Wall clock time and date at job start Tue Mar 31 2020 15:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47319 * 2 1 4 4 H 1.09008 * 109.46706 * 55.00102 * 3 2 1 5 5 N 1.46498 * 109.47270 * 295.00277 * 3 2 1 6 6 C 1.34780 * 119.99715 * 84.99664 * 5 3 2 7 7 O 1.21584 * 120.00344 * 0.02562 * 6 5 3 8 8 C 1.47542 * 119.99606 * 179.97438 * 6 5 3 9 9 C 1.39663 * 120.19563 * 0.02562 * 8 6 5 10 10 C 1.37837 * 119.91781 * 179.97438 * 9 8 6 11 11 C 1.38574 * 120.32013 * 359.97438 * 10 9 8 12 12 C 1.38026 * 120.40352 * 359.97438 * 11 10 9 13 13 C 1.38829 * 120.07249 * 0.02562 * 12 11 10 14 14 O 1.35522 * 120.15989 * 179.97438 * 13 12 11 15 15 C 1.34812 * 117.00136 * 354.39845 * 14 13 12 16 16 H 1.07998 * 119.99529 * 5.06496 * 15 14 13 17 17 C 1.38692 * 120.00205 * 185.06446 * 15 14 13 18 18 N 1.31514 * 120.00382 * 179.97438 * 17 15 14 19 19 Si 1.86810 * 119.99786 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.46951 * 90.00022 * 19 17 15 21 21 H 1.48500 * 109.46957 * 209.99559 * 19 17 15 22 22 H 1.48493 * 109.47297 * 329.99896 * 19 17 15 23 23 C 1.50700 * 109.47057 * 175.00018 * 3 2 1 24 24 C 1.38651 * 120.78623 * 79.72565 * 23 3 2 25 25 C 1.38207 * 119.15598 * 179.75412 * 24 23 3 26 26 N 1.31862 * 120.76797 * 0.53088 * 25 24 23 27 27 C 1.31872 * 121.72379 * 359.73725 * 26 25 24 28 28 C 1.38198 * 120.76810 * 359.97438 * 27 26 25 29 29 H 1.08998 * 109.47293 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46707 * 299.99935 * 1 2 3 31 31 H 1.09002 * 109.46939 * 59.99495 * 1 2 3 32 32 H 1.09000 * 109.46707 * 240.00065 * 2 1 3 33 33 H 1.09002 * 109.46939 * 120.00505 * 2 1 3 34 34 H 0.96993 * 120.00322 * 264.99994 * 5 3 2 35 35 H 1.07996 * 120.04374 * 359.95841 * 9 8 6 36 36 H 1.07993 * 119.83980 * 180.02562 * 10 9 8 37 37 H 1.08002 * 119.79409 * 180.02562 * 11 10 9 38 38 H 1.07998 * 119.96330 * 179.74221 * 12 11 10 39 39 H 0.97002 * 120.00488 * 179.97438 * 18 17 15 40 40 H 1.07998 * 120.42108 * 359.97438 * 24 23 3 41 41 H 1.07999 * 119.61468 * 180.24243 * 25 24 23 42 42 H 1.08003 * 119.61843 * 180.02562 * 27 26 25 43 43 H 1.07997 * 120.42651 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 7 1.6525 2.0975 -1.2517 6 6 0.4351 2.6644 -1.3668 7 8 -0.3412 2.6326 -0.4316 8 6 0.0450 3.3246 -2.6273 9 6 0.9338 3.3640 -3.7039 10 6 0.5632 3.9818 -4.8790 11 6 -0.6884 4.5645 -4.9985 12 6 -1.5775 4.5324 -3.9433 13 6 -1.2215 3.9146 -2.7522 14 8 -2.0929 3.8824 -1.7147 15 6 -3.2443 4.5683 -1.8611 16 1 -3.4743 5.0421 -2.8039 17 6 -4.1333 4.6652 -0.8010 18 7 -5.2562 5.3347 -0.9436 19 14 -3.7348 3.8460 0.8300 20 1 -2.9887 4.7973 1.6924 21 1 -4.9963 3.4498 1.5060 22 1 -2.9029 2.6401 0.5880 23 6 3.5419 1.4442 0.1238 24 6 4.3453 1.1986 -0.9793 25 6 5.7190 1.2134 -0.8285 26 7 6.2660 1.4469 0.3484 27 6 5.5331 1.6791 1.4199 28 6 4.1532 1.6860 1.3446 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.2719 2.1232 -1.9977 35 1 1.9102 2.9112 -3.6158 36 1 1.2512 4.0112 -5.7109 37 1 -0.9701 5.0460 -5.9233 38 1 -2.5496 4.9925 -4.0428 39 1 -5.8782 5.4022 -0.2022 40 1 3.9032 1.0018 -1.9448 41 1 6.3518 1.0270 -1.6836 42 1 6.0169 1.8668 2.3671 43 1 3.5584 1.8772 2.2255 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158468487.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:48 Heat of formation + Delta-G solvation = -18.654660 kcal Electronic energy + Delta-G solvation = -27398.675232 eV Core-core repulsion = 23601.917491 eV Total energy + Delta-G solvation = -3796.757741 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.73963 -41.07131 -39.99130 -38.18220 -37.10918 -34.52342 -33.84068 -33.00356 -32.15097 -31.68187 -30.78823 -27.88503 -27.18600 -24.88162 -24.39780 -23.67140 -23.09609 -21.96651 -21.38465 -19.81117 -19.58679 -18.27755 -17.86674 -17.14740 -16.81817 -16.57603 -16.46170 -16.28102 -15.83737 -15.67312 -15.63500 -15.45466 -14.84624 -14.72542 -14.51679 -14.41482 -14.27149 -14.08358 -14.00582 -13.68018 -13.11989 -12.83976 -12.70331 -12.59651 -12.54116 -12.41422 -12.32568 -12.00431 -11.88042 -11.51167 -10.97210 -10.78729 -10.55659 -10.48689 -10.08780 -10.04427 -9.82883 -9.14290 -8.57834 -6.26633 0.06245 0.20042 0.20725 0.65417 1.24910 1.29895 1.58112 2.05400 2.17884 2.28976 2.76469 2.87150 3.02342 3.17515 3.34937 3.62174 3.83387 3.87982 4.01743 4.02497 4.14845 4.18428 4.23076 4.25429 4.38796 4.48038 4.56636 4.64386 4.69101 4.81085 4.83857 4.90050 4.95107 4.99348 5.06893 5.09525 5.27076 5.29521 5.42711 5.47997 5.56690 5.62393 5.69868 5.75938 5.83651 6.15832 6.61563 6.79347 7.03172 7.41332 7.58930 8.52679 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.013249 B = 0.003990 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.785464 B = 7015.828912 C = 8451.440410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.115 4.115 3 C 0.188 3.812 4 H 0.074 0.926 5 N -0.711 5.711 6 C 0.559 3.441 7 O -0.556 6.556 8 C -0.233 4.233 9 C -0.032 4.032 10 C -0.189 4.189 11 C -0.044 4.044 12 C -0.252 4.252 13 C 0.163 3.837 14 O -0.206 6.206 15 C -0.402 4.402 16 H 0.090 0.910 17 C 0.026 3.974 18 N -0.913 5.913 19 Si 0.956 3.044 20 H -0.278 1.278 21 H -0.269 1.269 22 H -0.260 1.260 23 C -0.049 4.049 24 C -0.164 4.164 25 C 0.098 3.902 26 N -0.511 5.511 27 C 0.095 3.905 28 C -0.169 4.169 29 H 0.059 0.941 30 H 0.034 0.966 31 H 0.034 0.966 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.410 0.590 35 H 0.165 0.835 36 H 0.166 0.834 37 H 0.149 0.851 38 H 0.113 0.887 39 H 0.285 0.715 40 H 0.158 0.842 41 H 0.183 0.817 42 H 0.176 0.824 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.885 -10.051 -3.151 25.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.153 4.153 3 C 0.083 3.917 4 H 0.093 0.907 5 N -0.367 5.367 6 C 0.349 3.651 7 O -0.434 6.434 8 C -0.237 4.237 9 C -0.050 4.050 10 C -0.207 4.207 11 C -0.062 4.062 12 C -0.271 4.271 13 C 0.110 3.890 14 O -0.111 6.111 15 C -0.478 4.478 16 H 0.108 0.892 17 C -0.174 4.174 18 N -0.553 5.553 19 Si 0.780 3.220 20 H -0.204 1.204 21 H -0.194 1.194 22 H -0.184 1.184 23 C -0.058 4.058 24 C -0.184 4.184 25 C -0.059 4.059 26 N -0.220 5.220 27 C -0.061 4.061 28 C -0.189 4.189 29 H 0.078 0.922 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.249 0.751 35 H 0.182 0.818 36 H 0.184 0.816 37 H 0.167 0.833 38 H 0.131 0.869 39 H 0.095 0.905 40 H 0.175 0.825 41 H 0.200 0.800 42 H 0.193 0.807 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 23.036 -10.116 -2.069 25.244 hybrid contribution -1.707 0.312 0.391 1.779 sum 21.328 -9.804 -1.679 23.534 Atomic orbital electron populations 1.21751 0.96517 1.00580 1.01256 1.21866 0.94973 0.94608 1.03853 1.19784 0.89818 0.94308 0.87755 0.90741 1.45720 1.15939 1.58436 1.16616 1.18221 0.81753 0.77775 0.87337 1.90862 1.52060 1.59386 1.41114 1.19298 0.94334 1.12623 0.97464 1.21346 0.97825 0.95117 0.90710 1.21228 0.97289 1.03065 0.99161 1.21435 0.93010 0.94618 0.97125 1.21334 1.02683 1.08433 0.94695 1.19740 0.89028 0.92555 0.87709 1.83760 1.26741 1.63272 1.37277 1.20874 0.94440 1.31128 1.01342 0.89249 1.25042 0.94261 0.96530 1.01614 1.69684 1.10079 1.40957 1.34603 0.85394 0.77498 0.80380 0.78695 1.20385 1.19406 1.18411 1.20298 0.94240 0.96415 0.94839 1.22182 0.94984 1.01258 0.99938 1.23227 0.93029 0.94018 0.95581 1.67726 1.41878 1.12176 1.00260 1.23094 0.90534 0.94505 0.97957 1.22218 0.96772 1.01401 0.98542 0.92159 0.94645 0.94683 0.89786 0.89573 0.75111 0.81802 0.81637 0.83330 0.86890 0.90513 0.82472 0.79965 0.80689 0.83798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.36 8.51 71.98 0.61 -3.75 16 2 C -0.11 -2.48 5.59 30.59 0.17 -2.31 16 3 C 0.19 4.37 2.49 44.25 0.11 4.48 16 4 H 0.07 2.17 7.48 -2.38 -0.02 2.15 16 5 N -0.71 -17.91 4.94 -449.26 -2.22 -20.13 16 6 C 0.56 20.91 6.33 86.70 0.55 21.46 16 7 O -0.56 -26.48 12.30 16.91 0.21 -26.27 16 8 C -0.23 -8.75 5.89 -19.99 -0.12 -8.87 16 9 C -0.03 -0.81 9.54 22.52 0.21 -0.59 16 10 C -0.19 -4.49 10.03 22.25 0.22 -4.26 16 11 C -0.04 -1.31 10.03 22.30 0.22 -1.08 16 12 C -0.25 -10.58 9.16 22.36 0.20 -10.37 16 13 C 0.16 7.69 6.66 22.91 0.15 7.84 16 14 O -0.21 -11.77 6.67 0.83 0.01 -11.77 16 15 C -0.40 -24.33 9.95 67.93 0.68 -23.66 16 16 H 0.09 5.51 5.44 -2.91 -0.02 5.49 16 17 C 0.03 1.55 5.49 84.85 0.47 2.01 16 18 N -0.91 -55.86 13.96 21.62 0.30 -55.56 16 19 Si 0.96 50.37 28.62 68.60 1.96 52.34 16 20 H -0.28 -14.51 7.11 99.48 0.71 -13.80 16 21 H -0.27 -13.07 7.11 99.48 0.71 -12.37 16 22 H -0.26 -14.50 7.11 99.48 0.71 -13.80 16 23 C -0.05 -0.88 4.98 -19.67 -0.10 -0.98 16 24 C -0.16 -2.25 9.15 22.36 0.20 -2.04 16 25 C 0.10 1.38 11.18 84.68 0.95 2.33 16 26 N -0.51 -9.35 10.36 -195.85 -2.03 -11.38 16 27 C 0.10 1.56 11.18 84.68 0.95 2.51 16 28 C -0.17 -2.90 9.78 22.36 0.22 -2.69 16 29 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.03 1.24 7.84 -2.39 -0.02 1.22 16 31 H 0.03 1.27 5.64 -2.39 -0.01 1.26 16 32 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.09 1.58 8.14 -2.39 -0.02 1.57 16 34 H 0.41 7.16 5.00 -92.71 -0.46 6.70 16 35 H 0.16 2.47 6.40 -2.91 -0.02 2.46 16 36 H 0.17 2.40 8.06 -2.91 -0.02 2.38 16 37 H 0.15 3.42 8.06 -2.91 -0.02 3.39 16 38 H 0.11 5.24 5.64 -2.91 -0.02 5.22 16 39 H 0.29 16.09 8.31 -92.71 -0.77 15.32 16 40 H 0.16 1.32 7.03 -2.91 -0.02 1.30 16 41 H 0.18 1.45 8.06 -2.91 -0.02 1.42 16 42 H 0.18 1.98 8.06 -2.91 -0.02 1.96 16 43 H 0.14 2.18 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -80.21 357.60 4.53 -75.68 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: 0.59 Total: 17.07 kcal Atomic # 6 Polarization: -25.68 SS G_CDS: 5.71 Total: -19.98 kcal Atomic # 7 Polarization: -83.13 SS G_CDS: -3.95 Total: -87.07 kcal Atomic # 8 Polarization: -38.25 SS G_CDS: 0.21 Total: -38.04 kcal Atomic # 14 Polarization: 50.37 SS G_CDS: 1.96 Total: 52.34 kcal Total: -80.21 4.53 -75.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158468487.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.027 kcal (2) G-P(sol) polarization free energy of solvation -80.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds