Wall clock time and date at job start Tue Mar 31 2020 15:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47378 * 2 1 4 4 H 1.09002 * 109.46924 * 304.99942 * 3 2 1 5 5 O 1.42897 * 109.47386 * 64.99836 * 3 2 1 6 6 C 1.52998 * 109.47301 * 185.00596 * 3 2 1 7 7 C 1.52997 * 109.47345 * 174.99961 * 6 3 2 8 8 N 1.46501 * 109.47329 * 179.97438 * 7 6 3 9 9 C 1.34772 * 120.00031 * 179.97438 * 8 7 6 10 10 O 1.21595 * 120.00168 * 0.02562 * 9 8 7 11 11 N 1.34782 * 120.00069 * 180.02562 * 9 8 7 12 12 C 1.40132 * 120.00234 * 176.06943 * 11 9 8 13 13 C 1.38691 * 120.07629 * 25.48553 * 12 11 9 14 14 C 1.38197 * 120.02479 * 180.25427 * 13 12 11 15 15 C 1.38551 * 120.17254 * 0.05266 * 14 13 12 16 16 F 1.35096 * 119.92673 * 179.97438 * 15 14 13 17 17 C 1.38346 * 120.14911 * 359.95055 * 15 14 13 18 18 C 1.38736 * 119.97609 * 0.02628 * 17 15 14 19 19 O 1.35780 * 120.08513 * 180.02562 * 18 17 15 20 20 C 1.34811 * 116.99912 * 5.62509 * 19 18 17 21 21 H 1.07990 * 120.00163 * 5.36630 * 20 19 18 22 22 C 1.38637 * 119.99522 * 185.37054 * 20 19 18 23 23 N 1.31566 * 120.00692 * 359.97438 * 22 20 19 24 24 Si 1.86810 * 119.99560 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46726 * 90.00082 * 24 22 20 26 26 H 1.48501 * 109.46807 * 209.99969 * 24 22 20 27 27 H 1.48498 * 109.46794 * 330.00334 * 24 22 20 28 28 H 1.09003 * 109.47317 * 59.99634 * 1 2 3 29 29 H 1.08997 * 109.47663 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46912 * 300.00380 * 1 2 3 31 31 H 1.08999 * 109.46961 * 240.00147 * 2 1 3 32 32 H 1.08993 * 109.46935 * 119.99971 * 2 1 3 33 33 H 0.96695 * 113.99652 * 60.00316 * 5 3 2 34 34 H 1.09000 * 109.47515 * 54.99403 * 6 3 2 35 35 H 1.09005 * 109.46516 * 294.99650 * 6 3 2 36 36 H 1.09000 * 109.47269 * 59.99291 * 7 6 3 37 37 H 1.08999 * 109.47236 * 299.99711 * 7 6 3 38 38 H 0.97000 * 119.99480 * 0.02562 * 8 7 6 39 39 H 0.96999 * 119.99441 * 356.06182 * 11 9 8 40 40 H 1.07997 * 119.99135 * 0.28287 * 13 12 11 41 41 H 1.08000 * 119.91876 * 180.02562 * 14 13 12 42 42 H 1.08002 * 120.01095 * 180.02562 * 17 15 14 43 43 H 0.96993 * 120.00504 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 8 1.6620 2.0814 1.2210 6 6 3.5648 1.4443 -0.1259 7 6 4.0646 2.8849 -0.2513 8 7 5.5247 2.8866 -0.3712 9 6 6.1892 4.0526 -0.4946 10 8 5.5771 5.1031 -0.5059 11 7 7.5325 4.0542 -0.6054 12 6 8.2167 5.2588 -0.8163 13 6 7.6569 6.4580 -0.4016 14 6 8.3302 7.6458 -0.6148 15 6 9.5648 7.6433 -1.2437 16 9 10.2185 8.8074 -1.4500 17 6 10.1299 6.4512 -1.6603 18 6 9.4595 5.2551 -1.4490 19 8 10.0124 4.0838 -1.8565 20 6 11.2641 4.1382 -2.3540 21 1 11.8130 5.0681 -2.3345 22 6 11.8467 3.0005 -2.8908 23 7 11.1782 1.8675 -2.9142 24 14 13.5810 3.0761 -3.5808 25 1 14.5559 2.7659 -2.5044 26 1 13.7213 2.0839 -4.6768 27 1 13.8443 4.4385 -4.1097 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 2.0142 1.6543 2.0138 34 1 3.8571 0.8799 -1.0114 35 1 4.0030 0.9835 0.7595 36 1 3.7723 3.4492 0.6343 37 1 3.6264 3.3457 -1.1366 38 1 6.0129 2.0485 -0.3625 39 1 8.0255 3.2215 -0.5391 40 1 6.6945 6.4635 0.0885 41 1 7.8928 8.5786 -0.2908 42 1 11.0926 6.4518 -2.1499 43 1 11.5857 1.0716 -3.2901 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152185226.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:58 Heat of formation + Delta-G solvation = -136.229474 kcal Electronic energy + Delta-G solvation = -26968.696337 eV Core-core repulsion = 22736.070945 eV Total energy + Delta-G solvation = -4232.625393 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.147 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.20287 -40.28358 -38.91804 -38.38740 -36.42556 -34.92749 -34.04474 -33.17115 -32.39895 -30.98097 -29.33543 -28.17635 -25.83487 -25.45005 -22.80591 -22.08399 -21.77781 -21.49608 -20.48285 -18.36818 -18.22066 -17.58906 -16.79195 -16.69937 -16.25132 -15.49492 -15.48902 -15.22691 -15.08969 -14.92504 -14.40107 -14.29316 -14.22368 -13.92123 -13.62557 -13.49079 -13.25384 -13.14689 -12.82186 -12.36448 -12.28422 -12.15848 -11.83458 -11.68724 -11.54350 -11.34840 -11.31763 -11.06914 -10.95162 -10.73051 -10.54539 -10.27044 -9.82889 -9.78623 -9.38706 -8.97478 -8.95372 -7.83137 -7.02180 -6.60191 -4.17655 1.90130 2.16265 2.87471 3.06075 3.07872 3.12227 3.46460 3.85098 4.01967 4.29844 4.40695 4.45469 4.61367 4.74027 4.85488 4.88394 4.94019 4.98265 5.15119 5.16172 5.32285 5.42859 5.47048 5.60081 5.62478 5.71461 5.78605 5.90298 5.91571 5.94557 6.07139 6.23347 6.50205 6.70045 6.71102 6.94530 7.00708 7.10172 7.16680 7.31941 7.34258 7.71311 7.84480 8.27456 8.83765 8.86989 9.48085 10.57187 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.011900 B = 0.002766 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.392317 B =10121.853824 C =12343.450668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.156 4.156 3 C 0.110 3.890 4 H 0.102 0.898 5 O -0.558 6.558 6 C -0.166 4.166 7 C 0.144 3.856 8 N -0.748 5.748 9 C 0.703 3.297 10 O -0.584 6.584 11 N -0.663 5.663 12 C 0.081 3.919 13 C -0.066 4.066 14 C -0.225 4.225 15 C 0.123 3.877 16 F -0.153 7.153 17 C -0.256 4.256 18 C 0.153 3.847 19 O -0.172 6.172 20 C -0.391 4.391 21 H 0.094 0.906 22 C 0.043 3.957 23 N -0.862 5.862 24 Si 0.942 3.058 25 H -0.272 1.272 26 H -0.277 1.277 27 H -0.266 1.266 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.374 0.626 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.397 0.603 39 H 0.412 0.588 40 H 0.157 0.843 41 H 0.122 0.878 42 H 0.142 0.858 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.793 -4.870 6.275 15.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.194 4.194 3 C 0.050 3.950 4 H 0.120 0.880 5 O -0.364 6.364 6 C -0.204 4.204 7 C 0.019 3.981 8 N -0.404 5.404 9 C 0.404 3.596 10 O -0.463 6.463 11 N -0.308 5.308 12 C -0.014 4.014 13 C -0.087 4.087 14 C -0.245 4.245 15 C 0.103 3.897 16 F -0.131 7.131 17 C -0.277 4.277 18 C 0.097 3.903 19 O -0.075 6.075 20 C -0.467 4.467 21 H 0.111 0.889 22 C -0.162 4.162 23 N -0.496 5.496 24 Si 0.766 3.234 25 H -0.198 1.198 26 H -0.202 1.202 27 H -0.191 1.191 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.221 0.779 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.231 0.769 39 H 0.248 0.752 40 H 0.175 0.825 41 H 0.140 0.860 42 H 0.160 0.840 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.719 -4.010 5.743 16.300 hybrid contribution 1.948 -1.040 -0.221 2.220 sum -12.770 -5.051 5.522 14.801 Atomic orbital electron populations 1.21708 0.95075 1.01442 1.02492 1.22238 0.97191 0.97059 1.02890 1.21898 0.92165 0.92879 0.88056 0.88008 1.86618 1.76898 1.57243 1.15602 1.22556 0.96999 0.97209 1.03640 1.21079 0.78349 0.96028 1.02600 1.45103 1.07660 1.07480 1.80174 1.15876 0.81472 0.84174 0.78077 1.90805 1.67519 1.29816 1.58117 1.42218 1.04740 1.09850 1.74031 1.16737 0.92464 0.85813 1.06384 1.21084 1.00361 0.89254 0.97963 1.20546 0.95678 0.98899 1.09372 1.17486 0.91664 0.80580 1.00001 1.91404 1.81168 1.47245 1.93318 1.20823 1.04408 0.90440 1.12006 1.18731 0.91476 0.86870 0.93217 1.83921 1.30346 1.24395 1.68867 1.21331 0.87121 0.98262 1.39971 0.88879 1.25266 1.00199 0.94307 0.96438 1.70001 1.37426 1.00058 1.42150 0.85693 0.80191 0.78785 0.78733 1.19773 1.20206 1.19066 0.92665 0.92894 0.92049 0.90915 0.91598 0.77935 0.90125 0.90830 0.90956 0.91709 0.76900 0.75181 0.82534 0.85985 0.84004 0.91906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.81 37.16 0.36 -0.56 16 2 C -0.16 -0.91 5.61 -26.73 -0.15 -1.06 16 3 C 0.11 0.78 2.96 -26.73 -0.08 0.70 16 4 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 5 O -0.56 -4.54 12.41 -35.23 -0.44 -4.98 16 6 C -0.17 -1.22 5.01 -26.73 -0.13 -1.35 16 7 C 0.14 1.59 5.57 -4.04 -0.02 1.57 16 8 N -0.75 -9.66 5.56 -65.22 -0.36 -10.02 16 9 C 0.70 12.27 8.45 -86.92 -0.73 11.54 16 10 O -0.58 -11.76 13.27 5.28 0.07 -11.69 16 11 N -0.66 -12.32 5.29 -14.07 -0.07 -12.39 16 12 C 0.08 1.72 6.48 -83.44 -0.54 1.18 16 13 C -0.07 -1.32 8.78 -39.43 -0.35 -1.66 16 14 C -0.22 -4.30 10.02 -39.48 -0.40 -4.69 16 15 C 0.12 2.50 7.29 -39.43 -0.29 2.22 16 16 F -0.15 -2.98 17.26 2.25 0.04 -2.94 16 17 C -0.26 -5.66 9.11 -39.36 -0.36 -6.02 16 18 C 0.15 3.55 6.66 -38.94 -0.26 3.29 16 19 O -0.17 -4.48 9.18 0.01 0.00 -4.48 16 20 C -0.39 -10.29 9.44 30.88 0.29 -10.00 16 21 H 0.09 2.31 5.29 -52.49 -0.28 2.04 16 22 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 23 N -0.86 -23.38 13.67 55.48 0.76 -22.63 16 24 Si 0.94 19.67 29.55 -169.99 -5.02 14.64 16 25 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 26 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 27 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.41 7.82 -51.93 -0.41 0.01 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.37 1.81 9.04 45.56 0.41 2.23 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.88 7.82 -51.93 -0.41 0.47 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.40 4.24 8.49 -40.82 -0.35 3.89 16 39 H 0.41 7.30 8.38 -40.82 -0.34 6.95 16 40 H 0.16 3.09 5.52 -52.49 -0.29 2.80 16 41 H 0.12 2.03 8.06 -52.49 -0.42 1.60 16 42 H 0.14 3.14 5.71 -52.49 -0.30 2.84 16 43 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 367.80 15.07 5.54 5.54 Total: -1.00 -31.24 367.80 -7.13 -38.37 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: -4.90 Total: 14.43 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -2.75 Total: -3.86 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: 0.32 Total: -45.04 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -0.37 Total: -21.15 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.04 Total: -2.94 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.64 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.24 -7.13 -38.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152185226.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.856 kcal (2) G-P(sol) polarization free energy of solvation -31.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds