Wall clock time and date at job start Tue Mar 31 2020 14:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50696 * 109.46759 * 2 1 4 4 N 1.30426 * 125.98886 * 270.19933 * 3 2 1 5 5 N 1.39914 * 108.99522 * 180.24113 * 4 3 2 6 6 C 1.46500 * 125.73616 * 179.69962 * 5 4 3 7 7 C 1.34377 * 108.53327 * 359.73858 * 5 4 3 8 8 C 1.38388 * 107.34946 * 359.97438 * 7 5 4 9 9 C 1.46866 * 126.45241 * 179.97438 * 8 7 5 10 10 C 1.35292 * 120.00466 * 0.29697 * 9 8 7 11 11 C 1.41634 * 120.00245 * 179.72546 * 10 9 8 12 12 O 1.21812 * 120.00031 * 0.02562 * 11 10 9 13 13 C 1.47716 * 119.99966 * 179.97438 * 11 10 9 14 14 C 1.39776 * 120.07339 * 359.72928 * 13 11 10 15 15 C 1.37655 * 119.92088 * 179.81123 * 14 13 11 16 16 C 1.39145 * 120.07732 * 0.43849 * 15 14 13 17 17 O 1.35570 * 119.92669 * 179.76934 * 16 15 14 18 18 C 1.34785 * 116.99829 * 174.46886 * 17 16 15 19 19 H 1.07991 * 120.00686 * 5.05934 * 18 17 16 20 20 C 1.38738 * 119.99627 * 185.05626 * 18 17 16 21 21 N 1.31502 * 119.99938 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 120.00233 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.46872 * 90.00286 * 22 20 18 24 24 H 1.48500 * 109.47703 * 209.99954 * 22 20 18 25 25 H 1.48498 * 109.47228 * 330.00399 * 22 20 18 26 26 C 1.39151 * 120.15103 * 359.78700 * 16 15 14 27 27 C 1.37651 * 120.07238 * 0.02562 * 26 16 15 28 28 H 1.08998 * 109.47050 * 59.99848 * 1 2 3 29 29 H 1.09002 * 109.46986 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46914 * 299.99678 * 1 2 3 31 31 H 1.09004 * 109.46715 * 240.00487 * 2 1 3 32 32 H 1.08998 * 109.47050 * 120.00152 * 2 1 3 33 33 H 1.09005 * 109.47045 * 270.04180 * 6 5 4 34 34 H 1.08999 * 109.47087 * 30.04292 * 6 5 4 35 35 H 1.09003 * 109.47108 * 150.04735 * 6 5 4 36 36 H 1.08001 * 126.32670 * 179.97438 * 7 5 4 37 37 H 1.08000 * 119.99788 * 180.02562 * 9 8 7 38 38 H 1.08000 * 119.99696 * 359.72270 * 10 9 8 39 39 H 1.08000 * 120.04106 * 359.97438 * 14 13 11 40 40 H 1.08003 * 119.95988 * 180.18500 * 15 14 13 41 41 H 0.96997 * 119.99519 * 180.02562 * 21 20 18 42 42 H 1.08003 * 119.96179 * 179.97438 * 26 16 15 43 43 H 1.08008 * 120.03744 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2843 2.1446 -1.0553 5 7 2.7368 3.4039 -0.6464 6 6 3.1300 4.5014 -1.5336 7 6 2.7510 3.4371 0.6969 8 6 2.3089 2.2047 1.1449 9 6 2.1616 1.7867 2.5451 10 6 2.4666 2.6471 3.5436 11 6 2.3190 2.2460 4.8939 12 8 1.9179 1.1261 5.1563 13 6 2.6525 3.1852 5.9841 14 6 3.1193 4.4683 5.6849 15 6 3.4255 5.3424 6.7033 16 6 3.2795 4.9469 8.0293 17 8 3.5864 5.8086 9.0299 18 6 3.3155 5.4072 10.2878 19 1 2.9501 4.4072 10.4687 20 6 3.5061 6.2788 11.3502 21 7 3.2423 5.8871 12.5775 22 14 4.1388 8.0083 11.0376 23 1 2.9901 8.9231 10.8164 24 1 4.9199 8.4699 12.2132 25 1 5.0093 8.0070 9.8345 26 6 2.8195 3.6686 8.3308 27 6 2.5079 2.7909 7.3173 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8900 33 1 4.1946 4.4258 -1.7552 34 1 2.5606 4.4406 -2.4611 35 1 2.9274 5.4543 -1.0446 36 1 3.0519 4.2716 1.3130 37 1 1.8057 0.7939 2.7777 38 1 2.8226 3.6399 3.3111 39 1 3.2371 4.7745 4.6560 40 1 3.7834 6.3350 6.4728 41 1 3.3752 6.4966 13.3202 42 1 2.7078 3.3647 9.3611 43 1 2.1513 1.7987 7.5519 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092198735.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:27 Heat of formation + Delta-G solvation = 48.238967 kcal Electronic energy + Delta-G solvation = -25365.789999 eV Core-core repulsion = 21571.932983 eV Total energy + Delta-G solvation = -3793.857016 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.56451 -39.65690 -38.68636 -36.33613 -35.31394 -33.83731 -32.58875 -31.94748 -30.55427 -30.10565 -29.09607 -27.16317 -25.66602 -24.47526 -23.48924 -22.17048 -21.96418 -20.51965 -19.68566 -18.65592 -17.82306 -17.69819 -17.15338 -15.97547 -15.90554 -15.41321 -15.05026 -14.66006 -14.51284 -14.21557 -14.13687 -13.87893 -13.83612 -13.70094 -13.58818 -13.24929 -12.98654 -12.92736 -12.44756 -12.40899 -12.38197 -11.94015 -11.72772 -11.53759 -11.47762 -11.40241 -10.87540 -10.85481 -10.77607 -10.44604 -10.26460 -9.65635 -9.55999 -9.27772 -9.02620 -8.41652 -8.12985 -7.50627 -6.58681 -4.23348 0.64058 1.52638 1.84029 2.05791 2.08825 2.75407 3.12231 3.16104 3.29288 3.62532 4.00238 4.09763 4.30942 4.50369 4.51478 4.57358 4.67096 4.68466 4.76266 4.94381 4.96088 5.01003 5.04846 5.14587 5.25910 5.35285 5.36493 5.53504 5.58149 5.62700 5.78635 5.82015 5.92852 6.00866 6.09952 6.21196 6.37994 6.43428 6.49417 6.55768 6.68184 6.88765 7.04793 7.19733 7.34299 7.44607 7.66060 7.86119 8.13385 8.74505 9.34474 10.47605 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.021420 B = 0.002146 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.847367 B =13045.735888 C =14228.903912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.047 4.047 3 C 0.105 3.895 4 N -0.301 5.301 5 N -0.367 5.367 6 C 0.098 3.902 7 C 0.086 3.914 8 C -0.229 4.229 9 C 0.030 3.970 10 C -0.249 4.249 11 C 0.432 3.568 12 O -0.495 6.495 13 C -0.258 4.258 14 C -0.031 4.031 15 C -0.206 4.206 16 C 0.181 3.819 17 O -0.202 6.202 18 C -0.392 4.392 19 H 0.111 0.889 20 C 0.066 3.934 21 N -0.866 5.866 22 Si 0.907 3.093 23 H -0.271 1.271 24 H -0.280 1.280 25 H -0.258 1.258 26 C -0.237 4.237 27 C -0.012 4.012 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.183 0.817 37 H 0.133 0.867 38 H 0.123 0.877 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.283 0.717 42 H 0.138 0.862 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.100 -3.639 -26.151 26.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.086 4.086 3 C -0.062 4.062 4 N -0.122 5.122 5 N -0.145 5.145 6 C -0.043 4.043 7 C -0.063 4.063 8 C -0.240 4.240 9 C 0.010 3.990 10 C -0.269 4.269 11 C 0.319 3.681 12 O -0.378 6.378 13 C -0.260 4.260 14 C -0.050 4.050 15 C -0.226 4.226 16 C 0.126 3.874 17 O -0.105 6.105 18 C -0.467 4.467 19 H 0.129 0.871 20 C -0.139 4.139 21 N -0.502 5.502 22 Si 0.732 3.268 23 H -0.196 1.196 24 H -0.205 1.205 25 H -0.182 1.182 26 C -0.256 4.256 27 C -0.031 4.031 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.099 0.901 32 H 0.106 0.894 33 H 0.097 0.903 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.200 0.800 37 H 0.151 0.849 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.093 0.907 42 H 0.155 0.845 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.126 -3.693 -27.155 27.428 hybrid contribution 0.386 1.072 1.033 1.538 sum -0.739 -2.621 -26.122 26.264 Atomic orbital electron populations 1.21719 0.93866 1.02300 1.02527 1.20038 0.96469 0.88312 1.03817 1.22601 0.96979 0.96864 0.89753 1.77065 1.21389 0.90688 1.23029 1.48232 1.49719 1.11613 1.04901 1.21962 1.01663 0.86044 0.94609 1.23225 0.98816 0.99418 0.84799 1.19376 1.16148 0.94509 0.93982 1.21784 0.89840 0.98699 0.88687 1.22351 1.08777 1.01466 0.94290 1.18964 0.74020 0.86340 0.88801 1.90593 1.38385 1.21663 1.87197 1.19887 1.15198 0.96644 0.94228 1.20825 0.94382 0.91957 0.97787 1.20144 1.11513 1.01049 0.89859 1.19382 0.90578 0.89102 0.88322 1.83500 1.70487 1.41175 1.15290 1.20895 1.45459 1.01934 0.78430 0.87132 1.24548 0.95850 0.99876 0.93662 1.69616 1.44776 1.37360 0.98469 0.86156 0.79731 0.82235 0.78680 1.19648 1.20533 1.18211 1.21253 1.09368 0.94419 1.00561 1.20981 0.92571 0.98270 0.91254 0.92548 0.91659 0.92055 0.90136 0.89397 0.90335 0.89037 0.89047 0.79971 0.84882 0.85956 0.86221 0.86069 0.90666 0.84466 0.86078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.89 37.16 0.37 -0.73 16 2 C -0.05 -0.39 6.33 -27.88 -0.18 -0.56 16 3 C 0.11 1.11 6.52 -81.96 -0.53 0.58 16 4 N -0.30 -3.34 12.49 33.93 0.42 -2.91 16 5 N -0.37 -3.22 3.98 -67.47 -0.27 -3.49 16 6 C 0.10 0.43 11.44 59.85 0.68 1.11 16 7 C 0.09 0.76 10.89 -16.38 -0.18 0.58 16 8 C -0.23 -2.43 6.09 -105.12 -0.64 -3.07 16 9 C 0.03 0.35 9.38 -37.14 -0.35 0.00 16 10 C -0.25 -3.14 8.86 -39.34 -0.35 -3.49 16 11 C 0.43 7.05 6.90 -34.42 -0.24 6.82 16 12 O -0.49 -9.26 16.11 5.09 0.08 -9.18 16 13 C -0.26 -4.54 5.88 -104.87 -0.62 -5.16 16 14 C -0.03 -0.50 9.42 -39.22 -0.37 -0.87 16 15 C -0.21 -3.81 9.97 -39.46 -0.39 -4.20 16 16 C 0.18 4.00 6.66 -38.91 -0.26 3.75 16 17 O -0.20 -5.07 8.57 0.73 0.01 -5.06 16 18 C -0.39 -10.61 9.94 30.92 0.31 -10.30 16 19 H 0.11 3.06 5.42 -52.49 -0.28 2.78 16 20 C 0.07 1.78 5.49 -17.51 -0.10 1.68 16 21 N -0.87 -24.07 13.96 55.48 0.77 -23.30 16 22 Si 0.91 20.62 28.62 -169.99 -4.86 15.75 16 23 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 24 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 25 H -0.26 -5.86 7.11 56.52 0.40 -5.45 16 26 C -0.24 -5.06 9.15 -39.46 -0.36 -5.42 16 27 C -0.01 -0.24 9.58 -39.22 -0.38 -0.61 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.09 0.66 7.68 -51.93 -0.40 0.26 16 33 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 34 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 36 H 0.18 1.03 7.28 -52.49 -0.38 0.65 16 37 H 0.13 1.57 7.09 -52.49 -0.37 1.20 16 38 H 0.12 1.23 5.07 -52.49 -0.27 0.96 16 39 H 0.12 1.42 6.19 -52.49 -0.32 1.10 16 40 H 0.12 2.01 8.06 -52.48 -0.42 1.58 16 41 H 0.28 7.23 8.31 -40.82 -0.34 6.89 16 42 H 0.14 3.05 5.62 -52.48 -0.29 2.76 16 43 H 0.12 2.23 7.64 -52.48 -0.40 1.83 16 LS Contribution 372.82 15.07 5.62 5.62 Total: -1.00 -32.49 372.82 -7.05 -39.54 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -5.24 Total: 2.94 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: -3.58 Total: -19.91 kcal Atomic # 7 Polarization: -30.63 SS G_CDS: 0.93 Total: -29.70 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: 0.09 Total: -14.24 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.86 Total: 15.75 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.49 -7.05 -39.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092198735.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.780 kcal (2) G-P(sol) polarization free energy of solvation -32.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds