Wall clock time and date at job start Tue Mar 31 2020 14:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47265 * 2 1 4 4 C 1.53001 * 109.47319 * 59.99668 * 3 2 1 5 5 O 1.42906 * 109.46971 * 299.99527 * 3 2 1 6 6 C 1.52997 * 109.47265 * 180.02562 * 3 2 1 7 7 N 1.46501 * 109.47329 * 184.99611 * 6 3 2 8 8 C 1.34772 * 120.00031 * 179.97438 * 7 6 3 9 9 O 1.21595 * 120.00168 * 0.02562 * 8 7 6 10 10 N 1.34782 * 120.00069 * 180.02562 * 8 7 6 11 11 C 1.40132 * 120.00234 * 176.06943 * 10 8 7 12 12 C 1.38691 * 120.07629 * 25.48553 * 11 10 8 13 13 C 1.38197 * 120.02479 * 180.25427 * 12 11 10 14 14 C 1.38551 * 120.17254 * 0.05266 * 13 12 11 15 15 F 1.35096 * 119.92673 * 179.97438 * 14 13 12 16 16 C 1.38346 * 120.14911 * 359.95055 * 14 13 12 17 17 C 1.38736 * 119.97609 * 0.02628 * 16 14 13 18 18 O 1.35780 * 120.08513 * 180.02562 * 17 16 14 19 19 C 1.34811 * 116.99912 * 5.62509 * 18 17 16 20 20 H 1.07990 * 120.00163 * 5.36630 * 19 18 17 21 21 C 1.38637 * 119.99522 * 185.37054 * 19 18 17 22 22 N 1.31566 * 120.00692 * 359.97438 * 21 19 18 23 23 Si 1.86810 * 119.99560 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46726 * 90.00082 * 23 21 19 25 25 H 1.48501 * 109.46807 * 209.99969 * 23 21 19 26 26 H 1.48498 * 109.46794 * 330.00334 * 23 21 19 27 27 H 1.09001 * 109.47395 * 60.00388 * 1 2 3 28 28 H 1.09004 * 109.47424 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47173 * 300.00287 * 1 2 3 30 30 H 1.09003 * 109.47173 * 239.99712 * 2 1 3 31 31 H 1.09005 * 109.47135 * 120.00051 * 2 1 3 32 32 H 1.08994 * 109.46930 * 180.02562 * 4 3 2 33 33 H 1.09000 * 109.47014 * 300.00081 * 4 3 2 34 34 H 1.09005 * 109.46705 * 60.00179 * 4 3 2 35 35 H 0.96696 * 113.99665 * 300.00555 * 5 3 2 36 36 H 1.09000 * 109.47269 * 64.99428 * 6 3 2 37 37 H 1.08999 * 109.47236 * 304.99847 * 6 3 2 38 38 H 0.97000 * 119.99480 * 0.02562 * 7 6 3 39 39 H 0.96999 * 119.99441 * 356.06182 * 10 8 7 40 40 H 1.07997 * 119.99135 * 0.28287 * 12 11 10 41 41 H 1.08000 * 119.91876 * 180.02562 * 13 12 11 42 42 H 1.08002 * 120.01095 * 180.02562 * 16 14 13 43 43 H 0.96993 * 120.00504 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1638 1.2492 5 8 1.5637 2.1161 -1.1669 6 6 3.5700 1.4425 -0.0006 7 7 4.0584 2.8184 0.1196 8 6 5.3834 3.0637 0.1411 9 8 6.1736 2.1430 0.0601 10 7 5.8328 4.3295 0.2523 11 6 7.2079 4.5782 0.3575 12 6 8.1200 3.6710 -0.1608 13 6 9.4759 3.9148 -0.0517 14 6 9.9285 5.0641 0.5758 15 9 11.2551 5.2972 0.6801 16 6 9.0250 5.9739 1.0954 17 6 7.6624 5.7356 0.9889 18 8 6.7737 6.6272 1.4977 19 6 7.2748 7.7781 1.9894 20 1 8.3280 7.9949 1.8890 21 6 6.4381 8.6832 2.6239 22 7 5.1549 8.4193 2.7459 23 14 7.1326 10.2776 3.3059 24 1 7.0703 11.3314 2.2614 25 1 6.3345 10.7010 4.4845 26 1 8.5449 10.0678 3.7138 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.8930 3.1915 1.2489 33 1 0.4400 2.1638 1.2491 34 1 1.8933 1.6500 2.1392 35 1 1.8491 1.7125 -1.9980 36 1 3.9329 1.0082 -0.9322 37 1 3.9337 0.8529 0.8409 38 1 3.4281 3.5528 0.1846 39 1 5.2043 5.0683 0.2593 40 1 7.7705 2.7739 -0.6501 41 1 10.1846 3.2074 -0.4563 42 1 9.3803 6.8693 1.5837 43 1 4.5696 9.0523 3.1901 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135266580.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:22 Heat of formation + Delta-G solvation = -149.586119 kcal Electronic energy + Delta-G solvation = -27676.283238 eV Core-core repulsion = 23443.078658 eV Total energy + Delta-G solvation = -4233.204580 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.147 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.80722 -41.82292 -40.57678 -39.56696 -38.02605 -35.57607 -35.41000 -34.30061 -34.05847 -31.14120 -30.69550 -29.64697 -27.83581 -27.34335 -24.68194 -23.88933 -23.10059 -21.89865 -21.19633 -20.16235 -19.72976 -19.28747 -18.41221 -17.41263 -17.06358 -16.96487 -16.74490 -16.56380 -16.20842 -16.03901 -15.93197 -15.88004 -15.44181 -15.22666 -14.99528 -14.81184 -14.69602 -14.02454 -13.79970 -13.50784 -13.38142 -13.36418 -13.04406 -13.02362 -12.87956 -12.62739 -12.56106 -12.35167 -12.15122 -11.81350 -11.68010 -11.46176 -11.36954 -11.01387 -10.84615 -10.81358 -10.17315 -9.52847 -8.67945 -8.50555 -6.16299 0.23680 0.47772 1.37310 1.44164 1.52407 1.57956 2.02230 2.14503 2.71137 3.04574 3.09018 3.20697 3.37295 3.47204 3.60291 3.86032 3.90906 3.97255 4.17635 4.36895 4.38650 4.54448 4.57261 4.66002 4.69825 4.79684 4.94495 4.97698 5.01148 5.01859 5.09311 5.15736 5.23840 5.29798 5.32849 5.37592 5.48070 5.50977 5.56529 5.89917 5.94863 6.09642 6.83508 6.91532 6.94252 7.42880 7.63723 8.70066 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.011201 B = 0.003364 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2499.193105 B = 8321.835217 C =10589.769788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.142 4.142 3 C 0.130 3.870 4 C -0.148 4.148 5 O -0.565 6.565 6 C 0.114 3.886 7 N -0.724 5.724 8 C 0.702 3.298 9 O -0.609 6.609 10 N -0.665 5.665 11 C 0.083 3.917 12 C -0.067 4.067 13 C -0.201 4.201 14 C 0.116 3.884 15 F -0.146 7.146 16 C -0.261 4.261 17 C 0.126 3.874 18 O -0.204 6.204 19 C -0.415 4.415 20 H 0.098 0.902 21 C -0.009 4.009 22 N -0.905 5.905 23 Si 1.011 2.989 24 H -0.263 1.263 25 H -0.271 1.271 26 H -0.259 1.259 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.050 0.950 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.389 0.611 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.407 0.593 39 H 0.413 0.587 40 H 0.166 0.834 41 H 0.157 0.843 42 H 0.136 0.864 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.160 -13.508 -6.052 16.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.180 4.180 3 C 0.089 3.911 4 C -0.205 4.205 5 O -0.373 6.373 6 C -0.011 4.011 7 N -0.380 5.380 8 C 0.403 3.597 9 O -0.490 6.490 10 N -0.311 5.311 11 C -0.013 4.013 12 C -0.088 4.088 13 C -0.220 4.220 14 C 0.096 3.904 15 F -0.124 7.124 16 C -0.282 4.282 17 C 0.072 3.928 18 O -0.109 6.109 19 C -0.491 4.491 20 H 0.116 0.884 21 C -0.208 4.208 22 N -0.542 5.542 23 Si 0.831 3.169 24 H -0.188 1.188 25 H -0.196 1.196 26 H -0.183 1.183 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.239 0.761 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.244 0.756 39 H 0.249 0.751 40 H 0.183 0.817 41 H 0.175 0.825 42 H 0.153 0.847 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.216 -13.885 -5.555 16.605 hybrid contribution 0.302 1.368 0.208 1.417 sum -6.914 -12.517 -5.347 15.267 Atomic orbital electron populations 1.21719 0.94524 1.01952 1.02293 1.22092 0.97485 0.94379 1.04028 1.21394 0.89237 0.93391 0.87093 1.21866 1.02651 1.00419 0.95593 1.86560 1.76804 1.57658 1.16316 1.22078 0.94805 0.81346 1.02830 1.45006 1.03890 1.10754 1.78392 1.15995 0.83572 0.82246 0.77925 1.90758 1.55045 1.44026 1.59205 1.42254 1.05942 1.07667 1.75239 1.16989 0.83514 0.95831 1.04968 1.21257 0.90946 0.99096 0.97491 1.20925 0.96333 0.98012 1.06772 1.17475 0.76591 0.95773 1.00535 1.91421 1.31692 1.94793 1.94522 1.20899 0.92126 1.03715 1.11461 1.19070 0.89134 0.90687 0.93865 1.83902 1.32567 1.26250 1.68216 1.21723 0.96189 0.93184 1.37977 0.88421 1.26366 0.95501 1.02690 0.96284 1.70114 1.04663 1.37848 1.41582 0.84684 0.78491 0.75648 0.78089 1.18827 1.19562 1.18261 0.92509 0.91844 0.92667 0.90127 0.90190 0.93098 0.90626 0.90344 0.76091 0.90763 0.91154 0.75598 0.75099 0.81671 0.82527 0.84678 0.91652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.41 71.98 0.68 -1.03 16 2 C -0.14 -1.64 5.17 30.59 0.16 -1.49 16 3 C 0.13 2.03 0.75 -10.79 -0.01 2.03 16 4 C -0.15 -2.60 8.26 71.98 0.59 -2.01 16 5 O -0.57 -9.26 12.25 -148.98 -1.83 -11.09 16 6 C 0.11 2.28 4.81 86.38 0.42 2.70 16 7 N -0.72 -18.74 5.19 -478.53 -2.49 -21.23 16 8 C 0.70 24.04 8.45 179.05 1.51 25.56 16 9 O -0.61 -23.28 13.27 -4.02 -0.05 -23.33 16 10 N -0.67 -25.20 5.29 -316.70 -1.67 -26.87 16 11 C 0.08 3.51 6.48 38.22 0.25 3.76 16 12 C -0.07 -2.56 8.78 22.37 0.20 -2.36 16 13 C -0.20 -7.12 10.02 22.33 0.22 -6.89 16 14 C 0.12 4.57 7.29 22.37 0.16 4.73 16 15 F -0.15 -5.39 17.26 44.97 0.78 -4.62 16 16 C -0.26 -11.63 9.11 22.41 0.20 -11.43 16 17 C 0.13 5.99 6.66 22.68 0.15 6.15 16 18 O -0.20 -11.09 9.18 -22.87 -0.21 -11.30 16 19 C -0.41 -22.63 9.44 67.92 0.64 -21.98 16 20 H 0.10 5.02 5.29 -2.92 -0.02 5.00 16 21 C -0.01 -0.47 5.49 84.83 0.47 0.00 16 22 N -0.91 -51.02 13.67 21.61 0.30 -50.73 16 23 Si 1.01 40.89 29.55 68.60 2.03 42.92 16 24 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 25 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 26 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 27 H 0.06 0.72 7.68 -2.39 -0.02 0.70 16 28 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 29 H 0.05 0.68 6.43 -2.39 -0.02 0.67 16 30 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 32 H 0.05 1.05 6.58 -2.39 -0.02 1.03 16 33 H 0.07 1.23 6.43 -2.39 -0.02 1.22 16 34 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 35 H 0.39 3.94 9.04 -74.06 -0.67 3.27 16 36 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.41 9.93 7.00 -92.71 -0.65 9.28 16 39 H 0.41 15.52 8.38 -92.71 -0.78 14.75 16 40 H 0.17 6.10 5.52 -2.91 -0.02 6.08 16 41 H 0.16 4.49 8.06 -2.91 -0.02 4.46 16 42 H 0.14 6.11 5.71 -2.91 -0.02 6.09 16 43 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 Total: -1.00 -66.27 360.43 1.50 -64.78 By element: Atomic # 1 Polarization: 44.75 SS G_CDS: -1.00 Total: 43.76 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: 5.65 Total: -2.29 kcal Atomic # 7 Polarization: -94.96 SS G_CDS: -3.86 Total: -98.83 kcal Atomic # 8 Polarization: -43.64 SS G_CDS: -2.09 Total: -45.72 kcal Atomic # 9 Polarization: -5.39 SS G_CDS: 0.78 Total: -4.62 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.92 kcal Total: -66.27 1.50 -64.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135266580.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.809 kcal (2) G-P(sol) polarization free energy of solvation -66.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds