Wall clock time and date at job start Tue Mar 31 2020 15:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38639 * 120.31964 * 2 1 4 4 C 1.38578 * 118.48739 * 179.97438 * 3 2 1 5 5 C 1.39337 * 119.05910 * 0.02562 * 4 3 2 6 6 C 1.48130 * 119.72280 * 179.97438 * 5 4 3 7 7 O 1.21531 * 120.00016 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00051 * 180.02562 * 6 5 4 9 9 C 1.39818 * 120.00264 * 175.38337 * 8 6 5 10 10 C 1.38952 * 120.04815 * 214.82724 * 9 8 6 11 11 C 1.38116 * 120.04067 * 179.75034 * 10 9 8 12 12 C 1.38220 * 120.12345 * 0.54741 * 11 10 9 13 13 C 1.38767 * 120.09072 * 359.70693 * 12 11 10 14 14 O 1.35895 * 120.01944 * 179.97438 * 13 12 11 15 15 C 1.42901 * 117.00319 * 0.02562 * 14 13 12 16 16 C 1.52996 * 109.47520 * 179.97438 * 15 14 13 17 17 C 1.50703 * 109.47304 * 179.97438 * 16 15 14 18 18 H 1.08000 * 119.99888 * 0.02562 * 17 16 15 19 19 C 1.37870 * 120.00205 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00407 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 120.00147 * 0.02562 * 19 17 16 22 22 H 1.48502 * 109.47188 * 89.99496 * 21 19 17 23 23 H 1.48493 * 109.47582 * 209.99952 * 21 19 17 24 24 H 1.48505 * 109.46970 * 330.00202 * 21 19 17 25 25 C 1.38617 * 119.96171 * 0.02562 * 13 12 11 26 26 N 1.32726 * 120.54904 * 0.02562 * 5 4 3 27 27 C 1.31525 * 121.64307 * 359.97438 * 26 5 4 28 28 H 1.09002 * 109.47291 * 270.00085 * 1 2 3 29 29 H 1.08999 * 109.47355 * 29.99611 * 1 2 3 30 30 H 1.08997 * 109.47040 * 150.00286 * 1 2 3 31 31 H 1.07997 * 120.75220 * 359.97438 * 3 2 1 32 32 H 1.07998 * 120.47311 * 180.29150 * 4 3 2 33 33 H 0.97001 * 119.99451 * 355.38552 * 8 6 5 34 34 H 1.08004 * 119.97838 * 0.02562 * 10 9 8 35 35 H 1.07997 * 119.93882 * 180.25349 * 11 10 9 36 36 H 1.08002 * 119.95451 * 179.72352 * 12 11 10 37 37 H 1.09003 * 109.47061 * 299.99957 * 15 14 13 38 38 H 1.09001 * 109.47055 * 59.99643 * 15 14 13 39 39 H 1.08997 * 109.47265 * 299.99765 * 16 15 14 40 40 H 1.09001 * 109.46951 * 59.99943 * 16 15 14 41 41 H 0.96993 * 120.00736 * 180.02562 * 20 19 17 42 42 H 1.07995 * 120.06479 * 180.02562 * 25 13 12 43 43 H 1.07997 * 119.54563 * 179.97438 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1968 0.0000 4 6 3.5919 1.1525 0.0005 5 6 4.2294 -0.0865 0.0005 6 6 5.7093 -0.1510 0.0005 7 8 6.3622 0.8740 0.0010 8 7 6.3317 -1.3465 0.0000 9 6 7.7251 -1.4092 -0.0975 10 6 8.3279 -2.4513 -0.7914 11 6 9.7041 -2.5103 -0.8919 12 6 10.4856 -1.5399 -0.2935 13 6 9.8894 -0.4997 0.4052 14 8 10.6592 0.4533 0.9935 15 6 12.0751 0.3223 0.8519 16 6 12.7691 1.4786 1.5744 17 6 14.2624 1.3400 1.4255 18 1 14.6751 0.5104 0.8707 19 6 15.1016 2.2728 1.9967 20 7 16.4048 2.1517 1.8673 21 14 14.3879 3.7082 2.9559 22 1 14.2456 3.3273 4.3841 23 1 15.2950 4.8785 2.8437 24 1 13.0555 4.0597 2.4023 25 6 8.5083 -0.4339 0.5038 26 7 3.5217 -1.2094 -0.0005 27 6 2.2065 -1.1960 -0.0011 28 1 -0.3634 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6845 2.1420 -0.0004 32 1 4.1691 2.0653 0.0053 33 1 5.8130 -2.1633 0.0672 34 1 7.7196 -3.2132 -1.2562 35 1 10.1707 -3.3187 -1.4351 36 1 11.5616 -1.5911 -0.3701 37 1 12.3977 -0.6240 1.2862 38 1 12.3381 0.3450 -0.2057 39 1 12.4466 2.4246 1.1396 40 1 12.5062 1.4563 2.6320 41 1 16.9952 2.8077 2.2694 42 1 8.0426 0.3751 1.0468 43 1 1.6645 -2.1301 -0.0023 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119217708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:40 Heat of formation + Delta-G solvation = -37.458436 kcal Electronic energy + Delta-G solvation = -25406.792110 eV Core-core repulsion = 21609.218976 eV Total energy + Delta-G solvation = -3797.573134 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.09700 -41.16273 -40.28171 -38.48725 -35.89779 -35.36940 -34.66038 -33.03626 -32.94622 -31.26875 -30.46079 -28.56153 -27.11531 -25.05867 -24.66626 -23.65340 -23.30900 -22.32459 -21.51356 -19.94849 -19.26882 -18.67442 -17.85861 -17.15336 -17.03182 -16.89941 -16.74930 -16.51511 -16.30154 -16.13352 -15.84426 -15.17977 -14.97037 -14.78778 -14.50615 -14.46352 -14.35763 -14.16360 -13.58104 -13.46607 -13.34000 -13.29591 -12.78000 -12.72026 -12.67935 -12.47265 -12.14850 -11.87895 -11.73894 -11.53575 -11.35529 -11.20109 -10.91473 -10.83535 -10.64810 -10.04329 -9.48750 -9.07479 -8.36961 -6.43296 -0.55192 0.17692 0.25307 0.44199 1.33080 1.34754 1.47899 1.53386 1.74317 2.31012 2.32408 2.69571 2.81505 2.97727 2.98857 3.69047 3.80358 3.87708 3.89622 3.92529 4.12543 4.16507 4.20099 4.20721 4.21691 4.37984 4.52430 4.61950 4.62938 4.68526 4.80330 4.86208 4.96645 5.07887 5.17121 5.21507 5.23590 5.26773 5.27322 5.35668 5.44885 5.50653 5.59955 5.83172 6.14251 6.18166 6.48885 6.61707 6.66349 6.92002 7.21811 8.78542 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.019392 B = 0.002120 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.541583 B =13205.367810 C =14521.647911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.100 4.100 3 C -0.085 4.085 4 C -0.114 4.114 5 C 0.044 3.956 6 C 0.565 3.435 7 O -0.548 6.548 8 N -0.641 5.641 9 C 0.171 3.829 10 C -0.171 4.171 11 C -0.052 4.052 12 C -0.231 4.231 13 C 0.127 3.873 14 O -0.339 6.339 15 C 0.086 3.914 16 C -0.008 4.008 17 C -0.536 4.536 18 H 0.046 0.954 19 C 0.017 3.983 20 N -0.939 5.939 21 Si 0.945 3.055 22 H -0.264 1.264 23 H -0.276 1.276 24 H -0.256 1.256 25 C -0.182 4.182 26 N -0.466 5.466 27 C 0.092 3.908 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.170 0.830 32 H 0.140 0.860 33 H 0.434 0.566 34 H 0.165 0.835 35 H 0.166 0.834 36 H 0.133 0.867 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.024 0.976 40 H 0.025 0.975 41 H 0.271 0.729 42 H 0.120 0.880 43 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -37.943 -10.527 -5.997 39.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.102 4.102 3 C -0.111 4.111 4 C -0.135 4.135 5 C -0.092 4.092 6 C 0.353 3.647 7 O -0.424 6.424 8 N -0.287 5.287 9 C 0.076 3.924 10 C -0.191 4.191 11 C -0.070 4.070 12 C -0.250 4.250 13 C 0.081 3.919 14 O -0.253 6.253 15 C 0.011 3.989 16 C -0.045 4.045 17 C -0.574 4.574 18 H 0.064 0.936 19 C -0.182 4.182 20 N -0.579 5.579 21 Si 0.768 3.232 22 H -0.189 1.189 23 H -0.201 1.201 24 H -0.180 1.180 25 C -0.203 4.203 26 N -0.177 5.177 27 C -0.069 4.069 28 H 0.108 0.892 29 H 0.102 0.898 30 H 0.109 0.891 31 H 0.188 0.812 32 H 0.158 0.842 33 H 0.274 0.726 34 H 0.182 0.818 35 H 0.184 0.816 36 H 0.151 0.849 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.042 0.958 40 H 0.043 0.957 41 H 0.080 0.920 42 H 0.138 0.862 43 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -36.919 -10.330 -5.849 38.781 hybrid contribution 0.239 1.277 0.496 1.391 sum -36.681 -9.053 -5.353 38.159 Atomic orbital electron populations 1.20911 0.86956 1.05006 1.04149 1.21638 0.99817 0.93367 0.95363 1.21903 0.92329 1.00523 0.96297 1.22242 0.96470 0.98209 0.96583 1.20631 0.92054 0.91266 1.05294 1.18502 0.87437 0.83235 0.75504 1.90839 1.66665 1.35345 1.49595 1.43133 1.04559 1.10090 1.70881 1.17479 0.82439 0.96023 0.96415 1.21122 0.95439 1.00201 1.02360 1.21130 0.92732 0.97274 0.95904 1.21560 1.01548 0.97300 1.04630 1.19157 0.90784 0.88881 0.93118 1.86044 1.20101 1.47636 1.71526 1.22727 0.75456 1.00159 1.00515 1.19458 0.93853 0.94710 0.96500 1.21087 0.90061 1.11325 1.34881 0.93579 1.25817 0.94944 1.00683 0.96752 1.70007 1.03880 1.37743 1.46261 0.85730 0.79131 0.78738 0.79560 1.18868 1.20145 1.18029 1.20357 0.90593 1.03082 1.06280 1.67456 1.10241 1.29503 1.10541 1.23337 0.88319 0.99745 0.95486 0.89158 0.89848 0.89121 0.81206 0.84185 0.72581 0.81771 0.81622 0.84919 0.91790 0.92158 0.95812 0.95672 0.92037 0.86235 0.78750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.08 10.03 71.24 0.71 0.63 16 2 C -0.10 -0.77 5.91 -19.69 -0.12 -0.89 16 3 C -0.09 -0.90 9.85 22.45 0.22 -0.67 16 4 C -0.11 -2.04 9.63 22.62 0.22 -1.83 16 5 C 0.04 0.93 6.75 41.90 0.28 1.21 16 6 C 0.57 15.49 7.65 86.87 0.66 16.15 16 7 O -0.55 -19.41 13.76 -3.81 -0.05 -19.46 16 8 N -0.64 -15.16 5.32 -305.90 -1.63 -16.78 16 9 C 0.17 4.78 6.30 38.17 0.24 5.02 16 10 C -0.17 -3.75 9.96 22.41 0.22 -3.52 16 11 C -0.05 -1.21 10.03 22.24 0.22 -0.99 16 12 C -0.23 -7.24 9.04 22.39 0.20 -7.04 16 13 C 0.13 4.80 6.68 22.49 0.15 4.95 16 14 O -0.34 -14.86 10.13 -92.37 -0.94 -15.80 16 15 C 0.09 3.79 4.68 71.98 0.34 4.13 16 16 C -0.01 -0.39 4.41 29.85 0.13 -0.26 16 17 C -0.54 -31.65 9.66 25.60 0.25 -31.40 16 18 H 0.05 2.90 7.99 -2.91 -0.02 2.88 16 19 C 0.02 0.98 5.47 84.65 0.46 1.45 16 20 N -0.94 -58.94 13.96 21.44 0.30 -58.64 16 21 Si 0.95 45.87 27.47 68.60 1.88 47.76 16 22 H -0.26 -12.27 7.11 99.48 0.71 -11.57 16 23 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 24 H -0.26 -12.09 6.54 99.48 0.65 -11.44 16 25 C -0.18 -6.55 8.63 22.49 0.19 -6.36 16 26 N -0.47 -7.77 9.55 -184.92 -1.77 -9.53 16 27 C 0.09 0.92 10.86 84.81 0.92 1.84 16 28 H 0.09 -0.04 8.14 -2.39 -0.02 -0.06 16 29 H 0.08 -0.05 8.09 -2.39 -0.02 -0.07 16 30 H 0.09 -0.16 8.09 -2.39 -0.02 -0.18 16 31 H 0.17 0.78 8.06 -2.91 -0.02 0.76 16 32 H 0.14 2.71 7.64 -2.91 -0.02 2.69 16 33 H 0.43 7.54 8.16 -92.71 -0.76 6.78 16 34 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16 35 H 0.17 2.59 8.06 -2.91 -0.02 2.56 16 36 H 0.13 4.10 6.29 -2.91 -0.02 4.08 16 37 H 0.06 2.69 7.66 -2.39 -0.02 2.67 16 38 H 0.06 2.58 7.66 -2.39 -0.02 2.56 16 39 H 0.02 1.22 7.20 -2.39 -0.02 1.20 16 40 H 0.02 1.26 7.57 -2.39 -0.02 1.25 16 41 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 42 H 0.12 4.82 6.22 -2.91 -0.02 4.80 16 43 H 0.20 0.56 8.06 -2.91 -0.02 0.53 16 Total: -1.00 -78.89 367.73 3.35 -75.54 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: 0.23 Total: 14.50 kcal Atomic # 6 Polarization: -22.89 SS G_CDS: 5.32 Total: -17.57 kcal Atomic # 7 Polarization: -81.87 SS G_CDS: -3.09 Total: -84.96 kcal Atomic # 8 Polarization: -34.27 SS G_CDS: -0.99 Total: -35.26 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 1.88 Total: 47.76 kcal Total: -78.89 3.35 -75.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119217708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.078 kcal (2) G-P(sol) polarization free energy of solvation -78.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds