Wall clock time and date at job start Tue Mar 31 2020 15:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38088 * 119.52516 * 2 1 4 4 C 1.38775 * 119.35526 * 180.02562 * 3 2 1 5 5 C 1.38797 * 118.44824 * 359.97438 * 4 3 2 6 6 O 1.35974 * 120.49769 * 180.02562 * 5 4 3 7 7 C 1.39469 * 119.00566 * 0.02562 * 5 4 3 8 8 N 1.39575 * 119.72461 * 179.97438 * 7 5 4 9 9 C 1.34781 * 119.99480 * 180.02562 * 8 7 5 10 10 O 1.21281 * 120.00322 * 359.97438 * 9 8 7 11 11 C 1.50701 * 119.99637 * 179.97438 * 9 8 7 12 12 C 1.53000 * 109.47233 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.47418 * 305.00219 * 12 11 9 14 14 C 1.50705 * 109.46954 * 65.00174 * 12 11 9 15 15 H 1.07998 * 119.99937 * 29.58869 * 14 12 11 16 16 C 1.37878 * 120.00046 * 209.58532 * 14 12 11 17 17 N 1.31511 * 119.99619 * 4.94167 * 16 14 12 18 18 Si 1.86793 * 120.00190 * 184.94184 * 16 14 12 19 19 H 1.48505 * 109.47029 * 59.99804 * 18 16 14 20 20 H 1.48499 * 109.47413 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47156 * 300.00045 * 18 16 14 22 22 C 1.50704 * 109.47475 * 184.99971 * 12 11 9 23 23 C 1.38234 * 119.99836 * 296.77639 * 22 12 11 24 24 C 1.38237 * 119.99466 * 179.78699 * 23 22 12 25 25 C 1.38232 * 120.00214 * 0.43452 * 24 23 22 26 26 C 1.38237 * 120.00205 * 359.81711 * 25 24 23 27 27 C 1.38231 * 119.99667 * 117.04084 * 22 12 11 28 28 N 1.31963 * 119.52232 * 180.29279 * 2 1 3 29 29 H 1.09002 * 109.46958 * 89.99744 * 1 2 3 30 30 H 1.08998 * 109.47167 * 210.00513 * 1 2 3 31 31 H 1.09003 * 109.46522 * 330.00432 * 1 2 3 32 32 H 1.07997 * 120.31981 * 359.97438 * 3 2 1 33 33 H 1.08000 * 120.77822 * 179.97438 * 4 3 2 34 34 H 0.96701 * 114.00173 * 269.98242 * 6 5 4 35 35 H 0.97000 * 120.00744 * 359.97438 * 8 7 5 36 36 H 1.08999 * 109.47569 * 299.99681 * 11 9 8 37 37 H 1.09006 * 109.47190 * 60.00191 * 11 9 8 38 38 H 0.97010 * 119.99694 * 180.02562 * 17 16 14 39 39 H 1.07996 * 119.99960 * 359.97438 * 23 22 12 40 40 H 1.07997 * 119.99759 * 180.27295 * 24 23 22 41 41 H 1.07999 * 119.99828 * 179.83323 * 25 24 23 42 42 H 1.08001 * 120.00410 * 179.97438 * 26 25 24 43 43 H 1.08001 * 120.00208 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2016 0.0000 4 6 3.5753 1.1974 -0.0005 5 6 4.2328 -0.0249 -0.0005 6 8 5.5915 -0.0775 -0.0005 7 6 3.4790 -1.1983 -0.0005 8 7 4.1248 -2.4357 -0.0010 9 6 3.4017 -3.5731 -0.0015 10 8 2.1900 -3.5214 -0.0011 11 6 4.0989 -4.9091 -0.0027 12 6 3.0560 -6.0287 -0.0024 13 1 2.3777 -5.8932 0.8399 14 6 2.2733 -5.9863 -1.2896 15 1 2.7377 -5.6171 -2.1920 16 6 0.9645 -6.4191 -1.3151 17 7 0.3685 -6.7771 -0.1988 18 14 0.0378 -6.4968 -2.9351 19 1 0.7392 -7.4204 -3.8627 20 1 -1.3412 -6.9918 -2.6934 21 1 -0.0209 -5.1407 -3.5374 22 6 3.7493 -7.3611 0.1203 23 6 4.6123 -7.7852 -0.8729 24 6 5.2516 -9.0055 -0.7581 25 6 5.0210 -9.8056 0.3453 26 6 4.1541 -9.3838 1.3359 27 6 3.5181 -8.1615 1.2233 28 7 2.1573 -1.1483 -0.0059 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3632 0.8901 0.5138 32 1 1.6450 2.1354 -0.0004 33 1 4.1307 2.1237 -0.0010 34 1 5.9846 -0.0931 -0.8839 35 1 5.0939 -2.4771 -0.0018 36 1 4.7222 -4.9930 -0.8929 37 1 4.7229 -4.9942 0.8871 38 1 -0.5523 -7.0819 -0.2168 39 1 4.7894 -7.1619 -1.7368 40 1 5.9292 -9.3349 -1.5319 41 1 5.5185 -10.7601 0.4335 42 1 3.9736 -10.0091 2.1978 43 1 2.8408 -7.8319 1.9973 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357166344.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:53 Heat of formation + Delta-G solvation = -8.214711 kcal Electronic energy + Delta-G solvation = -27090.159276 eV Core-core repulsion = 23293.854245 eV Total energy + Delta-G solvation = -3796.305031 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.75102 -38.87854 -38.11410 -37.36210 -34.64664 -33.80836 -31.88845 -31.56235 -31.00543 -30.00873 -28.81212 -26.85722 -25.58555 -23.64762 -22.58827 -22.08012 -21.60440 -20.26218 -19.33622 -18.53138 -17.20008 -16.86805 -16.46863 -15.96811 -15.70824 -15.37517 -14.73561 -14.48847 -14.27920 -14.06308 -13.93649 -13.76797 -13.36991 -13.12751 -12.67197 -12.47049 -12.42679 -12.24391 -12.10508 -11.96066 -11.71982 -11.62753 -11.30477 -10.84651 -10.75844 -10.59242 -10.28116 -10.26603 -10.04258 -9.64360 -9.42872 -9.38966 -9.07541 -8.50400 -8.29697 -8.04614 -7.87521 -7.62449 -5.91369 -3.91178 1.07600 1.36241 2.28682 2.33865 3.23490 3.39967 3.41639 3.43519 3.46421 3.86219 4.11624 4.49234 4.53170 4.74161 4.75486 5.06648 5.19449 5.41179 5.48281 5.62248 5.66203 5.68072 5.72786 5.76826 5.83990 5.99230 6.05574 6.08629 6.14051 6.16408 6.27941 6.41135 6.48619 6.52643 6.76223 6.84518 6.90898 7.03394 7.30986 7.44101 7.47303 7.51215 7.66525 7.88532 7.94453 8.06244 8.34032 8.38701 9.01473 9.07833 9.70130 11.18535 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.012430 B = 0.003940 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.066620 B = 7105.439639 C = 8594.153160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.158 3.842 3 C -0.206 4.206 4 C -0.070 4.070 5 C -0.008 4.008 6 O -0.489 6.489 7 C 0.365 3.635 8 N -0.669 5.669 9 C 0.493 3.507 10 O -0.418 6.418 11 C -0.119 4.119 12 C 0.079 3.921 13 H 0.074 0.926 14 C -0.494 4.494 15 H 0.049 0.951 16 C 0.079 3.921 17 N -0.879 5.879 18 Si 0.885 3.115 19 H -0.279 1.279 20 H -0.288 1.288 21 H -0.278 1.278 22 C -0.022 4.022 23 C -0.114 4.114 24 C -0.132 4.132 25 C -0.155 4.155 26 C -0.128 4.128 27 C -0.119 4.119 28 N -0.458 5.458 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.134 0.866 33 H 0.138 0.862 34 H 0.382 0.618 35 H 0.412 0.588 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.260 0.740 39 H 0.113 0.887 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.201 11.571 0.645 14.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.019 3.981 3 C -0.228 4.228 4 C -0.096 4.096 5 C -0.058 4.058 6 O -0.296 6.296 7 C 0.131 3.869 8 N -0.318 5.318 9 C 0.279 3.721 10 O -0.280 6.280 11 C -0.159 4.159 12 C 0.060 3.940 13 H 0.092 0.908 14 C -0.532 4.532 15 H 0.068 0.932 16 C -0.125 4.125 17 N -0.515 5.515 18 Si 0.713 3.287 19 H -0.205 1.205 20 H -0.214 1.214 21 H -0.204 1.204 22 C -0.023 4.023 23 C -0.132 4.132 24 C -0.151 4.151 25 C -0.173 4.173 26 C -0.147 4.147 27 C -0.137 4.137 28 N -0.176 5.176 29 H 0.097 0.903 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.152 0.848 33 H 0.156 0.844 34 H 0.237 0.763 35 H 0.248 0.752 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.131 0.869 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 7.573 10.589 1.334 13.086 hybrid contribution 0.564 0.594 -1.550 1.753 sum 8.136 11.183 -0.216 13.831 Atomic orbital electron populations 1.20727 0.88628 1.03556 1.03252 1.21277 0.97219 0.87353 0.92251 1.21724 0.93912 0.99238 1.07949 1.21570 0.94553 0.97128 0.96393 1.18788 0.83577 0.91748 1.11733 1.84906 1.15390 1.96094 1.33214 1.19054 0.88924 0.85767 0.93126 1.44243 1.10676 1.03456 1.73398 1.21300 0.88842 0.84794 0.77207 1.90879 1.12770 1.85422 1.38978 1.21808 1.00035 0.92447 1.01616 1.17839 0.90876 0.84255 1.01009 0.90812 1.20616 0.96325 1.42679 0.93545 0.93248 1.24794 0.97225 0.94760 0.95675 1.69890 1.12333 1.43628 1.25696 0.86778 0.79057 0.78208 0.84652 1.20473 1.21378 1.20357 1.20727 0.91437 0.98931 0.91217 1.20950 0.97497 0.95997 0.98790 1.20977 1.00840 0.95494 0.97746 1.20801 1.01174 0.99513 0.95814 1.20991 0.98180 0.96783 0.98701 1.21104 0.99408 0.94558 0.98606 1.67702 1.06159 1.28519 1.15173 0.90308 0.89781 0.90891 0.84841 0.84433 0.76339 0.75176 0.90299 0.91329 0.93067 0.86866 0.87660 0.87797 0.87619 0.86773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.34 10.16 36.01 0.37 -0.97 16 2 C 0.16 2.41 6.78 -82.59 -0.56 1.85 16 3 C -0.21 -2.46 9.73 -39.44 -0.38 -2.84 16 4 C -0.07 -0.81 10.12 -39.18 -0.40 -1.20 16 5 C -0.01 -0.11 6.75 -38.92 -0.26 -0.37 16 6 O -0.49 -5.13 12.77 -19.66 -0.25 -5.39 16 7 C 0.37 6.15 7.45 -154.44 -1.15 5.00 16 8 N -0.67 -10.95 5.39 -11.29 -0.06 -11.01 16 9 C 0.49 10.14 7.54 -10.98 -0.08 10.06 16 10 O -0.42 -10.69 13.24 5.56 0.07 -10.61 16 11 C -0.12 -2.28 4.94 -27.88 -0.14 -2.41 16 12 C 0.08 1.88 1.68 -92.92 -0.16 1.73 16 13 H 0.07 2.03 6.95 -51.93 -0.36 1.67 16 14 C -0.49 -13.24 6.38 -34.44 -0.22 -13.46 16 15 H 0.05 1.32 7.82 -52.49 -0.41 0.91 16 16 C 0.08 2.23 5.45 -17.82 -0.10 2.14 16 17 N -0.88 -25.89 12.85 55.43 0.71 -25.18 16 18 Si 0.88 22.29 29.54 -169.99 -5.02 17.27 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 21 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 22 C -0.02 -0.49 4.77 -104.62 -0.50 -0.99 16 23 C -0.11 -2.29 8.86 -39.58 -0.35 -2.64 16 24 C -0.13 -2.36 10.05 -39.58 -0.40 -2.76 16 25 C -0.15 -2.69 10.05 -39.58 -0.40 -3.08 16 26 C -0.13 -2.37 10.05 -39.58 -0.40 -2.77 16 27 C -0.12 -2.50 9.67 -39.58 -0.38 -2.89 16 28 N -0.46 -8.73 7.79 -8.46 -0.07 -8.80 16 29 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.07 0.69 8.07 -51.93 -0.42 0.27 16 32 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 33 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 34 H 0.38 2.26 9.06 45.56 0.41 2.68 16 35 H 0.41 5.15 8.05 -40.82 -0.33 4.82 16 36 H 0.08 1.37 7.76 -51.93 -0.40 0.96 16 37 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.11 2.17 7.75 -52.49 -0.41 1.76 16 40 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 41 H 0.10 1.50 8.06 -52.49 -0.42 1.08 16 42 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 43 H 0.11 2.44 7.95 -52.49 -0.42 2.03 16 LS Contribution 369.76 15.07 5.57 5.57 Total: -1.00 -35.10 369.76 -9.40 -44.50 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -4.85 Total: 9.25 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: -5.51 Total: -15.61 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: 0.59 Total: -44.98 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: -0.18 Total: -16.00 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.10 -9.40 -44.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357166344.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.284 kcal (2) G-P(sol) polarization free energy of solvation -35.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds