Wall clock time and date at job start Tue Mar 31 2020 14:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47191 * 2 1 4 4 C 1.52995 * 109.46826 * 179.97438 * 3 2 1 5 5 H 1.09006 * 109.47017 * 55.00404 * 4 3 2 6 6 O 1.42897 * 109.47777 * 295.00052 * 4 3 2 7 7 C 1.52998 * 109.46959 * 174.99893 * 4 3 2 8 8 N 1.46500 * 109.47475 * 185.00241 * 7 4 3 9 9 C 1.34773 * 120.00198 * 179.97438 * 8 7 4 10 10 O 1.21588 * 120.00247 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00097 * 179.97438 * 9 8 7 12 12 C 1.40136 * 120.00427 * 174.33019 * 11 9 8 13 13 C 1.38689 * 120.07293 * 335.24048 * 12 11 9 14 14 C 1.38203 * 120.02207 * 179.69694 * 13 12 11 15 15 C 1.38544 * 120.16946 * 0.59105 * 14 13 12 16 16 F 1.35106 * 119.92360 * 179.70025 * 15 14 13 17 17 C 1.38344 * 120.15484 * 359.68377 * 15 14 13 18 18 C 1.38741 * 119.97506 * 0.02562 * 17 15 14 19 19 O 1.35782 * 120.08457 * 180.02562 * 18 17 15 20 20 C 1.34800 * 117.00287 * 5.20104 * 19 18 17 21 21 H 1.07999 * 120.00018 * 354.97537 * 20 19 18 22 22 C 1.38627 * 120.00176 * 174.97980 * 20 19 18 23 23 N 1.31577 * 119.99982 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 119.99940 * 359.97438 * 22 20 19 25 25 H 1.48496 * 109.46974 * 90.00191 * 24 22 20 26 26 H 1.48501 * 109.47091 * 210.00347 * 24 22 20 27 27 H 1.48499 * 109.47450 * 329.99974 * 24 22 20 28 28 H 1.08994 * 109.47534 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47264 * 300.00315 * 1 2 3 30 30 H 1.09005 * 109.47207 * 59.99870 * 1 2 3 31 31 H 1.08997 * 109.46921 * 240.00305 * 2 1 3 32 32 H 1.08995 * 109.47175 * 120.00161 * 2 1 3 33 33 H 1.08997 * 109.46939 * 60.00316 * 3 2 1 34 34 H 1.08995 * 109.47192 * 300.00150 * 3 2 1 35 35 H 0.96700 * 113.99705 * 300.00388 * 6 4 3 36 36 H 1.09002 * 109.47498 * 305.00533 * 7 4 3 37 37 H 1.09001 * 109.47259 * 65.00099 * 7 4 3 38 38 H 0.97006 * 119.99929 * 0.02562 * 8 7 4 39 39 H 0.97006 * 119.99983 * 354.33071 * 11 9 8 40 40 H 1.07999 * 119.99313 * 359.96511 * 13 12 11 41 41 H 1.08001 * 119.91603 * 180.29123 * 14 13 12 42 42 H 1.07998 * 120.00839 * 180.02562 * 17 15 14 43 43 H 0.97003 * 119.99581 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9336 0.8529 -0.8410 6 8 4.0459 0.8732 1.2219 7 6 4.0801 2.8794 -0.1251 8 7 5.5402 2.8707 -0.2446 9 6 6.2132 4.0318 -0.3682 10 8 5.6086 5.0866 -0.3800 11 7 7.5565 4.0238 -0.4776 12 6 8.2465 5.2181 -0.7251 13 6 7.6036 6.2753 -1.3515 14 6 8.2833 7.4548 -1.5893 15 6 9.6111 7.5811 -1.2145 16 9 10.2725 8.7343 -1.4549 17 6 10.2612 6.5291 -0.5944 18 6 9.5830 5.3442 -0.3471 19 8 10.2187 4.3104 0.2619 20 6 11.4742 4.5355 0.6980 21 1 11.9593 5.4766 0.4849 22 6 12.1428 3.5590 1.4199 23 7 13.3681 3.7789 1.8460 24 14 11.3036 1.9315 1.7890 25 1 11.5897 0.9679 0.6960 26 1 11.8166 1.3901 3.0732 27 1 9.8372 2.1426 1.8915 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9564 -0.8899 35 1 3.7603 1.3478 2.0146 36 1 3.6458 3.3430 -1.0109 37 1 3.7914 3.4462 0.7600 38 1 6.0225 2.0291 -0.2356 39 1 8.0457 3.1912 -0.3851 40 1 6.5701 6.1783 -1.6496 41 1 7.7795 8.2787 -2.0730 42 1 11.2961 6.6302 -0.3028 43 1 13.8359 3.0954 2.3509 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135339377.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:38 Heat of formation + Delta-G solvation = -156.965927 kcal Electronic energy + Delta-G solvation = -27217.307250 eV Core-core repulsion = 22983.782658 eV Total energy + Delta-G solvation = -4233.524593 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.147 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.83666 -41.86080 -40.59009 -39.16472 -38.13599 -35.64355 -35.45170 -34.97913 -34.46956 -31.33103 -31.04584 -29.75470 -27.38728 -26.87738 -24.23331 -23.33205 -22.83438 -22.32877 -21.70887 -20.15946 -19.80308 -19.36262 -18.46377 -17.44836 -17.38407 -17.12054 -16.92354 -16.61630 -16.27058 -16.09306 -15.86959 -15.73028 -15.43649 -15.31925 -15.11097 -14.86871 -14.74457 -14.26284 -14.12983 -13.93085 -13.63186 -13.56487 -13.11271 -12.73170 -12.64500 -12.63371 -12.41381 -12.18656 -12.17337 -11.69516 -11.65649 -11.49414 -11.43467 -11.14606 -10.93274 -10.85281 -10.18062 -9.60920 -8.75026 -8.51571 -6.25538 0.17410 0.40081 1.33655 1.38345 1.51063 1.53977 1.98687 2.26244 2.65422 2.75698 3.02643 3.09392 3.38775 3.50802 3.63909 3.89392 4.00552 4.08632 4.14170 4.27596 4.29300 4.33879 4.50835 4.65143 4.68406 4.75627 4.88066 4.96643 4.99347 5.07536 5.10226 5.17432 5.26075 5.29231 5.40035 5.44566 5.45934 5.50412 5.59594 5.81483 5.90024 6.09172 6.79039 6.80168 6.90101 7.37592 7.46950 8.59376 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.011166 B = 0.003214 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.943648 B = 8708.911006 C =11100.443199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.143 4.143 4 C 0.105 3.895 5 H 0.108 0.892 6 O -0.572 6.572 7 C 0.107 3.893 8 N -0.725 5.725 9 C 0.702 3.298 10 O -0.608 6.608 11 N -0.668 5.668 12 C 0.097 3.903 13 C -0.063 4.063 14 C -0.188 4.188 15 C 0.113 3.887 16 F -0.147 7.147 17 C -0.253 4.253 18 C 0.134 3.866 19 O -0.222 6.222 20 C -0.401 4.401 21 H 0.080 0.920 22 C 0.012 3.988 23 N -0.920 5.920 24 Si 0.972 3.028 25 H -0.260 1.260 26 H -0.275 1.275 27 H -0.252 1.252 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.387 0.613 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.410 0.590 39 H 0.415 0.585 40 H 0.164 0.836 41 H 0.161 0.839 42 H 0.127 0.873 43 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.890 -7.463 -4.979 25.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.181 4.181 4 C 0.046 3.954 5 H 0.126 0.874 6 O -0.379 6.379 7 C -0.017 4.017 8 N -0.381 5.381 9 C 0.403 3.597 10 O -0.488 6.488 11 N -0.314 5.314 12 C 0.001 3.999 13 C -0.083 4.083 14 C -0.208 4.208 15 C 0.092 3.908 16 F -0.125 7.125 17 C -0.274 4.274 18 C 0.082 3.918 19 O -0.129 6.129 20 C -0.477 4.477 21 H 0.097 0.903 22 C -0.187 4.187 23 N -0.560 5.560 24 Si 0.793 3.207 25 H -0.184 1.184 26 H -0.200 1.200 27 H -0.175 1.175 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.101 0.899 35 H 0.237 0.763 36 H 0.097 0.903 37 H 0.084 0.916 38 H 0.247 0.753 39 H 0.251 0.749 40 H 0.182 0.818 41 H 0.178 0.822 42 H 0.145 0.855 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -24.093 -7.274 -5.238 25.707 hybrid contribution 1.112 -0.280 0.777 1.385 sum -22.982 -7.553 -4.461 24.599 Atomic orbital electron populations 1.21786 0.95435 1.01853 1.02023 1.21427 0.95970 0.96059 1.02251 1.22197 0.93675 0.98179 1.04072 1.22164 0.93990 0.91043 0.88224 0.87380 1.86582 1.77415 1.57552 1.16357 1.22124 0.77817 0.98830 1.02960 1.44946 1.08230 1.06767 1.78141 1.15972 0.80961 0.84955 0.77829 1.90832 1.68158 1.30739 1.59115 1.42271 1.05511 1.09597 1.74064 1.16859 0.88116 0.89649 1.05326 1.21039 1.00987 0.90680 0.95644 1.20960 0.92031 1.00415 1.07371 1.17501 0.91338 0.81559 1.00359 1.91431 1.81300 1.47270 1.92548 1.20955 1.02190 0.94369 1.09854 1.18703 0.90961 0.87666 0.94516 1.83437 1.28495 1.33457 1.67515 1.20640 0.87267 1.04609 1.35142 0.90264 1.25326 0.95725 1.02923 0.94726 1.69746 1.12262 1.37029 1.36934 0.85200 0.79721 0.77437 0.78324 1.18449 1.20033 1.17547 0.92650 0.92615 0.92438 0.92094 0.92078 0.90574 0.89851 0.76309 0.90322 0.91577 0.75347 0.74870 0.81846 0.82174 0.85536 0.90463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.91 71.98 0.71 -0.63 16 2 C -0.12 -1.16 5.83 30.60 0.18 -0.98 16 3 C -0.14 -1.25 4.89 30.59 0.15 -1.10 16 4 C 0.11 1.20 3.00 30.59 0.09 1.29 16 5 H 0.11 1.20 8.14 -2.38 -0.02 1.18 16 6 O -0.57 -7.93 12.82 -148.98 -1.91 -9.84 16 7 C 0.11 1.69 5.31 86.38 0.46 2.15 16 8 N -0.73 -15.13 5.51 -478.54 -2.64 -17.77 16 9 C 0.70 20.89 8.37 179.06 1.50 22.38 16 10 O -0.61 -21.21 13.51 -3.99 -0.05 -21.26 16 11 N -0.67 -21.78 5.30 -316.71 -1.68 -23.46 16 12 C 0.10 3.70 6.45 38.22 0.25 3.94 16 13 C -0.06 -2.18 8.71 22.37 0.19 -1.99 16 14 C -0.19 -6.29 10.02 22.33 0.22 -6.06 16 15 C 0.11 4.37 7.29 22.37 0.16 4.53 16 16 F -0.15 -5.54 17.26 44.97 0.78 -4.77 16 17 C -0.25 -11.30 9.14 22.42 0.20 -11.10 16 18 C 0.13 5.99 6.66 22.68 0.15 6.14 16 19 O -0.22 -10.99 8.00 -22.79 -0.18 -11.17 16 20 C -0.40 -22.37 9.94 67.91 0.68 -21.70 16 21 H 0.08 4.74 5.44 -2.91 -0.02 4.73 16 22 C 0.01 0.67 5.49 84.82 0.47 1.13 16 23 N -0.92 -53.26 13.96 21.61 0.30 -52.95 16 24 Si 0.97 41.87 28.62 68.60 1.96 43.83 16 25 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 26 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 27 H -0.25 -10.34 7.11 99.48 0.71 -9.64 16 28 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 31 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.06 0.70 7.82 -2.39 -0.02 0.69 16 33 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.39 3.47 9.05 -74.06 -0.67 2.80 16 36 H 0.08 1.24 8.14 -2.39 -0.02 1.23 16 37 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.41 7.27 8.49 -92.70 -0.79 6.48 16 39 H 0.42 12.55 8.36 -92.70 -0.78 11.78 16 40 H 0.16 5.38 5.79 -2.91 -0.02 5.36 16 41 H 0.16 4.25 8.06 -2.91 -0.02 4.23 16 42 H 0.13 6.19 5.63 -2.91 -0.02 6.17 16 43 H 0.29 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -67.20 367.56 0.85 -66.35 By element: Atomic # 1 Polarization: 34.16 SS G_CDS: -1.15 Total: 33.01 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: 5.42 Total: -1.98 kcal Atomic # 7 Polarization: -90.17 SS G_CDS: -4.01 Total: -94.18 kcal Atomic # 8 Polarization: -40.13 SS G_CDS: -2.15 Total: -42.27 kcal Atomic # 9 Polarization: -5.54 SS G_CDS: 0.78 Total: -4.77 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 1.96 Total: 43.83 kcal Total: -67.20 0.85 -66.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135339377.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.612 kcal (2) G-P(sol) polarization free energy of solvation -67.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds