Wall clock time and date at job start Tue Mar 31 2020 15:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47319 * 2 1 4 4 H 1.09008 * 109.46706 * 55.00102 * 3 2 1 5 5 N 1.46498 * 109.47270 * 295.00277 * 3 2 1 6 6 C 1.34780 * 119.99715 * 84.99664 * 5 3 2 7 7 O 1.21584 * 120.00344 * 0.02562 * 6 5 3 8 8 C 1.47542 * 119.99606 * 179.97438 * 6 5 3 9 9 C 1.39663 * 120.19563 * 0.02562 * 8 6 5 10 10 C 1.37837 * 119.91781 * 179.97438 * 9 8 6 11 11 C 1.38574 * 120.32013 * 359.97438 * 10 9 8 12 12 C 1.38026 * 120.40352 * 359.97438 * 11 10 9 13 13 C 1.38829 * 120.07249 * 0.02562 * 12 11 10 14 14 O 1.35522 * 120.15989 * 179.97438 * 13 12 11 15 15 C 1.34812 * 117.00136 * 354.39845 * 14 13 12 16 16 H 1.07998 * 119.99529 * 5.06496 * 15 14 13 17 17 C 1.38692 * 120.00205 * 185.06446 * 15 14 13 18 18 N 1.31514 * 120.00382 * 179.97438 * 17 15 14 19 19 Si 1.86810 * 119.99786 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.46951 * 90.00022 * 19 17 15 21 21 H 1.48500 * 109.46957 * 209.99559 * 19 17 15 22 22 H 1.48493 * 109.47297 * 329.99896 * 19 17 15 23 23 C 1.50700 * 109.47057 * 175.00018 * 3 2 1 24 24 C 1.38651 * 120.78623 * 79.72565 * 23 3 2 25 25 C 1.38207 * 119.15598 * 179.75412 * 24 23 3 26 26 N 1.31862 * 120.76797 * 0.53088 * 25 24 23 27 27 C 1.31872 * 121.72379 * 359.73725 * 26 25 24 28 28 C 1.38198 * 120.76810 * 359.97438 * 27 26 25 29 29 H 1.08998 * 109.47293 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46707 * 299.99935 * 1 2 3 31 31 H 1.09002 * 109.46939 * 59.99495 * 1 2 3 32 32 H 1.09000 * 109.46707 * 240.00065 * 2 1 3 33 33 H 1.09002 * 109.46939 * 120.00505 * 2 1 3 34 34 H 0.96993 * 120.00322 * 264.99994 * 5 3 2 35 35 H 1.07996 * 120.04374 * 359.95841 * 9 8 6 36 36 H 1.07993 * 119.83980 * 180.02562 * 10 9 8 37 37 H 1.08002 * 119.79409 * 180.02562 * 11 10 9 38 38 H 1.07998 * 119.96330 * 179.74221 * 12 11 10 39 39 H 0.97002 * 120.00488 * 179.97438 * 18 17 15 40 40 H 1.07998 * 120.42108 * 359.97438 * 24 23 3 41 41 H 1.07999 * 119.61468 * 180.24243 * 25 24 23 42 42 H 1.08003 * 119.61843 * 180.02562 * 27 26 25 43 43 H 1.07997 * 120.42651 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 7 1.6525 2.0975 -1.2517 6 6 0.4351 2.6644 -1.3668 7 8 -0.3412 2.6326 -0.4316 8 6 0.0450 3.3246 -2.6273 9 6 0.9338 3.3640 -3.7039 10 6 0.5632 3.9818 -4.8790 11 6 -0.6884 4.5645 -4.9985 12 6 -1.5775 4.5324 -3.9433 13 6 -1.2215 3.9146 -2.7522 14 8 -2.0929 3.8824 -1.7147 15 6 -3.2443 4.5683 -1.8611 16 1 -3.4743 5.0421 -2.8039 17 6 -4.1333 4.6652 -0.8010 18 7 -5.2562 5.3347 -0.9436 19 14 -3.7348 3.8460 0.8300 20 1 -2.9887 4.7973 1.6924 21 1 -4.9963 3.4498 1.5060 22 1 -2.9029 2.6401 0.5880 23 6 3.5419 1.4442 0.1238 24 6 4.3453 1.1986 -0.9793 25 6 5.7190 1.2134 -0.8285 26 7 6.2660 1.4469 0.3484 27 6 5.5331 1.6791 1.4199 28 6 4.1532 1.6860 1.3446 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.2719 2.1232 -1.9977 35 1 1.9102 2.9112 -3.6158 36 1 1.2512 4.0112 -5.7109 37 1 -0.9701 5.0460 -5.9233 38 1 -2.5496 4.9925 -4.0428 39 1 -5.8782 5.4022 -0.2022 40 1 3.9032 1.0018 -1.9448 41 1 6.3518 1.0270 -1.6836 42 1 6.0169 1.8668 2.3671 43 1 3.5584 1.8772 2.2255 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158468487.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:49 Heat of formation + Delta-G solvation = 1.823336 kcal Electronic energy + Delta-G solvation = -27397.787239 eV Core-core repulsion = 23601.917491 eV Total energy + Delta-G solvation = -3795.869749 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.71844 -39.79284 -38.55285 -36.60765 -35.90478 -32.58956 -32.47865 -32.09805 -31.44249 -30.31538 -29.24237 -26.75781 -25.31261 -23.87476 -23.29921 -22.79248 -21.58591 -20.75408 -20.07290 -18.21355 -17.94372 -16.98096 -16.75349 -16.08218 -15.87145 -15.49836 -15.23124 -14.75851 -14.40245 -14.22397 -14.11776 -13.91217 -13.85211 -13.79324 -13.53722 -13.11374 -12.74164 -12.55750 -12.39477 -12.20803 -11.84439 -11.56653 -11.45923 -11.34718 -11.25136 -10.87793 -10.77594 -10.74800 -10.08174 -9.88502 -9.74769 -9.64828 -9.41671 -9.09090 -8.92755 -8.77880 -8.43136 -7.52313 -6.50439 -4.15704 0.87268 0.95455 1.52453 2.14528 3.28329 3.34669 3.36474 3.49777 3.61003 3.62210 4.20060 4.24757 4.31540 4.47044 4.55284 4.68897 4.80380 4.89444 5.04222 5.07620 5.08935 5.22812 5.31377 5.35729 5.44518 5.48876 5.58950 5.65764 5.74416 5.83709 5.89711 5.99342 6.06728 6.09289 6.27903 6.33138 6.42724 6.50186 6.64995 6.72559 6.78556 6.96416 7.10741 7.43676 7.63469 7.70931 7.85137 7.91352 8.78668 8.85320 9.47405 10.54657 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.013249 B = 0.003990 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.785464 B = 7015.828912 C = 8451.440410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.124 4.124 3 C 0.185 3.815 4 H 0.101 0.899 5 N -0.735 5.735 6 C 0.563 3.437 7 O -0.510 6.510 8 C -0.228 4.228 9 C -0.041 4.041 10 C -0.221 4.221 11 C -0.050 4.050 12 C -0.227 4.227 13 C 0.202 3.798 14 O -0.164 6.164 15 C -0.397 4.397 16 H 0.108 0.892 17 C 0.072 3.928 18 N -0.869 5.869 19 Si 0.900 3.100 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.237 1.237 23 C -0.039 4.039 24 C -0.168 4.168 25 C 0.101 3.899 26 N -0.489 5.489 27 C 0.101 3.899 28 C -0.162 4.162 29 H 0.045 0.955 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.393 0.607 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.138 0.862 39 H 0.282 0.718 40 H 0.134 0.866 41 H 0.156 0.844 42 H 0.156 0.844 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.104 -8.557 -0.938 20.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.163 4.163 3 C 0.080 3.920 4 H 0.119 0.881 5 N -0.391 5.391 6 C 0.354 3.646 7 O -0.385 6.385 8 C -0.232 4.232 9 C -0.060 4.060 10 C -0.240 4.240 11 C -0.069 4.069 12 C -0.246 4.246 13 C 0.144 3.856 14 O -0.064 6.064 15 C -0.472 4.472 16 H 0.125 0.875 17 C -0.134 4.134 18 N -0.505 5.505 19 Si 0.725 3.275 20 H -0.200 1.200 21 H -0.213 1.213 22 H -0.160 1.160 23 C -0.048 4.048 24 C -0.188 4.188 25 C -0.056 4.056 26 N -0.198 5.198 27 C -0.056 4.056 28 C -0.182 4.182 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.229 0.771 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.156 0.844 39 H 0.092 0.908 40 H 0.152 0.848 41 H 0.173 0.827 42 H 0.174 0.826 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 18.172 -8.604 0.191 20.107 hybrid contribution -0.663 -0.077 0.021 0.668 sum 17.509 -8.681 0.212 19.544 Atomic orbital electron populations 1.21829 0.93839 1.00628 1.04135 1.21923 0.97698 0.94693 1.01944 1.19825 0.88186 0.94495 0.89467 0.88147 1.45980 1.17561 1.60080 1.15500 1.18133 0.80752 0.77731 0.87995 1.90866 1.50294 1.57673 1.39667 1.18824 0.94993 1.13706 0.95710 1.20746 0.96747 0.96249 0.92249 1.20539 0.97983 1.07195 0.98256 1.20972 0.93077 0.95497 0.97343 1.21295 1.02324 1.07330 0.93632 1.19001 0.87867 0.91162 0.87571 1.83770 1.26433 1.60886 1.35334 1.20921 0.93309 1.30972 1.01956 0.87474 1.24493 0.94004 0.95495 0.99368 1.69634 1.08943 1.38194 1.33699 0.86198 0.77763 0.82331 0.81203 1.20007 1.21312 1.15971 1.20480 0.95873 0.94720 0.93711 1.21970 0.95064 1.02179 0.99592 1.22749 0.92600 0.94956 0.95260 1.67680 1.41123 1.11592 0.99424 1.22763 0.90650 0.94945 0.97240 1.22067 0.96381 1.01488 0.98304 0.93628 0.91940 0.91553 0.91851 0.91481 0.77106 0.87040 0.87004 0.86819 0.84415 0.90803 0.84822 0.82659 0.82632 0.84458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 8.51 37.16 0.32 -1.89 16 2 C -0.12 -1.46 5.59 -26.73 -0.15 -1.61 16 3 C 0.19 2.30 2.49 -69.08 -0.17 2.13 16 4 H 0.10 1.44 7.48 -51.92 -0.39 1.05 16 5 N -0.74 -10.13 4.94 -55.97 -0.28 -10.40 16 6 C 0.56 10.61 6.33 -12.47 -0.08 10.53 16 7 O -0.51 -11.59 12.30 -16.56 -0.20 -11.79 16 8 C -0.23 -4.41 5.89 -104.81 -0.62 -5.03 16 9 C -0.04 -0.63 9.54 -39.20 -0.37 -1.00 16 10 C -0.22 -3.31 10.03 -39.60 -0.40 -3.70 16 11 C -0.05 -0.84 10.03 -39.54 -0.40 -1.23 16 12 C -0.23 -4.67 9.16 -39.44 -0.36 -5.03 16 13 C 0.20 4.61 6.66 -38.60 -0.26 4.36 16 14 O -0.16 -4.38 6.67 -21.06 -0.14 -4.52 16 15 C -0.40 -11.12 9.95 30.90 0.31 -10.82 16 16 H 0.11 3.00 5.44 -52.49 -0.29 2.72 16 17 C 0.07 2.04 5.49 -17.52 -0.10 1.94 16 18 N -0.87 -24.98 13.96 55.48 0.77 -24.21 16 19 Si 0.90 22.70 28.62 -169.99 -4.86 17.83 16 20 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 22 H -0.24 -6.20 7.11 56.52 0.40 -5.80 16 23 C -0.04 -0.41 4.98 -104.32 -0.52 -0.93 16 24 C -0.17 -1.52 9.15 -39.44 -0.36 -1.88 16 25 C 0.10 0.92 11.18 -17.55 -0.20 0.73 16 26 N -0.49 -5.23 10.36 -13.25 -0.14 -5.37 16 27 C 0.10 0.95 11.18 -17.55 -0.20 0.75 16 28 C -0.16 -1.56 9.78 -39.44 -0.39 -1.95 16 29 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 1.04 7.84 -51.93 -0.41 0.63 16 31 H 0.07 1.18 5.64 -51.93 -0.29 0.89 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.39 4.36 5.00 -40.82 -0.20 4.16 16 35 H 0.11 1.27 6.40 -52.49 -0.34 0.93 16 36 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 37 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 38 H 0.14 2.96 5.64 -52.49 -0.30 2.66 16 39 H 0.28 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.13 0.96 7.03 -52.49 -0.37 0.59 16 41 H 0.16 1.00 8.06 -52.49 -0.42 0.58 16 42 H 0.16 1.06 8.06 -52.48 -0.42 0.64 16 43 H 0.14 1.12 8.06 -52.49 -0.42 0.69 16 LS Contribution 357.60 15.07 5.39 5.39 Total: -1.00 -32.59 357.60 -8.49 -41.08 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -5.10 Total: 6.63 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -3.93 Total: -14.64 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: 0.36 Total: -39.98 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: -0.34 Total: -16.31 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -4.86 Total: 17.83 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.59 -8.49 -41.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158468487.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.903 kcal (2) G-P(sol) polarization free energy of solvation -32.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds