Wall clock time and date at job start Tue Mar 31 2020 14:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39634 * 120.14897 * 27.66397 * 3 2 1 5 5 C 1.37951 * 119.84242 * 180.02562 * 4 3 2 6 6 C 1.38360 * 120.15057 * 359.97438 * 5 4 3 7 7 C 1.50704 * 119.84434 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.47179 * 25.00682 * 7 6 5 9 9 O 1.42905 * 109.47120 * 145.00177 * 7 6 5 10 10 C 1.52998 * 109.47056 * 265.00266 * 7 6 5 11 11 N 1.46902 * 109.46910 * 175.97524 * 10 7 6 12 12 C 1.46893 * 111.00358 * 286.87534 * 11 10 7 13 13 C 1.50702 * 109.47749 * 164.08568 * 12 11 10 14 14 H 1.08000 * 119.99103 * 3.14174 * 13 12 11 15 15 C 1.37868 * 120.00365 * 183.14030 * 13 12 11 16 16 N 1.31516 * 119.99946 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00081 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47539 * 60.00013 * 17 15 13 19 19 H 1.48503 * 109.47479 * 180.02562 * 17 15 13 20 20 H 1.48507 * 109.47238 * 300.00133 * 17 15 13 21 21 C 1.46899 * 111.00003 * 162.92014 * 11 10 7 22 22 C 1.50699 * 109.47256 * 283.85878 * 21 11 10 23 23 C 1.34508 * 125.79123 * 90.00092 * 22 21 11 24 24 C 1.41379 * 106.84280 * 180.02562 * 23 22 21 25 25 C 1.34517 * 106.84166 * 359.97438 * 24 23 22 26 26 O 1.34302 * 125.78763 * 269.68851 * 22 21 11 27 27 C 1.38362 * 120.30815 * 0.28103 * 6 5 4 28 28 C 1.37951 * 120.15176 * 359.48609 * 27 6 5 29 29 H 1.07991 * 120.08080 * 0.02562 * 4 3 2 30 30 H 1.08002 * 119.92386 * 180.02562 * 5 4 3 31 31 H 0.96700 * 113.99208 * 59.99794 * 9 7 6 32 32 H 1.08997 * 109.47088 * 55.97764 * 10 7 6 33 33 H 1.09003 * 109.47517 * 295.97473 * 10 7 6 34 34 H 1.09006 * 109.47498 * 284.09266 * 12 11 10 35 35 H 1.09004 * 109.47113 * 44.08558 * 12 11 10 36 36 H 0.97007 * 119.99818 * 180.02562 * 16 15 13 37 37 H 1.09003 * 109.47225 * 43.85778 * 21 11 10 38 38 H 1.08997 * 109.47461 * 163.85621 * 21 11 10 39 39 H 1.08004 * 126.58245 * 0.03217 * 23 22 21 40 40 H 1.08009 * 126.58376 * 179.97438 * 24 23 22 41 41 H 1.08000 * 125.79141 * 180.02562 * 25 24 23 42 42 H 1.08001 * 119.92314 * 179.72019 * 27 6 5 43 43 H 1.07993 * 120.07764 * 180.25687 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2699 -1.0685 -0.5606 5 6 4.6493 -1.0616 -0.5567 6 6 5.3374 0.0017 0.0005 7 6 6.8444 0.0018 0.0015 8 1 7.2084 -0.6217 -0.8151 9 8 7.3208 1.3381 -0.1707 10 6 7.3536 -0.5534 1.3332 11 7 8.8194 -0.6434 1.2978 12 6 9.2583 -1.7511 0.4386 13 6 10.7194 -1.5835 0.1099 14 1 11.2796 -0.7671 0.5412 15 6 11.3410 -2.4724 -0.7412 16 7 10.6586 -3.4664 -1.2666 17 14 13.1523 -2.2651 -1.1480 18 1 13.9524 -2.3448 0.1005 19 1 13.5772 -3.3419 -2.0782 20 1 13.3673 -0.9434 -1.7902 21 6 9.3714 -0.7775 2.6525 22 6 9.3323 0.5602 3.3455 23 6 8.3161 1.0307 4.0906 24 6 8.7001 2.3137 4.5437 25 6 9.9284 2.5502 4.0489 26 8 10.3087 1.4822 3.3288 27 6 4.6483 1.0618 0.5624 28 6 3.2688 1.0702 0.5611 29 1 2.7340 -1.8987 -0.9962 30 1 5.1935 -1.8876 -0.9903 31 1 7.0348 1.9497 0.5215 32 1 6.9325 -1.5452 1.4981 33 1 7.0497 0.1095 2.1433 34 1 9.1092 -2.6966 0.9601 35 1 8.6760 -1.7488 -0.4829 36 1 11.0960 -4.0920 -1.8652 37 1 8.7781 -1.4967 3.2172 38 1 10.4027 -1.1252 2.5919 39 1 7.3853 0.5254 4.3022 40 1 8.1189 2.9767 5.1675 41 1 10.5118 3.4451 4.2078 42 1 5.1917 1.8864 0.9997 43 1 2.7322 1.9002 0.9963 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268730708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:14 Heat of formation + Delta-G solvation = 30.634015 kcal Electronic energy + Delta-G solvation = -26805.649141 eV Core-core repulsion = 23011.028717 eV Total energy + Delta-G solvation = -3794.620424 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.21107 -39.99725 -37.84248 -36.57137 -35.68243 -32.83698 -32.48728 -32.03003 -31.25417 -30.30036 -28.50498 -26.74486 -25.06104 -23.52562 -23.00606 -21.92587 -21.38556 -20.52688 -19.90360 -19.13049 -17.27198 -16.85520 -16.57020 -15.94921 -15.73690 -15.32689 -14.91021 -14.77308 -14.56170 -14.24450 -14.22846 -13.81090 -13.74209 -13.47127 -13.25074 -12.94759 -12.80631 -12.58300 -12.56728 -12.40494 -12.20835 -12.07255 -11.69602 -11.34815 -11.30393 -11.01864 -10.91082 -10.71259 -10.48111 -9.87994 -9.86947 -9.64705 -9.32872 -9.24293 -8.88759 -8.47692 -8.17429 -7.42933 -6.07303 -4.08001 0.54086 1.13015 2.06447 2.44213 2.72709 2.86277 3.33341 3.37008 3.37332 3.41478 3.64722 3.66205 4.34793 4.47658 4.58635 4.63819 4.71778 4.97755 5.11647 5.14301 5.25389 5.26846 5.29720 5.35020 5.37040 5.47524 5.57909 5.69451 5.72784 5.95663 5.99629 6.04318 6.06315 6.06803 6.11368 6.20503 6.45411 6.49196 6.59538 6.77489 7.03270 7.14762 7.25436 7.50784 7.72544 7.91598 7.92907 8.06647 8.42252 8.99178 9.56682 11.03242 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.009679 B = 0.003790 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2892.164374 B = 7386.335040 C = 9722.658504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C 0.260 3.740 3 C -0.042 4.042 4 C -0.066 4.066 5 C -0.109 4.109 6 C -0.073 4.073 7 C 0.148 3.852 8 H 0.120 0.880 9 O -0.532 6.532 10 C 0.026 3.974 11 N -0.520 5.520 12 C 0.194 3.806 13 C -0.507 4.507 14 H 0.064 0.936 15 C 0.058 3.942 16 N -0.899 5.899 17 Si 0.897 3.103 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.275 1.275 21 C 0.129 3.871 22 C 0.034 3.966 23 C -0.232 4.232 24 C -0.216 4.216 25 C -0.053 4.053 26 O -0.164 6.164 27 C -0.114 4.114 28 C -0.067 4.067 29 H 0.133 0.867 30 H 0.139 0.861 31 H 0.363 0.637 32 H 0.038 0.962 33 H 0.070 0.930 34 H -0.008 1.008 35 H 0.038 0.962 36 H 0.262 0.738 37 H 0.056 0.944 38 H 0.104 0.896 39 H 0.139 0.861 40 H 0.140 0.860 41 H 0.195 0.805 42 H 0.132 0.868 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.986 8.400 7.788 15.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.102 5.102 2 C -0.055 4.055 3 C -0.045 4.045 4 C -0.087 4.087 5 C -0.127 4.127 6 C -0.075 4.075 7 C 0.088 3.912 8 H 0.137 0.863 9 O -0.335 6.335 10 C -0.103 4.103 11 N -0.244 5.244 12 C 0.070 3.930 13 C -0.545 4.545 14 H 0.082 0.918 15 C -0.144 4.144 16 N -0.539 5.539 17 Si 0.725 3.275 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.201 1.201 21 C 0.002 3.998 22 C -0.018 4.018 23 C -0.252 4.252 24 C -0.235 4.235 25 C -0.121 4.121 26 O -0.058 6.058 27 C -0.132 4.132 28 C -0.088 4.088 29 H 0.151 0.849 30 H 0.157 0.843 31 H 0.209 0.791 32 H 0.056 0.944 33 H 0.089 0.911 34 H 0.010 0.990 35 H 0.056 0.944 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.122 0.878 39 H 0.157 0.843 40 H 0.158 0.842 41 H 0.212 0.788 42 H 0.150 0.850 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.982 8.357 6.762 15.368 hybrid contribution 0.530 -0.348 0.717 0.957 sum -10.453 8.009 7.479 15.144 Atomic orbital electron populations 1.81249 1.12138 1.07889 1.08951 1.25779 0.92712 0.93558 0.93460 1.15994 0.84120 0.98204 1.06206 1.21173 0.94225 0.96623 0.96632 1.21073 0.93434 0.98784 0.99456 1.21123 0.97912 0.93913 0.94528 1.21005 0.85570 0.85333 0.99288 0.86267 1.86756 1.76534 1.18499 1.51753 1.22775 0.91007 0.99738 0.96780 1.61920 1.05238 1.48869 1.08405 1.19825 0.96750 0.85234 0.91219 1.21097 0.94192 1.11659 1.27572 0.91766 1.24941 0.98379 0.95171 0.95870 1.69928 1.36416 1.15522 1.32019 0.86572 0.84950 0.77752 0.78238 1.20281 1.21422 1.20093 1.20477 1.03394 0.86819 0.89154 1.22747 0.87188 0.92690 0.99174 1.21475 1.00889 0.97280 1.05571 1.21690 0.97377 0.98284 1.06190 1.23918 0.97534 0.91937 0.98737 1.84105 1.41194 1.23565 1.56982 1.20856 0.93427 0.98892 1.00066 1.21094 0.94127 0.96595 0.96935 0.84923 0.84292 0.79090 0.94390 0.91143 0.98985 0.94448 0.92840 0.92599 0.87808 0.84278 0.84193 0.78830 0.84996 0.85083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -5.57 18.54 41.84 0.78 -4.80 16 2 C 0.26 2.84 15.33 -22.47 -0.34 2.49 16 3 C -0.04 -0.40 5.73 -106.93 -0.61 -1.01 16 4 C -0.07 -0.61 9.76 -39.17 -0.38 -0.99 16 5 C -0.11 -1.14 9.66 -39.64 -0.38 -1.52 16 6 C -0.07 -0.82 5.01 -104.53 -0.52 -1.34 16 7 C 0.15 2.12 3.26 -27.88 -0.09 2.03 16 8 H 0.12 2.01 6.41 -51.93 -0.33 1.68 16 9 O -0.53 -8.15 13.07 -35.23 -0.46 -8.61 16 10 C 0.03 0.39 4.41 -3.82 -0.02 0.37 16 11 N -0.52 -9.92 4.25 -237.52 -1.01 -10.93 16 12 C 0.19 4.54 4.56 -4.98 -0.02 4.52 16 13 C -0.51 -13.45 8.39 -34.44 -0.29 -13.73 16 14 H 0.06 1.73 7.60 -52.49 -0.40 1.34 16 15 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 16 N -0.90 -25.32 13.29 55.43 0.74 -24.58 16 17 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 C 0.13 2.27 5.34 -4.98 -0.03 2.24 16 22 C 0.03 0.55 6.53 -35.63 -0.23 0.31 16 23 C -0.23 -3.15 9.52 -39.71 -0.38 -3.52 16 24 C -0.22 -2.63 10.91 -39.70 -0.43 -3.06 16 25 C -0.05 -0.68 12.09 29.42 0.36 -0.32 16 26 O -0.16 -2.74 10.65 5.70 0.06 -2.68 16 27 C -0.11 -1.06 9.31 -39.64 -0.37 -1.43 16 28 C -0.07 -0.57 9.76 -39.17 -0.38 -0.96 16 29 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 30 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 31 H 0.36 4.21 7.38 45.56 0.34 4.55 16 32 H 0.04 0.56 8.04 -51.93 -0.42 0.15 16 33 H 0.07 0.93 6.07 -51.93 -0.32 0.62 16 34 H -0.01 -0.19 8.05 -51.93 -0.42 -0.61 16 35 H 0.04 0.93 6.32 -51.93 -0.33 0.60 16 36 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 37 H 0.06 0.88 7.99 -51.93 -0.42 0.46 16 38 H 0.10 2.04 6.99 -51.93 -0.36 1.68 16 39 H 0.14 1.64 7.82 -52.48 -0.41 1.23 16 40 H 0.14 1.33 8.06 -52.48 -0.42 0.90 16 41 H 0.19 1.72 8.06 -52.49 -0.42 1.30 16 42 H 0.13 0.99 6.60 -52.49 -0.35 0.64 16 43 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 LS Contribution 373.53 15.07 5.63 5.63 Total: -1.00 -31.37 373.53 -8.18 -39.54 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -4.66 Total: 4.76 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: -4.23 Total: -14.45 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: 0.50 Total: -40.31 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: -0.40 Total: -11.29 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.37 -8.18 -39.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268730708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.178 kcal (2) G-P(sol) polarization free energy of solvation -31.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds