Wall clock time and date at job start Tue Mar 31 2020 14:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47265 * 2 1 4 4 C 1.53001 * 109.47319 * 59.99668 * 3 2 1 5 5 O 1.42906 * 109.46971 * 299.99527 * 3 2 1 6 6 C 1.52997 * 109.47265 * 180.02562 * 3 2 1 7 7 N 1.46501 * 109.47329 * 184.99611 * 6 3 2 8 8 C 1.34772 * 120.00031 * 179.97438 * 7 6 3 9 9 O 1.21595 * 120.00168 * 0.02562 * 8 7 6 10 10 N 1.34782 * 120.00069 * 180.02562 * 8 7 6 11 11 C 1.40132 * 120.00234 * 176.06943 * 10 8 7 12 12 C 1.38691 * 120.07629 * 25.48553 * 11 10 8 13 13 C 1.38197 * 120.02479 * 180.25427 * 12 11 10 14 14 C 1.38551 * 120.17254 * 0.05266 * 13 12 11 15 15 F 1.35096 * 119.92673 * 179.97438 * 14 13 12 16 16 C 1.38346 * 120.14911 * 359.95055 * 14 13 12 17 17 C 1.38736 * 119.97609 * 0.02628 * 16 14 13 18 18 O 1.35780 * 120.08513 * 180.02562 * 17 16 14 19 19 C 1.34811 * 116.99912 * 5.62509 * 18 17 16 20 20 H 1.07990 * 120.00163 * 5.36630 * 19 18 17 21 21 C 1.38637 * 119.99522 * 185.37054 * 19 18 17 22 22 N 1.31566 * 120.00692 * 359.97438 * 21 19 18 23 23 Si 1.86810 * 119.99560 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46726 * 90.00082 * 23 21 19 25 25 H 1.48501 * 109.46807 * 209.99969 * 23 21 19 26 26 H 1.48498 * 109.46794 * 330.00334 * 23 21 19 27 27 H 1.09001 * 109.47395 * 60.00388 * 1 2 3 28 28 H 1.09004 * 109.47424 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47173 * 300.00287 * 1 2 3 30 30 H 1.09003 * 109.47173 * 239.99712 * 2 1 3 31 31 H 1.09005 * 109.47135 * 120.00051 * 2 1 3 32 32 H 1.08994 * 109.46930 * 180.02562 * 4 3 2 33 33 H 1.09000 * 109.47014 * 300.00081 * 4 3 2 34 34 H 1.09005 * 109.46705 * 60.00179 * 4 3 2 35 35 H 0.96696 * 113.99665 * 300.00555 * 5 3 2 36 36 H 1.09000 * 109.47269 * 64.99428 * 6 3 2 37 37 H 1.08999 * 109.47236 * 304.99847 * 6 3 2 38 38 H 0.97000 * 119.99480 * 0.02562 * 7 6 3 39 39 H 0.96999 * 119.99441 * 356.06182 * 10 8 7 40 40 H 1.07997 * 119.99135 * 0.28287 * 12 11 10 41 41 H 1.08000 * 119.91876 * 180.02562 * 13 12 11 42 42 H 1.08002 * 120.01095 * 180.02562 * 16 14 13 43 43 H 0.96993 * 120.00504 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1638 1.2492 5 8 1.5637 2.1161 -1.1669 6 6 3.5700 1.4425 -0.0006 7 7 4.0584 2.8184 0.1196 8 6 5.3834 3.0637 0.1411 9 8 6.1736 2.1430 0.0601 10 7 5.8328 4.3295 0.2523 11 6 7.2079 4.5782 0.3575 12 6 8.1200 3.6710 -0.1608 13 6 9.4759 3.9148 -0.0517 14 6 9.9285 5.0641 0.5758 15 9 11.2551 5.2972 0.6801 16 6 9.0250 5.9739 1.0954 17 6 7.6624 5.7356 0.9889 18 8 6.7737 6.6272 1.4977 19 6 7.2748 7.7781 1.9894 20 1 8.3280 7.9949 1.8890 21 6 6.4381 8.6832 2.6239 22 7 5.1549 8.4193 2.7459 23 14 7.1326 10.2776 3.3059 24 1 7.0703 11.3314 2.2614 25 1 6.3345 10.7010 4.4845 26 1 8.5449 10.0678 3.7138 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.8930 3.1915 1.2489 33 1 0.4400 2.1638 1.2491 34 1 1.8933 1.6500 2.1392 35 1 1.8491 1.7125 -1.9980 36 1 3.9329 1.0082 -0.9322 37 1 3.9337 0.8529 0.8409 38 1 3.4281 3.5528 0.1846 39 1 5.2043 5.0683 0.2593 40 1 7.7705 2.7739 -0.6501 41 1 10.1846 3.2074 -0.4563 42 1 9.3803 6.8693 1.5837 43 1 4.5696 9.0523 3.1901 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135266580.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:23 Heat of formation + Delta-G solvation = -127.805556 kcal Electronic energy + Delta-G solvation = -27675.338762 eV Core-core repulsion = 23443.078658 eV Total energy + Delta-G solvation = -4232.260104 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.147 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.20496 -40.38309 -39.23908 -38.41168 -36.34785 -34.29804 -34.04513 -33.37132 -32.38886 -29.92097 -29.30516 -28.28960 -26.84543 -25.47702 -23.74565 -22.35833 -21.56109 -20.63420 -20.35898 -18.41146 -18.24084 -17.73820 -16.96187 -16.41393 -15.87886 -15.53337 -15.21572 -15.16723 -14.89603 -14.88346 -14.77086 -14.27117 -14.01936 -13.80580 -13.57598 -13.48535 -13.18669 -12.65748 -12.63000 -12.42242 -12.30856 -12.23402 -12.14934 -11.89455 -11.65568 -11.36300 -11.25661 -10.95212 -10.80479 -10.73000 -10.53559 -10.21190 -9.83716 -9.78301 -9.39997 -8.99322 -8.94438 -7.83055 -7.01881 -6.58832 -4.16501 1.90045 2.16250 2.86992 3.07187 3.08821 3.13262 3.44810 3.86042 3.95890 4.35391 4.40757 4.43488 4.57959 4.60269 4.88958 4.98665 4.99482 5.15138 5.15462 5.31121 5.46282 5.54870 5.59574 5.63894 5.68012 5.68843 5.76936 5.78711 5.97505 6.07018 6.09082 6.23357 6.48693 6.69475 6.71102 6.94786 7.00562 7.10322 7.17046 7.32340 7.40035 7.71299 7.85447 8.27745 8.83363 8.87765 9.48927 10.58384 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.011201 B = 0.003364 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2499.193105 B = 8321.835217 C =10589.769788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.146 4.146 3 C 0.119 3.881 4 C -0.144 4.144 5 O -0.553 6.553 6 C 0.117 3.883 7 N -0.740 5.740 8 C 0.703 3.297 9 O -0.588 6.588 10 N -0.662 5.662 11 C 0.082 3.918 12 C -0.066 4.066 13 C -0.226 4.226 14 C 0.123 3.877 15 F -0.153 7.153 16 C -0.256 4.256 17 C 0.153 3.847 18 O -0.171 6.171 19 C -0.392 4.392 20 H 0.094 0.906 21 C 0.043 3.957 22 N -0.860 5.860 23 Si 0.942 3.058 24 H -0.272 1.272 25 H -0.277 1.277 26 H -0.266 1.266 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.376 0.624 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.402 0.598 39 H 0.413 0.587 40 H 0.157 0.843 41 H 0.122 0.878 42 H 0.142 0.858 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.587 -12.297 -5.420 15.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.185 4.185 3 C 0.078 3.922 4 C -0.201 4.201 5 O -0.359 6.359 6 C -0.009 4.009 7 N -0.397 5.397 8 C 0.404 3.596 9 O -0.467 6.467 10 N -0.307 5.307 11 C -0.014 4.014 12 C -0.087 4.087 13 C -0.246 4.246 14 C 0.103 3.897 15 F -0.131 7.131 16 C -0.277 4.277 17 C 0.097 3.903 18 O -0.074 6.074 19 C -0.467 4.467 20 H 0.111 0.889 21 C -0.162 4.162 22 N -0.495 5.495 23 Si 0.766 3.234 24 H -0.198 1.198 25 H -0.202 1.202 26 H -0.191 1.191 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.224 0.776 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.238 0.762 39 H 0.249 0.751 40 H 0.174 0.826 41 H 0.140 0.860 42 H 0.160 0.840 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.630 -12.628 -4.890 15.543 hybrid contribution 0.384 1.215 0.137 1.281 sum -7.246 -11.413 -4.753 14.331 Atomic orbital electron populations 1.21733 0.94755 1.01405 1.02740 1.22120 0.97414 0.95797 1.03121 1.21499 0.90989 0.92291 0.87373 1.21821 1.02199 1.01210 0.94873 1.86579 1.76759 1.57033 1.15546 1.21835 0.93257 0.83101 1.02660 1.44997 1.05354 1.09281 1.80036 1.15880 0.82467 0.83127 0.78093 1.90792 1.54121 1.43737 1.58039 1.42208 1.06635 1.06923 1.74976 1.16735 0.82099 0.96459 1.06072 1.21068 0.90778 0.99222 0.97611 1.20535 0.96057 0.98619 1.09372 1.17484 0.76491 0.95590 1.00157 1.91403 1.32403 1.94793 1.94549 1.20822 0.92010 1.03432 1.11436 1.18733 0.88723 0.89917 0.92920 1.83925 1.31576 1.25598 1.66344 1.21329 0.95664 0.92393 1.37363 0.88884 1.25269 0.95233 0.99419 0.96276 1.70003 1.03303 1.36265 1.39904 0.85694 0.78974 0.80091 0.78643 1.19770 1.20194 1.19082 0.92008 0.92877 0.92267 0.91400 0.90683 0.91518 0.91225 0.90819 0.77621 0.91471 0.90805 0.76241 0.75114 0.82586 0.86028 0.84003 0.91874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.41 37.16 0.35 -0.65 16 2 C -0.15 -1.00 5.17 -26.73 -0.14 -1.14 16 3 C 0.12 1.02 0.75 -90.62 -0.07 0.95 16 4 C -0.14 -1.32 8.26 37.16 0.31 -1.01 16 5 O -0.55 -4.94 12.25 -35.23 -0.43 -5.37 16 6 C 0.12 1.25 4.81 -4.04 -0.02 1.23 16 7 N -0.74 -9.79 5.19 -65.22 -0.34 -10.12 16 8 C 0.70 12.22 8.45 -86.92 -0.73 11.48 16 9 O -0.59 -11.55 13.27 5.28 0.07 -11.48 16 10 N -0.66 -12.41 5.29 -14.07 -0.07 -12.49 16 11 C 0.08 1.72 6.48 -83.44 -0.54 1.18 16 12 C -0.07 -1.31 8.78 -39.43 -0.35 -1.66 16 13 C -0.23 -4.30 10.02 -39.48 -0.40 -4.69 16 14 C 0.12 2.50 7.29 -39.43 -0.29 2.22 16 15 F -0.15 -2.98 17.26 2.25 0.04 -2.94 16 16 C -0.26 -5.67 9.11 -39.36 -0.36 -6.03 16 17 C 0.15 3.56 6.66 -38.94 -0.26 3.30 16 18 O -0.17 -4.48 9.18 0.01 0.00 -4.48 16 19 C -0.39 -10.35 9.44 30.88 0.29 -10.06 16 20 H 0.09 2.32 5.29 -52.49 -0.28 2.04 16 21 C 0.04 1.11 5.49 -17.52 -0.10 1.02 16 22 N -0.86 -23.51 13.67 55.48 0.76 -22.75 16 23 Si 0.94 19.77 29.55 -169.99 -5.02 14.75 16 24 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 25 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 26 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 27 H 0.06 0.44 7.68 -51.93 -0.40 0.04 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.41 6.43 -51.93 -0.33 0.08 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.69 6.58 -51.93 -0.34 0.35 16 33 H 0.07 0.60 6.43 -51.93 -0.33 0.26 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.38 2.25 9.04 45.56 0.41 2.66 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.40 4.93 7.00 -40.82 -0.29 4.65 16 39 H 0.41 7.51 8.38 -40.82 -0.34 7.17 16 40 H 0.16 3.04 5.52 -52.49 -0.29 2.75 16 41 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 42 H 0.14 3.14 5.71 -52.49 -0.30 2.84 16 43 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 360.43 15.07 5.43 5.43 Total: -1.00 -30.62 360.43 -6.45 -37.07 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: -4.59 Total: 16.24 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: -2.30 Total: -3.86 kcal Atomic # 7 Polarization: -45.70 SS G_CDS: 0.35 Total: -45.36 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.36 Total: -21.33 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.04 Total: -2.94 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.62 -6.45 -37.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135266580.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.731 kcal (2) G-P(sol) polarization free energy of solvation -30.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds