Wall clock time and date at job start Tue Mar 31 2020 15:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47378 * 2 1 4 4 H 1.09002 * 109.46924 * 304.99942 * 3 2 1 5 5 O 1.42897 * 109.47386 * 64.99836 * 3 2 1 6 6 C 1.52998 * 109.47301 * 185.00596 * 3 2 1 7 7 C 1.52997 * 109.47345 * 174.99961 * 6 3 2 8 8 N 1.46501 * 109.47329 * 179.97438 * 7 6 3 9 9 C 1.34772 * 120.00031 * 179.97438 * 8 7 6 10 10 O 1.21595 * 120.00168 * 0.02562 * 9 8 7 11 11 N 1.34782 * 120.00069 * 180.02562 * 9 8 7 12 12 C 1.40132 * 120.00234 * 176.06943 * 11 9 8 13 13 C 1.38691 * 120.07629 * 25.48553 * 12 11 9 14 14 C 1.38197 * 120.02479 * 180.25427 * 13 12 11 15 15 C 1.38551 * 120.17254 * 0.05266 * 14 13 12 16 16 F 1.35096 * 119.92673 * 179.97438 * 15 14 13 17 17 C 1.38346 * 120.14911 * 359.95055 * 15 14 13 18 18 C 1.38736 * 119.97609 * 0.02628 * 17 15 14 19 19 O 1.35780 * 120.08513 * 180.02562 * 18 17 15 20 20 C 1.34811 * 116.99912 * 5.62509 * 19 18 17 21 21 H 1.07990 * 120.00163 * 5.36630 * 20 19 18 22 22 C 1.38637 * 119.99522 * 185.37054 * 20 19 18 23 23 N 1.31566 * 120.00692 * 359.97438 * 22 20 19 24 24 Si 1.86810 * 119.99560 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46726 * 90.00082 * 24 22 20 26 26 H 1.48501 * 109.46807 * 209.99969 * 24 22 20 27 27 H 1.48498 * 109.46794 * 330.00334 * 24 22 20 28 28 H 1.09003 * 109.47317 * 59.99634 * 1 2 3 29 29 H 1.08997 * 109.47663 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46912 * 300.00380 * 1 2 3 31 31 H 1.08999 * 109.46961 * 240.00147 * 2 1 3 32 32 H 1.08993 * 109.46935 * 119.99971 * 2 1 3 33 33 H 0.96695 * 113.99652 * 60.00316 * 5 3 2 34 34 H 1.09000 * 109.47515 * 54.99403 * 6 3 2 35 35 H 1.09005 * 109.46516 * 294.99650 * 6 3 2 36 36 H 1.09000 * 109.47269 * 59.99291 * 7 6 3 37 37 H 1.08999 * 109.47236 * 299.99711 * 7 6 3 38 38 H 0.97000 * 119.99480 * 0.02562 * 8 7 6 39 39 H 0.96999 * 119.99441 * 356.06182 * 11 9 8 40 40 H 1.07997 * 119.99135 * 0.28287 * 13 12 11 41 41 H 1.08000 * 119.91876 * 180.02562 * 14 13 12 42 42 H 1.08002 * 120.01095 * 180.02562 * 17 15 14 43 43 H 0.96993 * 120.00504 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 8 1.6620 2.0814 1.2210 6 6 3.5648 1.4443 -0.1259 7 6 4.0646 2.8849 -0.2513 8 7 5.5247 2.8866 -0.3712 9 6 6.1892 4.0526 -0.4946 10 8 5.5771 5.1031 -0.5059 11 7 7.5325 4.0542 -0.6054 12 6 8.2167 5.2588 -0.8163 13 6 7.6569 6.4580 -0.4016 14 6 8.3302 7.6458 -0.6148 15 6 9.5648 7.6433 -1.2437 16 9 10.2185 8.8074 -1.4500 17 6 10.1299 6.4512 -1.6603 18 6 9.4595 5.2551 -1.4490 19 8 10.0124 4.0838 -1.8565 20 6 11.2641 4.1382 -2.3540 21 1 11.8130 5.0681 -2.3345 22 6 11.8467 3.0005 -2.8908 23 7 11.1782 1.8675 -2.9142 24 14 13.5810 3.0761 -3.5808 25 1 14.5559 2.7659 -2.5044 26 1 13.7213 2.0839 -4.6768 27 1 13.8443 4.4385 -4.1097 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 2.0142 1.6543 2.0138 34 1 3.8571 0.8799 -1.0114 35 1 4.0030 0.9835 0.7595 36 1 3.7723 3.4492 0.6343 37 1 3.6264 3.3457 -1.1366 38 1 6.0129 2.0485 -0.3625 39 1 8.0255 3.2215 -0.5391 40 1 6.6945 6.4635 0.0885 41 1 7.8928 8.5786 -0.2908 42 1 11.0926 6.4518 -2.1499 43 1 11.5857 1.0716 -3.2901 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152185226.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:58 Heat of formation + Delta-G solvation = -158.580416 kcal Electronic energy + Delta-G solvation = -26969.665547 eV Core-core repulsion = 22736.070945 eV Total energy + Delta-G solvation = -4233.594602 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.147 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.80889 -41.78382 -40.44212 -39.15487 -38.08155 -36.06801 -35.58326 -34.29859 -33.72530 -31.90231 -31.00418 -29.68793 -27.40016 -26.60331 -24.21338 -23.41723 -22.75995 -22.39574 -21.82651 -20.15586 -19.72603 -19.16346 -18.33607 -17.36121 -17.14856 -16.96322 -16.73547 -16.60739 -16.49763 -16.37988 -15.95862 -15.53563 -15.40504 -15.29511 -15.08970 -14.99544 -14.62152 -14.04559 -13.96937 -13.75947 -13.47158 -13.43771 -13.06040 -12.87873 -12.59765 -12.49848 -12.36260 -12.20851 -12.15121 -11.80096 -11.68347 -11.63134 -11.37514 -11.02470 -10.81865 -10.74968 -10.15878 -9.52996 -8.68064 -8.50658 -6.16057 0.23471 0.47491 1.37763 1.44371 1.52558 1.58268 2.02691 2.14642 2.71084 3.04699 3.11409 3.21009 3.46971 3.52090 3.77373 3.95375 3.99558 4.12205 4.17727 4.29259 4.30911 4.38733 4.56336 4.62064 4.68004 4.78108 4.94244 4.97791 5.01954 5.06189 5.09521 5.14916 5.23812 5.30839 5.33572 5.37625 5.43617 5.51328 5.56523 5.92226 5.95974 6.09583 6.91863 6.93671 6.94485 7.44176 7.63562 8.70023 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.011900 B = 0.002766 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.392317 B =10121.853824 C =12343.450668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.150 4.150 3 C 0.112 3.888 4 H 0.091 0.909 5 O -0.577 6.577 6 C -0.153 4.153 7 C 0.143 3.857 8 N -0.730 5.730 9 C 0.700 3.300 10 O -0.611 6.611 11 N -0.664 5.664 12 C 0.083 3.917 13 C -0.068 4.068 14 C -0.201 4.201 15 C 0.117 3.883 16 F -0.146 7.146 17 C -0.261 4.261 18 C 0.127 3.873 19 O -0.203 6.203 20 C -0.415 4.415 21 H 0.098 0.902 22 C -0.008 4.008 23 N -0.905 5.905 24 Si 1.010 2.990 25 H -0.263 1.263 26 H -0.271 1.271 27 H -0.260 1.260 28 H 0.049 0.951 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.387 0.613 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.062 0.938 37 H 0.051 0.949 38 H 0.410 0.590 39 H 0.415 0.585 40 H 0.164 0.836 41 H 0.156 0.844 42 H 0.136 0.864 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.098 -4.885 6.777 16.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.188 4.188 3 C 0.053 3.947 4 H 0.109 0.891 5 O -0.384 6.384 6 C -0.191 4.191 7 C 0.020 3.980 8 N -0.385 5.385 9 C 0.401 3.599 10 O -0.492 6.492 11 N -0.310 5.310 12 C -0.013 4.013 13 C -0.089 4.089 14 C -0.221 4.221 15 C 0.096 3.904 16 F -0.124 7.124 17 C -0.282 4.282 18 C 0.073 3.927 19 O -0.108 6.108 20 C -0.491 4.491 21 H 0.115 0.885 22 C -0.208 4.208 23 N -0.542 5.542 24 Si 0.830 3.170 25 H -0.188 1.188 26 H -0.196 1.196 27 H -0.184 1.184 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.237 0.763 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.247 0.753 39 H 0.251 0.749 40 H 0.181 0.819 41 H 0.174 0.826 42 H 0.154 0.846 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.058 -4.040 6.276 16.807 hybrid contribution 1.846 -0.894 -0.267 2.068 sum -13.212 -4.934 6.010 15.330 Atomic orbital electron populations 1.21712 0.95442 1.01761 1.01901 1.22187 0.96799 0.96068 1.03762 1.21858 0.91731 0.93589 0.87551 0.89092 1.86588 1.77289 1.58056 1.16510 1.22485 0.97131 0.94578 1.04909 1.21203 0.76835 0.98540 1.01458 1.45062 1.08419 1.06681 1.78378 1.16043 0.80968 0.85023 0.77908 1.90770 1.67823 1.31178 1.59447 1.42234 1.05284 1.09299 1.74160 1.16977 0.91935 0.87200 1.05232 1.21252 1.00576 0.89083 0.97982 1.20921 0.94492 0.99972 1.06722 1.17471 0.92191 0.80264 1.00426 1.91421 1.81126 1.46586 1.93291 1.20903 1.04289 0.91025 1.11951 1.19048 0.92612 0.86770 0.94232 1.83897 1.30606 1.25662 1.70658 1.21721 0.87820 0.98890 1.40638 0.88453 1.26348 1.04270 0.93711 0.96448 1.70105 1.39439 1.00828 1.43799 0.84691 0.75029 0.79047 0.78198 1.18789 1.19560 1.18355 0.93162 0.92113 0.92769 0.90294 0.90428 0.76350 0.89210 0.89089 0.91918 0.93102 0.75339 0.74877 0.81859 0.82629 0.84616 0.91623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.81 71.98 0.71 -0.97 16 2 C -0.15 -1.46 5.61 30.59 0.17 -1.29 16 3 C 0.11 1.44 2.96 30.59 0.09 1.53 16 4 H 0.09 1.35 8.14 -2.39 -0.02 1.34 16 5 O -0.58 -8.68 12.41 -148.98 -1.85 -10.52 16 6 C -0.15 -1.95 5.01 30.59 0.15 -1.80 16 7 C 0.14 3.03 5.57 86.38 0.48 3.51 16 8 N -0.73 -18.15 5.56 -478.53 -2.66 -20.81 16 9 C 0.70 24.12 8.45 179.05 1.51 25.63 16 10 O -0.61 -24.31 13.27 -4.02 -0.05 -24.36 16 11 N -0.66 -24.75 5.29 -316.70 -1.67 -26.42 16 12 C 0.08 3.49 6.48 38.22 0.25 3.74 16 13 C -0.07 -2.64 8.78 22.37 0.20 -2.44 16 14 C -0.20 -7.24 10.02 22.33 0.22 -7.01 16 15 C 0.12 4.60 7.29 22.37 0.16 4.76 16 16 F -0.15 -5.42 17.26 44.97 0.78 -4.64 16 17 C -0.26 -11.59 9.11 22.41 0.20 -11.39 16 18 C 0.13 6.00 6.66 22.68 0.15 6.16 16 19 O -0.20 -10.90 9.18 -22.87 -0.21 -11.11 16 20 C -0.41 -22.40 9.44 67.92 0.64 -21.76 16 21 H 0.10 4.96 5.29 -2.92 -0.02 4.94 16 22 C -0.01 -0.43 5.49 84.83 0.47 0.04 16 23 N -0.90 -50.21 13.67 21.61 0.30 -49.91 16 24 Si 1.01 40.41 29.55 68.60 2.03 42.44 16 25 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 26 H -0.27 -10.44 7.11 99.48 0.71 -9.74 16 27 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 28 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.05 0.68 7.82 -2.39 -0.02 0.66 16 31 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.39 3.12 9.04 -74.06 -0.67 2.45 16 34 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 36 H 0.06 1.48 7.82 -2.39 -0.02 1.46 16 37 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.41 8.20 8.49 -92.71 -0.79 7.41 16 39 H 0.42 14.93 8.38 -92.71 -0.78 14.15 16 40 H 0.16 6.20 5.52 -2.91 -0.02 6.19 16 41 H 0.16 4.56 8.06 -2.91 -0.02 4.54 16 42 H 0.14 6.11 5.71 -2.91 -0.02 6.09 16 43 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 Total: -1.00 -67.87 367.80 0.91 -66.96 By element: Atomic # 1 Polarization: 40.82 SS G_CDS: -1.15 Total: 39.67 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: 5.41 Total: -1.29 kcal Atomic # 7 Polarization: -93.10 SS G_CDS: -4.04 Total: -97.14 kcal Atomic # 8 Polarization: -43.88 SS G_CDS: -2.11 Total: -46.00 kcal Atomic # 9 Polarization: -5.42 SS G_CDS: 0.78 Total: -4.64 kcal Atomic # 14 Polarization: 40.41 SS G_CDS: 2.03 Total: 42.44 kcal Total: -67.87 0.91 -66.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152185226.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.620 kcal (2) G-P(sol) polarization free energy of solvation -67.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds