H 1.07997 * 119.93882 * 180.25349 * 11 10 9 36 36 H 1.08002 * 119.95451 * 179.72352 * 12 11 10 37 37 H 1.09003 * 109.47061 * 299.99957 * 15 14 13 38 38 H 1.09001 * 109.47055 * 59.99643 * 15 14 13 39 39 H 1.08997 * 109.47265 * 299.99765 * 16 15 14 40 40 H 1.09001 * 109.46951 * 59.99943 * 16 15 14 41 41 H 0.96993 * 120.00736 * 180.02562 * 20 19 17 42 42 H 1.07995 * 120.06479 * 180.02562 * 25 13 12 43 43 H 1.07997 * 119.54563 * 179.97438 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1968 0.0000 4 6 3.5919 1.1525 0.0005 5 6 4.2294 -0.0865 0.0005 6 6 5.7093 -0.1510 0.0005 7 8 6.3622 0.8740 0.0010 8 7 6.3317 -1.3465 0.0000 9 6 7.7251 -1.4092 -0.0975 10 6 8.3279 -2.4513 -0.7914 11 6 9.7041 -2.5103 -0.8919 12 6 10.4856 -1.5399 -0.2935 13 6 9.8894 -0.4997 0.4052 14 8 10.6592 0.4533 0.9935 15 6 12.0751 0.3223 0.8519 16 6 12.7691 1.4786 1.5744 17 6 14.2624 1.3400 1.4255 18 1 14.6751 0.5104 0.8707 19 6 15.1016 2.2728 1.9967 20 7 16.4048 2.1517 1.8673 21 14 14.3879 3.7082 2.9559 22 1 14.2456 3.3273 4.3841 23 1 15.2950 4.8785 2.8437 24 1 13.0555 4.0597 2.4023 25 6 8.5083 -0.4339 0.5038 26 7 3.5217 -1.2094 -0.0005 27 6 2.2065 -1.1960 -0.0011 28 1 -0.3634 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6845 2.1420 -0.0004 32 1 4.1691 2.0653 0.0053 33 1 5.8130 -2.1633 0.0672 34 1 7.7196 -3.2132 -1.2562 35 1 10.1707 -3.3187 -1.4351 36 1 11.5616 -1.5911 -0.3701 37 1 12.3977 -0.6240 1.2862 38 1 12.3381 0.3450 -0.2057 39 1 12.4466 2.4246 1.1396 40 1 12.5062 1.4563 2.6320 41 1 16.9952 2.8077 2.2694 42 1 8.0426 0.3751 1.0468 43 1 1.6645 -2.1301 -0.0023 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119217708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:41 Heat of formation + Delta-G solvation = -15.182187 kcal Electronic energy + Delta-G solvation = -25405.826140 eV Core-core repulsion = 21609.218976 eV Total energy + Delta-G solvation = -3796.607164 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.25067 -40.18978 -39.12262 -37.20838 -34.80240 -34.12176 -33.28681 -32.45071 -31.09202 -30.00269 -29.26250 -27.98065 -25.23963 -24.37929 -23.87070 -22.68477 -21.93071 -21.06363 -20.18348 -18.81125 -18.05710 -17.19730 -16.70678 -16.03745 -15.80675 -15.72943 -15.56090 -15.46406 -15.35428 -14.97432 -14.52791 -14.22638 -14.03002 -13.70632 -13.47253 -13.24205 -13.09351 -13.07841 -12.83470 -12.53965 -12.29935 -11.88141 -11.79869 -11.54598 -10.98466 -10.87649 -10.45077 -10.37463 -10.31654 -10.13181 -9.95881 -9.87347 -9.76305 -9.49732 -9.30858 -8.59377 -8.28901 -7.84533 -6.10638 -4.11317 0.11427 0.70465 1.37591 1.62628 2.39519 2.69544 3.31695 3.38513 3.38787 3.45637 3.59488 3.84426 3.96534 4.18454 4.26142 4.34567 4.42432 4.42961 4.73060 4.96376 5.00225 5.02862 5.20386 5.21193 5.23708 5.35175 5.35926 5.46135 5.46664 5.64079 5.67364 5.85465 5.96778 5.97246 6.05551 6.27478 6.35400 6.45796 6.53826 6.68394 6.90067 7.07384 7.15027 7.27821 7.33033 7.65824 7.85028 7.96957 8.41777 8.90061 9.49921 11.01829 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.019392 B = 0.002120 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.541583 B =13205.367810 C =14521.647911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.114 4.114 3 C -0.084 4.084 4 C -0.102 4.102 5 C 0.072 3.928 6 C 0.569 3.431 7 O -0.503 6.503 8 N -0.652 5.652 9 C 0.173 3.827 10 C -0.190 4.190 11 C -0.061 4.061 12 C -0.222 4.222 13 C 0.162 3.838 14 O -0.316 6.316 15 C 0.072 3.928 16 C -0.010 4.010 17 C -0.526 4.526 18 H 0.075 0.925 19 C 0.072 3.928 20 N -0.898 5.898 21 Si 0.880 3.120 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.262 1.262 25 C -0.163 4.163 26 N -0.456 5.456 27 C 0.098 3.902 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.144 0.856 32 H 0.152 0.848 33 H 0.420 0.580 34 H 0.123 0.877 35 H 0.127 0.873 36 H 0.134 0.866 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.028 0.972 40 H 0.023 0.977 41 H 0.265 0.735 42 H 0.144 0.856 43 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.095 -9.051 -5.463 35.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.116 4.116 3 C -0.109 4.109 4 C -0.123 4.123 5 C -0.066 4.066 6 C 0.355 3.645 7 O -0.377 6.377 8 N -0.296 5.296 9 C 0.079 3.921 10 C -0.211 4.211 11 C -0.080 4.080 12 C -0.242 4.242 13 C 0.114 3.886 14 O -0.229 6.229 15 C -0.002 4.002 16 C -0.047 4.047 17 C -0.564 4.564 18 H 0.093 0.907 19 C -0.130 4.130 20 N -0.536 5.536 21 Si 0.707 3.293 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.187 1.187 25 C -0.183 4.183 26 N -0.167 5.167 27 C -0.063 4.063 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.162 0.838 32 H 0.169 0.831 33 H 0.258 0.742 34 H 0.141 0.859 35 H 0.145 0.855 36 H 0.151 0.849 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.047 0.953 40 H 0.042 0.958 41 H 0.075 0.925 42 H 0.162 0.838 43 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -33.041 -8.813 -5.310 34.606 hybrid contribution -0.752 0.958 0.409 1.285 sum -33.793 -7.855 -4.901 35.038 Atomic orbital electron populations 1.20804 0.89620 1.03643 1.03107 1.21226 0.98058 0.94200 0.98159 1.21568 0.93544 0.98731 0.97106 1.22180 0.95047 0.99091 0.95936 1.20980 0.93579 0.90016 1.02021 1.17978 0.86113 0.83701 0.76708 1.90868 1.65373 1.33934 1.47478 1.43181 1.05374 1.09629 1.71465 1.17305 0.81572 0.96333 0.96901 1.20663 0.95215 1.00729 1.04448 1.20679 0.92604 0.97565 0.97162 1.21424 1.01170 0.97142 1.04423 1.18909 0.90652 0.87991 0.91057 1.86137 1.20728 1.45878 1.70158 1.23098 0.74684 1.01513 1.00912 1.19592 0.95728 0.93402 0.95999 1.20844 0.87983 1.12124 1.35424 0.90719 1.24924 0.94657 0.97736 0.95676 1.69889 1.02461 1.36338 1.44946 0.86766 0.79651 0.82192 0.80740 1.20069 1.21189 1.18688 1.20402 0.90615 1.02357 1.04963 1.67511 1.08898 1.30224 1.10038 1.22700 0.89130 0.97889 0.96538 0.90304 0.90880 0.90714 0.83849 0.83053 0.74216 0.85910 0.85506 0.84860 0.92425 0.92408 0.95345 0.95821 0.92479 0.83828 0.81928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.27 10.03 36.00 0.36 0.09 16 2 C -0.11 -0.61 5.91 -104.36 -0.62 -1.23 16 3 C -0.08 -0.51 9.85 -39.31 -0.39 -0.90 16 4 C -0.10 -0.90 9.63 -39.05 -0.38 -1.28 16 5 C 0.07 0.76 6.75 -83.01 -0.56 0.20 16 6 C 0.57 7.48 7.65 -12.20 -0.09 7.38 16 7 O -0.50 -8.26 13.76 5.34 0.07 -8.19 16 8 N -0.65 -7.79 5.32 -10.65 -0.06 -7.85 16 9 C 0.17 2.45 6.30 -83.75 -0.53 1.92 16 10 C -0.19 -2.35 9.96 -39.36 -0.39 -2.74 16 11 C -0.06 -0.80 10.03 -39.63 -0.40 -1.19 16 12 C -0.22 -3.52 9.04 -39.39 -0.36 -3.87 16 13 C 0.16 2.95 6.68 -39.25 -0.26 2.69 16 14 O -0.32 -6.62 10.13 -19.41 -0.20 -6.82 16 15 C 0.07 1.54 4.68 37.16 0.17 1.71 16 16 C -0.01 -0.24 4.41 -27.88 -0.12 -0.37 16 17 C -0.53 -15.09 9.66 -34.44 -0.33 -15.42 16 18 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 19 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 20 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16 21 Si 0.88 22.06 27.47 -169.99 -4.67 17.39 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.26 -6.45 6.54 56.52 0.37 -6.08 16 25 C -0.16 -2.79 8.63 -39.24 -0.34 -3.13 16 26 N -0.46 -4.10 9.55 -9.80 -0.09 -4.19 16 27 C 0.10 0.62 10.86 -17.57 -0.19 0.43 16 28 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 29 H 0.07 0.13 8.09 -51.93 -0.42 -0.29 16 30 H 0.07 0.10 8.09 -51.93 -0.42 -0.32 16 31 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 32 H 0.15 1.33 7.64 -52.49 -0.40 0.93 16 33 H 0.42 3.92 8.16 -40.82 -0.33 3.59 16 34 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 35 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 36 H 0.13 2.05 6.29 -52.49 -0.33 1.72 16 37 H 0.06 1.17 7.66 -51.93 -0.40 0.77 16 38 H 0.06 1.19 7.66 -51.93 -0.40 0.79 16 39 H 0.03 0.72 7.20 -51.93 -0.37 0.35 16 40 H 0.02 0.59 7.57 -51.93 -0.39 0.19 16 41 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 42 H 0.14 2.65 6.22 -52.49 -0.33 2.32 16 43 H 0.16 0.55 8.06 -52.49 -0.42 0.13 16 LS Contribution 367.73 15.07 5.54 5.54 Total: -1.00 -34.40 367.73 -8.64 -43.04 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -5.49 Total: 1.61 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: -4.52 Total: -13.69 kcal Atomic # 7 Polarization: -39.50 SS G_CDS: 0.62 Total: -38.88 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -0.12 Total: -15.01 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.67 Total: 17.39 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.40 -8.64 -43.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119217708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.858 kcal (2) G-P(sol) polarization free energy of solvation -34.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds