Wall clock time and date at job start Tue Mar 31 2020 14:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50696 * 109.46759 * 2 1 4 4 N 1.30426 * 125.98886 * 270.19933 * 3 2 1 5 5 N 1.39914 * 108.99522 * 180.24113 * 4 3 2 6 6 C 1.46500 * 125.73616 * 179.69962 * 5 4 3 7 7 C 1.34377 * 108.53327 * 359.73858 * 5 4 3 8 8 C 1.38388 * 107.34946 * 359.97438 * 7 5 4 9 9 C 1.46866 * 126.45241 * 179.97438 * 8 7 5 10 10 C 1.35292 * 120.00466 * 0.29697 * 9 8 7 11 11 C 1.41634 * 120.00245 * 179.72546 * 10 9 8 12 12 O 1.21812 * 120.00031 * 0.02562 * 11 10 9 13 13 C 1.47716 * 119.99966 * 179.97438 * 11 10 9 14 14 C 1.39776 * 120.07339 * 359.72928 * 13 11 10 15 15 C 1.37655 * 119.92088 * 179.81123 * 14 13 11 16 16 C 1.39145 * 120.07732 * 0.43849 * 15 14 13 17 17 O 1.35570 * 119.92669 * 179.76934 * 16 15 14 18 18 C 1.34785 * 116.99829 * 174.46886 * 17 16 15 19 19 H 1.07991 * 120.00686 * 5.05934 * 18 17 16 20 20 C 1.38738 * 119.99627 * 185.05626 * 18 17 16 21 21 N 1.31502 * 119.99938 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 120.00233 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.46872 * 90.00286 * 22 20 18 24 24 H 1.48500 * 109.47703 * 209.99954 * 22 20 18 25 25 H 1.48498 * 109.47228 * 330.00399 * 22 20 18 26 26 C 1.39151 * 120.15103 * 359.78700 * 16 15 14 27 27 C 1.37651 * 120.07238 * 0.02562 * 26 16 15 28 28 H 1.08998 * 109.47050 * 59.99848 * 1 2 3 29 29 H 1.09002 * 109.46986 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46914 * 299.99678 * 1 2 3 31 31 H 1.09004 * 109.46715 * 240.00487 * 2 1 3 32 32 H 1.08998 * 109.47050 * 120.00152 * 2 1 3 33 33 H 1.09005 * 109.47045 * 270.04180 * 6 5 4 34 34 H 1.08999 * 109.47087 * 30.04292 * 6 5 4 35 35 H 1.09003 * 109.47108 * 150.04735 * 6 5 4 36 36 H 1.08001 * 126.32670 * 179.97438 * 7 5 4 37 37 H 1.08000 * 119.99788 * 180.02562 * 9 8 7 38 38 H 1.08000 * 119.99696 * 359.72270 * 10 9 8 39 39 H 1.08000 * 120.04106 * 359.97438 * 14 13 11 40 40 H 1.08003 * 119.95988 * 180.18500 * 15 14 13 41 41 H 0.96997 * 119.99519 * 180.02562 * 21 20 18 42 42 H 1.08003 * 119.96179 * 179.97438 * 26 16 15 43 43 H 1.08008 * 120.03744 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2843 2.1446 -1.0553 5 7 2.7368 3.4039 -0.6464 6 6 3.1300 4.5014 -1.5336 7 6 2.7510 3.4371 0.6969 8 6 2.3089 2.2047 1.1449 9 6 2.1616 1.7867 2.5451 10 6 2.4666 2.6471 3.5436 11 6 2.3190 2.2460 4.8939 12 8 1.9179 1.1261 5.1563 13 6 2.6525 3.1852 5.9841 14 6 3.1193 4.4683 5.6849 15 6 3.4255 5.3424 6.7033 16 6 3.2795 4.9469 8.0293 17 8 3.5864 5.8086 9.0299 18 6 3.3155 5.4072 10.2878 19 1 2.9501 4.4072 10.4687 20 6 3.5061 6.2788 11.3502 21 7 3.2423 5.8871 12.5775 22 14 4.1388 8.0083 11.0376 23 1 2.9901 8.9231 10.8164 24 1 4.9199 8.4699 12.2132 25 1 5.0093 8.0070 9.8345 26 6 2.8195 3.6686 8.3308 27 6 2.5079 2.7909 7.3173 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8900 33 1 4.1946 4.4258 -1.7552 34 1 2.5606 4.4406 -2.4611 35 1 2.9274 5.4543 -1.0446 36 1 3.0519 4.2716 1.3130 37 1 1.8057 0.7939 2.7777 38 1 2.8226 3.6399 3.3111 39 1 3.2371 4.7745 4.6560 40 1 3.7834 6.3350 6.4728 41 1 3.3752 6.4966 13.3202 42 1 2.7078 3.3647 9.3611 43 1 2.1513 1.7987 7.5519 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092198735.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:26 Heat of formation + Delta-G solvation = 29.676571 kcal Electronic energy + Delta-G solvation = -25366.594925 eV Core-core repulsion = 21571.932983 eV Total energy + Delta-G solvation = -3794.661942 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.25678 -41.17878 -40.18657 -37.92098 -35.97440 -34.74755 -34.52915 -32.54418 -31.99218 -31.53895 -30.05947 -27.88209 -27.41622 -25.54677 -24.22567 -23.64245 -23.13890 -21.60406 -20.46256 -20.15144 -19.33713 -19.14099 -18.15250 -17.10299 -16.75963 -16.51358 -16.30324 -15.86251 -15.78776 -15.59227 -15.42917 -15.28195 -15.06364 -14.62478 -14.48793 -14.29151 -14.10083 -14.08360 -13.84093 -13.43203 -13.27950 -13.07617 -12.96016 -12.82282 -12.51593 -12.44200 -12.23096 -12.10552 -11.94468 -11.56484 -11.35266 -11.31314 -10.94855 -10.62177 -10.32493 -9.92610 -9.23484 -8.87164 -8.54349 -6.27941 -0.44474 0.40689 0.54814 0.95411 1.33645 1.37293 1.53454 1.53666 1.78249 2.26628 2.42452 2.83544 2.97806 3.17509 3.35822 3.44674 3.75084 3.96354 4.01320 4.07864 4.18534 4.30646 4.32606 4.42482 4.44032 4.46106 4.55230 4.61067 4.64528 4.71935 4.73350 4.73552 4.86693 5.05073 5.14449 5.16204 5.23945 5.30109 5.41321 5.46697 5.47978 5.62538 5.68117 5.73911 5.81803 5.98721 6.12096 6.64481 6.77924 6.85302 7.46731 8.56462 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.021420 B = 0.002146 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.847367 B =13045.735888 C =14228.903912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.050 4.050 3 C 0.098 3.902 4 N -0.333 5.333 5 N -0.366 5.366 6 C 0.087 3.913 7 C 0.106 3.894 8 C -0.262 4.262 9 C 0.061 3.939 10 C -0.269 4.269 11 C 0.435 3.565 12 O -0.528 6.528 13 C -0.246 4.246 14 C -0.010 4.010 15 C -0.198 4.198 16 C 0.151 3.849 17 O -0.226 6.226 18 C -0.407 4.407 19 H 0.081 0.919 20 C 0.012 3.988 21 N -0.916 5.916 22 Si 0.975 3.025 23 H -0.263 1.263 24 H -0.268 1.268 25 H -0.256 1.256 26 C -0.252 4.252 27 C -0.026 4.026 28 H 0.050 0.950 29 H 0.079 0.921 30 H 0.051 0.949 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.121 0.879 36 H 0.222 0.778 37 H 0.123 0.877 38 H 0.158 0.842 39 H 0.180 0.820 40 H 0.150 0.850 41 H 0.287 0.713 42 H 0.112 0.888 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.327 -1.739 -30.690 30.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.089 4.089 3 C -0.068 4.068 4 N -0.155 5.155 5 N -0.142 5.142 6 C -0.052 4.052 7 C -0.045 4.045 8 C -0.273 4.273 9 C 0.041 3.959 10 C -0.289 4.289 11 C 0.324 3.676 12 O -0.414 6.414 13 C -0.248 4.248 14 C -0.028 4.028 15 C -0.217 4.217 16 C 0.100 3.900 17 O -0.132 6.132 18 C -0.483 4.483 19 H 0.099 0.901 20 C -0.188 4.188 21 N -0.556 5.556 22 Si 0.796 3.204 23 H -0.188 1.188 24 H -0.193 1.193 25 H -0.180 1.180 26 C -0.271 4.271 27 C -0.045 4.045 28 H 0.069 0.931 29 H 0.098 0.902 30 H 0.070 0.930 31 H 0.105 0.895 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.139 0.861 36 H 0.238 0.762 37 H 0.141 0.859 38 H 0.175 0.825 39 H 0.197 0.803 40 H 0.167 0.833 41 H 0.097 0.903 42 H 0.129 0.871 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.359 -1.816 -31.766 31.820 hybrid contribution 0.056 0.193 1.899 1.910 sum -0.303 -1.623 -29.867 29.913 Atomic orbital electron populations 1.21677 0.93471 1.03061 1.01706 1.20128 0.96772 0.87710 1.04319 1.22923 0.96507 0.97577 0.89835 1.77039 1.22629 0.92061 1.23725 1.48660 1.48335 1.11560 1.05678 1.22355 1.02454 0.85855 0.94522 1.23831 0.96166 0.99457 0.85044 1.19415 1.18787 0.95908 0.93223 1.21800 0.86844 0.97948 0.89336 1.22182 1.11603 1.03406 0.91693 1.19261 0.72943 0.85359 0.90064 1.90599 1.40046 1.22966 1.87756 1.20370 1.12796 0.97887 0.93735 1.21393 0.91303 0.90072 1.00009 1.20599 1.10066 1.02731 0.88261 1.19977 0.91497 0.89031 0.89524 1.83460 1.73255 1.41873 1.14609 1.20756 1.46329 1.01166 0.80048 0.90134 1.25400 0.96174 1.03966 0.93243 1.69709 1.47425 1.39031 0.99394 0.85158 0.79326 0.77144 0.78757 1.18815 1.19323 1.17980 1.21193 1.10581 0.95318 1.00039 1.21077 0.93148 0.98095 0.92150 0.93083 0.90178 0.93025 0.89539 0.88986 0.89049 0.88934 0.86080 0.76183 0.85880 0.82475 0.80280 0.83272 0.90294 0.87063 0.86157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.89 71.98 0.71 -1.22 16 2 C -0.05 -0.75 6.33 29.85 0.19 -0.56 16 3 C 0.10 1.86 6.52 43.57 0.28 2.14 16 4 N -0.33 -6.56 12.49 -46.57 -0.58 -7.14 16 5 N -0.37 -4.95 3.98 -367.37 -1.46 -6.41 16 6 C 0.09 0.38 11.44 127.77 1.46 1.84 16 7 C 0.11 1.32 10.89 84.34 0.92 2.24 16 8 C -0.26 -4.65 6.09 -20.18 -0.12 -4.77 16 9 C 0.06 1.22 9.38 23.85 0.22 1.45 16 10 C -0.27 -5.61 8.86 22.43 0.20 -5.41 16 11 C 0.43 13.07 6.90 25.62 0.18 13.25 16 12 O -0.53 -19.28 16.11 -4.71 -0.08 -19.36 16 13 C -0.25 -8.08 5.88 -20.03 -0.12 -8.20 16 14 C -0.01 -0.27 9.42 22.50 0.21 -0.06 16 15 C -0.20 -6.68 9.97 22.35 0.22 -6.46 16 16 C 0.15 6.75 6.66 22.71 0.15 6.90 16 17 O -0.23 -11.70 8.57 -20.31 -0.17 -11.87 16 18 C -0.41 -23.39 9.94 67.94 0.68 -22.72 16 19 H 0.08 4.93 5.42 -2.92 -0.02 4.91 16 20 C 0.01 0.67 5.49 84.86 0.47 1.13 16 21 N -0.92 -53.67 13.96 21.63 0.30 -53.37 16 22 Si 0.97 43.30 28.62 68.60 1.96 45.26 16 23 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 24 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 25 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 26 C -0.25 -11.33 9.15 22.35 0.20 -11.12 16 27 C -0.03 -1.03 9.58 22.50 0.22 -0.82 16 28 H 0.05 0.74 8.14 -2.39 -0.02 0.73 16 29 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.09 1.26 7.68 -2.39 -0.02 1.24 16 33 H 0.09 0.21 8.14 -2.38 -0.02 0.19 16 34 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.12 -0.16 8.14 -2.39 -0.02 -0.18 16 36 H 0.22 0.86 7.28 -2.91 -0.02 0.84 16 37 H 0.12 2.70 7.09 -2.91 -0.02 2.68 16 38 H 0.16 2.04 5.07 -2.91 -0.01 2.03 16 39 H 0.18 2.80 6.19 -2.91 -0.02 2.79 16 40 H 0.15 4.25 8.06 -2.91 -0.02 4.23 16 41 H 0.29 15.35 8.31 -92.71 -0.77 14.58 16 42 H 0.11 5.51 5.62 -2.91 -0.02 5.49 16 43 H 0.12 4.64 7.64 -2.91 -0.02 4.61 16 Total: -1.00 -76.52 372.82 7.09 -69.43 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: 1.04 Total: 15.85 kcal Atomic # 6 Polarization: -38.46 SS G_CDS: 6.07 Total: -32.39 kcal Atomic # 7 Polarization: -65.18 SS G_CDS: -1.74 Total: -66.92 kcal Atomic # 8 Polarization: -30.98 SS G_CDS: -0.25 Total: -31.23 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 1.96 Total: 45.26 kcal Total: -76.52 7.09 -69.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092198735.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.108 kcal (2) G-P(sol) polarization free energy of solvation -76.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds