Wall clock time and date at job start Tue Mar 31 2020 14:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47191 * 2 1 4 4 C 1.52995 * 109.46826 * 179.97438 * 3 2 1 5 5 H 1.09006 * 109.47017 * 55.00404 * 4 3 2 6 6 O 1.42897 * 109.47777 * 295.00052 * 4 3 2 7 7 C 1.52998 * 109.46959 * 174.99893 * 4 3 2 8 8 N 1.46500 * 109.47475 * 185.00241 * 7 4 3 9 9 C 1.34773 * 120.00198 * 179.97438 * 8 7 4 10 10 O 1.21588 * 120.00247 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00097 * 179.97438 * 9 8 7 12 12 C 1.40136 * 120.00427 * 174.33019 * 11 9 8 13 13 C 1.38689 * 120.07293 * 335.24048 * 12 11 9 14 14 C 1.38203 * 120.02207 * 179.69694 * 13 12 11 15 15 C 1.38544 * 120.16946 * 0.59105 * 14 13 12 16 16 F 1.35106 * 119.92360 * 179.70025 * 15 14 13 17 17 C 1.38344 * 120.15484 * 359.68377 * 15 14 13 18 18 C 1.38741 * 119.97506 * 0.02562 * 17 15 14 19 19 O 1.35782 * 120.08457 * 180.02562 * 18 17 15 20 20 C 1.34800 * 117.00287 * 5.20104 * 19 18 17 21 21 H 1.07999 * 120.00018 * 354.97537 * 20 19 18 22 22 C 1.38627 * 120.00176 * 174.97980 * 20 19 18 23 23 N 1.31577 * 119.99982 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 119.99940 * 359.97438 * 22 20 19 25 25 H 1.48496 * 109.46974 * 90.00191 * 24 22 20 26 26 H 1.48501 * 109.47091 * 210.00347 * 24 22 20 27 27 H 1.48499 * 109.47450 * 329.99974 * 24 22 20 28 28 H 1.08994 * 109.47534 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47264 * 300.00315 * 1 2 3 30 30 H 1.09005 * 109.47207 * 59.99870 * 1 2 3 31 31 H 1.08997 * 109.46921 * 240.00305 * 2 1 3 32 32 H 1.08995 * 109.47175 * 120.00161 * 2 1 3 33 33 H 1.08997 * 109.46939 * 60.00316 * 3 2 1 34 34 H 1.08995 * 109.47192 * 300.00150 * 3 2 1 35 35 H 0.96700 * 113.99705 * 300.00388 * 6 4 3 36 36 H 1.09002 * 109.47498 * 305.00533 * 7 4 3 37 37 H 1.09001 * 109.47259 * 65.00099 * 7 4 3 38 38 H 0.97006 * 119.99929 * 0.02562 * 8 7 4 39 39 H 0.97006 * 119.99983 * 354.33071 * 11 9 8 40 40 H 1.07999 * 119.99313 * 359.96511 * 13 12 11 41 41 H 1.08001 * 119.91603 * 180.29123 * 14 13 12 42 42 H 1.07998 * 120.00839 * 180.02562 * 17 15 14 43 43 H 0.97003 * 119.99581 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9336 0.8529 -0.8410 6 8 4.0459 0.8732 1.2219 7 6 4.0801 2.8794 -0.1251 8 7 5.5402 2.8707 -0.2446 9 6 6.2132 4.0318 -0.3682 10 8 5.6086 5.0866 -0.3800 11 7 7.5565 4.0238 -0.4776 12 6 8.2465 5.2181 -0.7251 13 6 7.6036 6.2753 -1.3515 14 6 8.2833 7.4548 -1.5893 15 6 9.6111 7.5811 -1.2145 16 9 10.2725 8.7343 -1.4549 17 6 10.2612 6.5291 -0.5944 18 6 9.5830 5.3442 -0.3471 19 8 10.2187 4.3104 0.2619 20 6 11.4742 4.5355 0.6980 21 1 11.9593 5.4766 0.4849 22 6 12.1428 3.5590 1.4199 23 7 13.3681 3.7789 1.8460 24 14 11.3036 1.9315 1.7890 25 1 11.5897 0.9679 0.6960 26 1 11.8166 1.3901 3.0732 27 1 9.8372 2.1426 1.8915 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9564 -0.8899 35 1 3.7603 1.3478 2.0146 36 1 3.6458 3.3430 -1.0109 37 1 3.7914 3.4462 0.7600 38 1 6.0225 2.0291 -0.2356 39 1 8.0457 3.1912 -0.3851 40 1 6.5701 6.1783 -1.6496 41 1 7.7795 8.2787 -2.0730 42 1 11.2961 6.6302 -0.3028 43 1 13.8359 3.0954 2.3509 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135339377.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:39 Heat of formation + Delta-G solvation = -134.835904 kcal Electronic energy + Delta-G solvation = -27216.347621 eV Core-core repulsion = 22983.782658 eV Total energy + Delta-G solvation = -4232.564963 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.147 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.25442 -40.47186 -39.14646 -38.34278 -36.54090 -34.60653 -34.31843 -34.21017 -32.49374 -30.37145 -29.54740 -28.40806 -26.20943 -25.40053 -22.87207 -22.14605 -21.79020 -21.50941 -20.55735 -18.44869 -18.28019 -17.87839 -17.12354 -16.73035 -16.41579 -15.70016 -15.37599 -15.12024 -15.03585 -14.99405 -14.72265 -14.39241 -14.12089 -13.98144 -13.84982 -13.60846 -13.46429 -13.26197 -12.87799 -12.44356 -12.32902 -12.24746 -12.14642 -11.84818 -11.69874 -11.49121 -11.18542 -11.05758 -10.98311 -10.81019 -10.45729 -10.36251 -9.99459 -9.77654 -9.55428 -9.14368 -8.99478 -7.94961 -7.16770 -6.53130 -4.20405 1.77713 2.03053 2.69549 3.11863 3.14923 3.24890 3.29723 3.95398 4.09968 4.20650 4.28655 4.30883 4.52357 4.55191 4.59233 4.81940 4.84650 4.96083 5.01372 5.13684 5.18451 5.39927 5.41664 5.43957 5.51899 5.62023 5.69118 5.70448 5.86155 5.91385 5.93091 6.06878 6.33754 6.47348 6.62287 6.82833 6.89319 6.99166 7.12707 7.26796 7.47292 7.66263 7.88609 8.09177 8.67351 8.79942 9.34796 10.54064 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.011166 B = 0.003214 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.943648 B = 8708.911006 C =11100.443199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.149 4.149 4 C 0.094 3.906 5 H 0.105 0.895 6 O -0.557 6.557 7 C 0.109 3.891 8 N -0.742 5.742 9 C 0.703 3.297 10 O -0.582 6.582 11 N -0.666 5.666 12 C 0.085 3.915 13 C -0.064 4.064 14 C -0.217 4.217 15 C 0.123 3.877 16 F -0.150 7.150 17 C -0.243 4.243 18 C 0.160 3.840 19 O -0.211 6.211 20 C -0.390 4.390 21 H 0.109 0.891 22 C 0.065 3.935 23 N -0.873 5.873 24 Si 0.906 3.094 25 H -0.272 1.272 26 H -0.281 1.281 27 H -0.260 1.260 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.377 0.623 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.401 0.599 39 H 0.409 0.591 40 H 0.150 0.850 41 H 0.124 0.876 42 H 0.149 0.851 43 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.773 -6.574 -4.251 22.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.187 4.187 4 C 0.035 3.965 5 H 0.123 0.877 6 O -0.363 6.363 7 C -0.016 4.016 8 N -0.398 5.398 9 C 0.404 3.596 10 O -0.460 6.460 11 N -0.312 5.312 12 C -0.010 4.010 13 C -0.084 4.084 14 C -0.237 4.237 15 C 0.103 3.897 16 F -0.128 7.128 17 C -0.263 4.263 18 C 0.106 3.894 19 O -0.116 6.116 20 C -0.465 4.465 21 H 0.126 0.874 22 C -0.139 4.139 23 N -0.510 5.510 24 Si 0.731 3.269 25 H -0.197 1.197 26 H -0.206 1.206 27 H -0.184 1.184 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.225 0.775 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.235 0.765 39 H 0.245 0.755 40 H 0.168 0.832 41 H 0.142 0.858 42 H 0.167 0.833 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -20.926 -6.369 -4.494 22.331 hybrid contribution 0.326 -0.733 0.665 1.042 sum -20.601 -7.101 -3.829 22.124 Atomic orbital electron populations 1.21789 0.95867 1.01681 1.01779 1.21453 0.95608 0.96060 1.02712 1.22245 0.94884 0.98190 1.03384 1.22232 0.93237 0.92685 0.88391 0.87679 1.86602 1.77043 1.57043 1.15587 1.21913 0.79592 0.97208 1.02937 1.44961 1.07242 1.07707 1.79937 1.15854 0.81543 0.84182 0.78026 1.90859 1.67878 1.29467 1.57843 1.42245 1.04885 1.10205 1.73885 1.16707 0.89011 0.88460 1.06862 1.20798 1.00519 0.91014 0.96101 1.20559 0.93251 0.99801 1.10092 1.17464 0.90565 0.81860 0.99777 1.91425 1.81172 1.47661 1.92569 1.20950 1.02818 0.93319 1.09244 1.18393 0.89789 0.87640 0.93621 1.83487 1.29615 1.32745 1.65777 1.20748 0.86045 1.05257 1.34481 0.87379 1.24469 0.95168 0.99245 0.95008 1.69649 1.10617 1.35460 1.35248 0.86191 0.80569 0.82014 0.78131 1.19735 1.20648 1.18437 0.92723 0.92764 0.92784 0.91985 0.91243 0.91170 0.90591 0.77493 0.90676 0.91279 0.76471 0.75541 0.83245 0.85768 0.83337 0.90844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.91 37.16 0.37 -0.45 16 2 C -0.12 -0.71 5.83 -26.73 -0.16 -0.87 16 3 C -0.15 -0.84 4.89 -26.73 -0.13 -0.97 16 4 C 0.09 0.66 3.00 -26.73 -0.08 0.58 16 5 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 6 O -0.56 -4.53 12.82 -35.23 -0.45 -4.98 16 7 C 0.11 1.00 5.31 -4.04 -0.02 0.98 16 8 N -0.74 -8.69 5.51 -65.23 -0.36 -9.05 16 9 C 0.70 11.27 8.37 -86.92 -0.73 10.54 16 10 O -0.58 -10.87 13.51 5.29 0.07 -10.80 16 11 N -0.67 -11.44 5.30 -14.08 -0.07 -11.52 16 12 C 0.08 1.67 6.45 -83.44 -0.54 1.13 16 13 C -0.06 -1.18 8.71 -39.43 -0.34 -1.53 16 14 C -0.22 -3.93 10.02 -39.48 -0.40 -4.33 16 15 C 0.12 2.45 7.29 -39.43 -0.29 2.16 16 16 F -0.15 -2.89 17.26 2.25 0.04 -2.85 16 17 C -0.24 -5.28 9.14 -39.36 -0.36 -5.64 16 18 C 0.16 3.55 6.66 -38.94 -0.26 3.29 16 19 O -0.21 -5.13 8.00 0.04 0.00 -5.13 16 20 C -0.39 -10.45 9.94 30.88 0.31 -10.14 16 21 H 0.11 3.01 5.44 -52.49 -0.29 2.72 16 22 C 0.07 1.75 5.49 -17.52 -0.10 1.65 16 23 N -0.87 -24.36 13.96 55.48 0.77 -23.58 16 24 Si 0.91 20.25 28.62 -169.99 -4.86 15.39 16 25 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 26 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 27 H -0.26 -5.69 7.11 56.52 0.40 -5.28 16 28 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.46 7.82 -51.93 -0.41 0.05 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.38 2.12 9.05 45.56 0.41 2.53 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.40 4.09 8.49 -40.82 -0.35 3.75 16 39 H 0.41 6.53 8.36 -40.82 -0.34 6.19 16 40 H 0.15 2.71 5.79 -52.49 -0.30 2.40 16 41 H 0.12 1.93 8.06 -52.49 -0.42 1.51 16 42 H 0.15 3.38 5.63 -52.49 -0.30 3.09 16 43 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 367.56 15.07 5.54 5.54 Total: -1.00 -30.75 367.56 -6.98 -37.73 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -4.93 Total: 12.84 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: -2.72 Total: -3.59 kcal Atomic # 7 Polarization: -44.49 SS G_CDS: 0.34 Total: -44.15 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -0.38 Total: -20.90 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.04 Total: -2.85 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -4.86 Total: 15.39 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.75 -6.98 -37.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135339377.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.108 kcal (2) G-P(sol) polarization free energy of solvation -30.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds