Wall clock time and date at job start Tue Mar 31 2020 15:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.47330 * 2 1 4 4 N 1.46505 * 109.47439 * 240.00137 * 2 1 3 5 5 C 1.34375 * 125.73167 * 84.71333 * 4 2 1 6 6 C 1.38379 * 107.34831 * 179.90594 * 5 4 2 7 7 C 1.46866 * 126.45640 * 180.13945 * 6 5 4 8 8 C 1.35291 * 120.00284 * 180.23882 * 7 6 5 9 9 C 1.41641 * 120.00301 * 179.97438 * 8 7 6 10 10 O 1.21824 * 119.99534 * 359.97438 * 9 8 7 11 11 C 1.47710 * 120.00371 * 179.97438 * 9 8 7 12 12 C 1.39771 * 120.07321 * 359.72731 * 11 9 8 13 13 C 1.37660 * 119.92146 * 179.74210 * 12 11 9 14 14 C 1.39140 * 120.07542 * 0.53129 * 13 12 11 15 15 O 1.35570 * 119.92574 * 179.70170 * 14 13 12 16 16 C 1.34783 * 117.00075 * 174.47217 * 15 14 13 17 17 H 1.07996 * 120.00587 * 5.05187 * 16 15 14 18 18 C 1.38740 * 119.99894 * 185.05521 * 16 15 14 19 19 N 1.31496 * 119.99810 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00085 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47263 * 89.99757 * 20 18 16 22 22 H 1.48495 * 109.46949 * 210.00206 * 20 18 16 23 23 H 1.48511 * 109.46977 * 329.99868 * 20 18 16 24 24 C 1.39148 * 120.15235 * 359.71997 * 14 13 12 25 25 C 1.37651 * 120.07430 * 0.02562 * 24 14 13 26 26 C 1.41486 * 107.09297 * 0.35700 * 6 5 4 27 27 N 1.30422 * 108.02999 * 359.77938 * 26 6 5 28 28 H 1.09005 * 109.47395 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47056 * 60.00373 * 1 2 3 30 30 H 1.08998 * 109.47280 * 299.99733 * 1 2 3 31 31 H 1.09002 * 109.47513 * 119.99903 * 2 1 3 32 32 H 1.09006 * 109.46567 * 59.99645 * 3 2 1 33 33 H 1.09002 * 109.47024 * 179.97438 * 3 2 1 34 34 H 1.08992 * 109.46929 * 300.00376 * 3 2 1 35 35 H 1.07998 * 126.32345 * 0.04298 * 5 4 2 36 36 H 1.08001 * 119.99711 * 0.23360 * 7 6 5 37 37 H 1.08001 * 120.00005 * 359.97438 * 8 7 6 38 38 H 1.08003 * 120.04328 * 359.97438 * 12 11 9 39 39 H 1.08002 * 119.96076 * 180.22821 * 13 12 11 40 40 H 0.97008 * 120.00099 * 180.02562 * 19 18 16 41 41 H 1.08000 * 119.96194 * 179.97438 * 24 14 13 42 42 H 1.08004 * 120.03620 * 179.97438 * 25 24 14 43 43 H 1.07994 * 125.98217 * 179.73896 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1852 -0.1366 -2.4090 6 6 2.6629 -1.1247 -3.2518 7 6 2.9932 -0.9734 -4.6748 8 6 3.4490 -2.0342 -5.3800 9 6 3.7670 -1.8885 -6.7526 10 8 3.6296 -0.8079 -7.2981 11 6 4.2652 -3.0465 -7.5224 12 6 4.4288 -4.2855 -6.8965 13 6 4.8883 -5.3640 -7.6182 14 6 5.2002 -5.2190 -8.9664 15 8 5.6581 -6.2816 -9.6727 16 6 5.8330 -6.1063 -10.9976 17 1 5.6888 -5.1303 -11.4369 18 6 6.1980 -7.1798 -11.7972 19 7 6.3739 -8.3681 -11.2623 20 14 6.4396 -6.9370 -13.6335 21 1 7.8543 -6.5749 -13.9031 22 1 6.1061 -8.1957 -14.3473 23 1 5.5503 -5.8472 -14.1100 24 6 5.0434 -3.9856 -9.5913 25 6 4.5795 -2.9044 -8.8769 26 6 2.7685 -2.3095 -2.4857 27 7 2.3836 -2.0392 -1.2692 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.9856 0.8907 -2.6760 36 1 2.8721 -0.0153 -5.1584 37 1 3.5704 -2.9922 -4.8964 38 1 4.1915 -4.3977 -5.8489 39 1 5.0114 -6.3226 -7.1361 40 1 6.6296 -9.1186 -11.8213 41 1 5.2868 -3.8764 -10.6379 42 1 4.4585 -1.9473 -9.3625 43 1 3.1077 -3.2696 -2.8454 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171981535.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:17 Heat of formation + Delta-G solvation = 49.387163 kcal Electronic energy + Delta-G solvation = -25036.011992 eV Core-core repulsion = 21242.204766 eV Total energy + Delta-G solvation = -3793.807226 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.53781 -39.51531 -38.51845 -36.41341 -36.12582 -33.62790 -32.47062 -30.77978 -30.42376 -29.90834 -28.73777 -27.92723 -25.65429 -24.61814 -23.09002 -22.14454 -21.75161 -20.44303 -20.19307 -18.72008 -17.95249 -17.40537 -17.05917 -15.93221 -15.78275 -15.29216 -15.13496 -14.63281 -14.54954 -14.22193 -14.08787 -14.02113 -13.64329 -13.51658 -13.40895 -13.12569 -12.90528 -12.79516 -12.72053 -12.60921 -12.04186 -11.94781 -11.79849 -11.72065 -11.52466 -11.33125 -10.87751 -10.85255 -10.65142 -10.49917 -10.39087 -9.81864 -9.46365 -9.20339 -8.96683 -8.29070 -8.07674 -7.33248 -6.61052 -4.16669 0.70806 1.61074 1.98198 2.03618 2.22980 2.86696 3.07261 3.08279 3.13262 3.73104 3.86437 3.89274 4.24278 4.34939 4.42654 4.47539 4.62099 4.81003 4.84892 4.94887 4.97509 5.00771 5.05269 5.11667 5.16936 5.24519 5.33552 5.48712 5.52175 5.54556 5.66488 5.72130 5.91461 6.11606 6.22203 6.29947 6.45709 6.54313 6.60082 6.65002 6.82978 6.98096 7.08224 7.30676 7.31816 7.38442 7.70717 7.84978 8.22545 8.84005 9.50975 10.55599 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.036460 B = 0.001786 C = 0.001721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.781025 B =15674.397767 C =16268.660736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.151 3.849 3 C -0.167 4.167 4 N -0.358 5.358 5 C 0.083 3.917 6 C -0.230 4.230 7 C 0.021 3.979 8 C -0.240 4.240 9 C 0.432 3.568 10 O -0.501 6.501 11 C -0.266 4.266 12 C -0.029 4.029 13 C -0.206 4.206 14 C 0.174 3.826 15 O -0.162 6.162 16 C -0.393 4.393 17 H 0.098 0.902 18 C 0.042 3.958 19 N -0.852 5.852 20 Si 0.945 3.055 21 H -0.271 1.271 22 H -0.276 1.276 23 H -0.265 1.265 24 C -0.250 4.250 25 C -0.011 4.011 26 C 0.075 3.925 27 N -0.301 5.301 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.105 0.895 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.179 0.821 36 H 0.130 0.870 37 H 0.126 0.874 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.274 0.726 41 H 0.131 0.869 42 H 0.118 0.882 43 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.420 16.464 20.453 27.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.050 3.950 3 C -0.225 4.225 4 N -0.138 5.138 5 C -0.066 4.066 6 C -0.241 4.241 7 C 0.001 3.999 8 C -0.260 4.260 9 C 0.319 3.681 10 O -0.385 6.385 11 C -0.268 4.268 12 C -0.047 4.047 13 C -0.225 4.225 14 C 0.118 3.882 15 O -0.063 6.063 16 C -0.469 4.469 17 H 0.115 0.885 18 C -0.164 4.164 19 N -0.485 5.485 20 Si 0.769 3.231 21 H -0.197 1.197 22 H -0.201 1.201 23 H -0.189 1.189 24 C -0.269 4.269 25 C -0.029 4.029 26 C -0.112 4.112 27 N -0.120 5.120 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.123 0.877 32 H 0.103 0.897 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.196 0.804 36 H 0.148 0.852 37 H 0.144 0.856 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.084 0.916 41 H 0.149 0.851 42 H 0.136 0.864 43 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -9.592 16.081 21.501 28.512 hybrid contribution 0.293 0.243 -1.722 1.763 sum -9.300 16.324 19.780 27.280 Atomic orbital electron populations 1.22253 0.93315 1.03555 1.03278 1.21359 0.95033 0.92851 0.85763 1.22232 1.02542 0.93810 1.03910 1.48695 1.49137 1.07593 1.08360 1.23058 0.98681 0.99510 0.85371 1.19536 1.15608 0.93624 0.95377 1.21727 0.89859 0.98758 0.89546 1.22392 1.06966 1.00106 0.96525 1.18987 0.74064 0.87281 0.87721 1.90577 1.46173 1.28680 1.73063 1.19800 1.16164 0.95248 0.95628 1.20854 0.94431 0.91230 0.98192 1.20164 1.10118 0.99688 0.92541 1.19637 0.89410 0.87542 0.91651 1.83901 1.68667 1.32180 1.21535 1.21490 1.48416 0.97445 0.79550 0.88503 1.25392 0.96100 0.94186 1.00742 1.70012 1.41649 1.00057 1.36801 0.85649 0.79179 0.78461 0.79856 1.19650 1.20076 1.18930 1.21123 1.11162 0.93036 1.01564 1.20918 0.91859 0.97551 0.92617 1.24211 0.97478 0.99347 0.90116 1.77141 1.21107 0.92723 1.20989 0.91437 0.91739 0.90270 0.87701 0.89737 0.91265 0.91340 0.80390 0.85240 0.85618 0.86211 0.86019 0.91639 0.85118 0.86408 0.79326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.73 9.52 37.15 0.35 -0.37 16 2 C 0.15 0.81 3.91 -67.93 -0.27 0.54 16 3 C -0.17 -0.54 8.83 37.16 0.33 -0.21 16 4 N -0.36 -3.11 3.50 -54.19 -0.19 -3.30 16 5 C 0.08 0.70 10.62 -16.39 -0.17 0.52 16 6 C -0.23 -2.42 6.08 -105.12 -0.64 -3.06 16 7 C 0.02 0.25 9.64 -37.14 -0.36 -0.11 16 8 C -0.24 -3.23 8.87 -39.33 -0.35 -3.58 16 9 C 0.43 7.40 6.90 -34.42 -0.24 7.16 16 10 O -0.50 -9.66 16.11 5.08 0.08 -9.58 16 11 C -0.27 -4.97 5.88 -104.88 -0.62 -5.59 16 12 C -0.03 -0.50 9.42 -39.22 -0.37 -0.87 16 13 C -0.21 -4.20 9.97 -39.46 -0.39 -4.59 16 14 C 0.17 4.13 6.66 -38.91 -0.26 3.87 16 15 O -0.16 -4.48 9.74 0.74 0.01 -4.47 16 16 C -0.39 -10.66 9.48 30.92 0.29 -10.37 16 17 H 0.10 2.43 5.19 -52.49 -0.27 2.16 16 18 C 0.04 1.11 5.49 -17.51 -0.10 1.02 16 19 N -0.85 -24.11 13.67 55.48 0.76 -23.36 16 20 Si 0.94 19.88 29.55 -169.99 -5.02 14.86 16 21 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 22 H -0.28 -5.68 7.11 56.52 0.40 -5.27 16 23 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 24 C -0.25 -5.47 9.15 -39.46 -0.36 -5.83 16 25 C -0.01 -0.22 9.58 -39.22 -0.38 -0.59 16 26 C 0.08 0.80 11.39 -16.91 -0.19 0.61 16 27 N -0.30 -3.37 12.49 30.90 0.39 -2.98 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 33 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.07 0.18 7.13 -51.93 -0.37 -0.19 16 35 H 0.18 0.92 7.24 -52.49 -0.38 0.54 16 36 H 0.13 1.51 7.45 -52.49 -0.39 1.12 16 37 H 0.13 1.44 5.09 -52.49 -0.27 1.17 16 38 H 0.12 1.63 6.19 -52.48 -0.32 1.31 16 39 H 0.12 2.33 8.06 -52.49 -0.42 1.91 16 40 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 41 H 0.13 2.83 5.62 -52.49 -0.29 2.53 16 42 H 0.12 2.22 7.64 -52.48 -0.40 1.82 16 43 H 0.19 1.63 7.31 -52.49 -0.38 1.24 16 LS Contribution 371.88 15.07 5.60 5.60 Total: -1.00 -33.20 371.88 -7.27 -40.47 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -5.18 Total: 4.21 kcal Atomic # 6 Polarization: -17.75 SS G_CDS: -3.71 Total: -21.46 kcal Atomic # 7 Polarization: -30.59 SS G_CDS: 0.95 Total: -29.64 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: 0.09 Total: -14.04 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.20 -7.27 -40.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171981535.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.853 kcal (2) G-P(sol) polarization free energy of solvation -33.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds