Wall clock time and date at job start Tue Mar 31 2020 15:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.47330 * 2 1 4 4 N 1.46505 * 109.47439 * 240.00137 * 2 1 3 5 5 C 1.34375 * 125.73167 * 84.71333 * 4 2 1 6 6 C 1.38379 * 107.34831 * 179.90594 * 5 4 2 7 7 C 1.46866 * 126.45640 * 180.13945 * 6 5 4 8 8 C 1.35291 * 120.00284 * 180.23882 * 7 6 5 9 9 C 1.41641 * 120.00301 * 179.97438 * 8 7 6 10 10 O 1.21824 * 119.99534 * 359.97438 * 9 8 7 11 11 C 1.47710 * 120.00371 * 179.97438 * 9 8 7 12 12 C 1.39771 * 120.07321 * 359.72731 * 11 9 8 13 13 C 1.37660 * 119.92146 * 179.74210 * 12 11 9 14 14 C 1.39140 * 120.07542 * 0.53129 * 13 12 11 15 15 O 1.35570 * 119.92574 * 179.70170 * 14 13 12 16 16 C 1.34783 * 117.00075 * 174.47217 * 15 14 13 17 17 H 1.07996 * 120.00587 * 5.05187 * 16 15 14 18 18 C 1.38740 * 119.99894 * 185.05521 * 16 15 14 19 19 N 1.31496 * 119.99810 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00085 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47263 * 89.99757 * 20 18 16 22 22 H 1.48495 * 109.46949 * 210.00206 * 20 18 16 23 23 H 1.48511 * 109.46977 * 329.99868 * 20 18 16 24 24 C 1.39148 * 120.15235 * 359.71997 * 14 13 12 25 25 C 1.37651 * 120.07430 * 0.02562 * 24 14 13 26 26 C 1.41486 * 107.09297 * 0.35700 * 6 5 4 27 27 N 1.30422 * 108.02999 * 359.77938 * 26 6 5 28 28 H 1.09005 * 109.47395 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47056 * 60.00373 * 1 2 3 30 30 H 1.08998 * 109.47280 * 299.99733 * 1 2 3 31 31 H 1.09002 * 109.47513 * 119.99903 * 2 1 3 32 32 H 1.09006 * 109.46567 * 59.99645 * 3 2 1 33 33 H 1.09002 * 109.47024 * 179.97438 * 3 2 1 34 34 H 1.08992 * 109.46929 * 300.00376 * 3 2 1 35 35 H 1.07998 * 126.32345 * 0.04298 * 5 4 2 36 36 H 1.08001 * 119.99711 * 0.23360 * 7 6 5 37 37 H 1.08001 * 120.00005 * 359.97438 * 8 7 6 38 38 H 1.08003 * 120.04328 * 359.97438 * 12 11 9 39 39 H 1.08002 * 119.96076 * 180.22821 * 13 12 11 40 40 H 0.97008 * 120.00099 * 180.02562 * 19 18 16 41 41 H 1.08000 * 119.96194 * 179.97438 * 24 14 13 42 42 H 1.08004 * 120.03620 * 179.97438 * 25 24 14 43 43 H 1.07994 * 125.98217 * 179.73896 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1852 -0.1366 -2.4090 6 6 2.6629 -1.1247 -3.2518 7 6 2.9932 -0.9734 -4.6748 8 6 3.4490 -2.0342 -5.3800 9 6 3.7670 -1.8885 -6.7526 10 8 3.6296 -0.8079 -7.2981 11 6 4.2652 -3.0465 -7.5224 12 6 4.4288 -4.2855 -6.8965 13 6 4.8883 -5.3640 -7.6182 14 6 5.2002 -5.2190 -8.9664 15 8 5.6581 -6.2816 -9.6727 16 6 5.8330 -6.1063 -10.9976 17 1 5.6888 -5.1303 -11.4369 18 6 6.1980 -7.1798 -11.7972 19 7 6.3739 -8.3681 -11.2623 20 14 6.4396 -6.9370 -13.6335 21 1 7.8543 -6.5749 -13.9031 22 1 6.1061 -8.1957 -14.3473 23 1 5.5503 -5.8472 -14.1100 24 6 5.0434 -3.9856 -9.5913 25 6 4.5795 -2.9044 -8.8769 26 6 2.7685 -2.3095 -2.4857 27 7 2.3836 -2.0392 -1.2692 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.9856 0.8907 -2.6760 36 1 2.8721 -0.0153 -5.1584 37 1 3.5704 -2.9922 -4.8964 38 1 4.1915 -4.3977 -5.8489 39 1 5.0114 -6.3226 -7.1361 40 1 6.6296 -9.1186 -11.8213 41 1 5.2868 -3.8764 -10.6379 42 1 4.4585 -1.9473 -9.3625 43 1 3.1077 -3.2696 -2.8454 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171981535.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:16 Heat of formation + Delta-G solvation = 30.386976 kcal Electronic energy + Delta-G solvation = -25036.835902 eV Core-core repulsion = 21242.204766 eV Total energy + Delta-G solvation = -3794.631136 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.25149 -41.09655 -40.10148 -37.83511 -36.90036 -34.59570 -34.37762 -31.99282 -31.51006 -31.29317 -29.79135 -28.23005 -27.53455 -25.77831 -23.82477 -23.67956 -23.07424 -21.36818 -21.02170 -20.19346 -19.41160 -18.92563 -18.06642 -17.21026 -16.65005 -16.33104 -16.30143 -15.85317 -15.79088 -15.70943 -15.45832 -15.21786 -15.03896 -14.61854 -14.48356 -14.23539 -13.89553 -13.80135 -13.56337 -13.24278 -13.17934 -13.11349 -13.00628 -12.88933 -12.50872 -12.40427 -12.30807 -12.13630 -12.11300 -11.58155 -11.29562 -11.25374 -10.85348 -10.62134 -10.52232 -9.90279 -9.16442 -8.85968 -8.53638 -6.20648 -0.41753 0.44043 0.58157 1.01448 1.35862 1.43446 1.46310 1.53000 1.85518 2.14987 2.47398 2.90103 3.20153 3.28366 3.40775 3.58520 3.80741 3.88339 3.95300 4.02980 4.08436 4.09154 4.16940 4.35729 4.45371 4.54108 4.58533 4.63379 4.67894 4.72329 4.79525 4.82194 4.90633 4.94972 5.06953 5.16332 5.19074 5.21407 5.39336 5.45220 5.54059 5.60132 5.61039 5.74131 5.95508 6.01245 6.07295 6.65294 6.86797 6.90557 7.65379 8.68074 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.036460 B = 0.001786 C = 0.001721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.781025 B =15674.397767 C =16268.660736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.142 3.858 3 C -0.162 4.162 4 N -0.356 5.356 5 C 0.105 3.895 6 C -0.261 4.261 7 C 0.063 3.937 8 C -0.273 4.273 9 C 0.438 3.562 10 O -0.527 6.527 11 C -0.255 4.255 12 C -0.010 4.010 13 C -0.212 4.212 14 C 0.144 3.856 15 O -0.213 6.213 16 C -0.420 4.420 17 H 0.104 0.896 18 C -0.015 4.015 19 N -0.910 5.910 20 Si 1.019 2.981 21 H -0.262 1.262 22 H -0.269 1.269 23 H -0.254 1.254 24 C -0.256 4.256 25 C -0.021 4.021 26 C 0.072 3.928 27 N -0.334 5.334 28 H 0.047 0.953 29 H 0.066 0.934 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.214 0.786 36 H 0.133 0.867 37 H 0.147 0.853 38 H 0.169 0.831 39 H 0.131 0.869 40 H 0.276 0.724 41 H 0.125 0.875 42 H 0.128 0.872 43 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.919 19.620 22.914 32.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.042 3.958 3 C -0.220 4.220 4 N -0.134 5.134 5 C -0.046 4.046 6 C -0.273 4.273 7 C 0.043 3.957 8 C -0.293 4.293 9 C 0.328 3.672 10 O -0.413 6.413 11 C -0.257 4.257 12 C -0.028 4.028 13 C -0.231 4.231 14 C 0.091 3.909 15 O -0.118 6.118 16 C -0.496 4.496 17 H 0.121 0.879 18 C -0.215 4.215 19 N -0.546 5.546 20 Si 0.837 3.163 21 H -0.187 1.187 22 H -0.193 1.193 23 H -0.178 1.178 24 C -0.275 4.275 25 C -0.039 4.039 26 C -0.115 4.115 27 N -0.153 5.153 28 H 0.066 0.934 29 H 0.085 0.915 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.123 0.877 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.231 0.769 36 H 0.151 0.849 37 H 0.164 0.836 38 H 0.187 0.813 39 H 0.149 0.851 40 H 0.085 0.915 41 H 0.142 0.858 42 H 0.146 0.854 43 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -11.114 19.277 24.027 32.748 hybrid contribution 0.523 -0.311 -1.956 2.048 sum -10.591 18.966 22.072 30.968 Atomic orbital electron populations 1.22227 0.92405 1.02647 1.04592 1.21711 0.95712 0.93853 0.84515 1.22240 1.01980 0.92246 1.05510 1.49085 1.47948 1.06990 1.09403 1.23630 0.95778 1.00517 0.84697 1.19545 1.18171 0.94519 0.95032 1.21831 0.85867 0.98141 0.89894 1.22172 1.10592 1.01949 0.94585 1.19156 0.73095 0.85969 0.89026 1.90576 1.47519 1.29299 1.73896 1.20314 1.13594 0.96597 0.95212 1.21307 0.91881 0.89490 1.00135 1.20501 1.09830 1.01225 0.91526 1.20200 0.90259 0.87546 0.92932 1.83887 1.71983 1.33931 1.21970 1.21908 1.49410 0.98173 0.80102 0.87857 1.26607 0.95485 0.93616 1.05744 1.70138 1.44571 1.01159 1.38748 0.84588 0.79521 0.78775 0.73373 1.18676 1.19330 1.17808 1.21169 1.11534 0.93235 1.01597 1.21108 0.91872 0.97352 0.93563 1.24535 0.96816 1.00123 0.90002 1.77118 1.22276 0.94392 1.21533 0.93407 0.91471 0.87935 0.87961 0.87662 0.92088 0.90295 0.76922 0.84944 0.83572 0.81330 0.85119 0.91468 0.85765 0.85374 0.78036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.94 9.52 71.98 0.69 -0.25 16 2 C 0.14 1.10 3.91 44.99 0.18 1.27 16 3 C -0.16 -0.43 8.83 71.98 0.64 0.21 16 4 N -0.36 -5.14 3.50 -325.37 -1.14 -6.27 16 5 C 0.10 1.36 10.62 84.34 0.90 2.25 16 6 C -0.26 -4.61 6.08 -20.19 -0.12 -4.73 16 7 C 0.06 1.27 9.64 23.85 0.23 1.50 16 8 C -0.27 -6.49 8.87 22.43 0.20 -6.29 16 9 C 0.44 13.99 6.90 25.62 0.18 14.17 16 10 O -0.53 -19.35 16.11 -4.75 -0.08 -19.42 16 11 C -0.26 -9.10 5.88 -20.03 -0.12 -9.22 16 12 C -0.01 -0.34 9.42 22.50 0.21 -0.13 16 13 C -0.21 -8.63 9.97 22.35 0.22 -8.41 16 14 C 0.14 7.07 6.66 22.71 0.15 7.22 16 15 O -0.21 -12.52 9.74 -20.28 -0.20 -12.72 16 16 C -0.42 -24.09 9.48 67.94 0.64 -23.45 16 17 H 0.10 5.48 5.19 -2.91 -0.02 5.47 16 18 C -0.02 -0.85 5.49 84.86 0.47 -0.38 16 19 N -0.91 -54.35 13.67 21.63 0.30 -54.06 16 20 Si 1.02 42.13 29.55 68.60 2.03 44.15 16 21 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 22 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 23 H -0.25 -9.90 7.11 99.48 0.71 -9.19 16 24 C -0.26 -11.59 9.15 22.35 0.20 -11.39 16 25 C -0.02 -0.82 9.58 22.50 0.22 -0.60 16 26 C 0.07 1.34 11.39 85.70 0.98 2.31 16 27 N -0.33 -6.76 12.49 -56.16 -0.70 -7.46 16 28 H 0.05 0.48 8.14 -2.38 -0.02 0.46 16 29 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.10 0.13 8.14 -2.39 -0.02 0.11 16 31 H 0.10 0.85 8.14 -2.39 -0.02 0.84 16 32 H 0.10 -0.12 8.14 -2.38 -0.02 -0.14 16 33 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 34 H 0.08 0.07 7.13 -2.39 -0.02 0.05 16 35 H 0.21 1.10 7.24 -2.91 -0.02 1.08 16 36 H 0.13 2.62 7.45 -2.91 -0.02 2.59 16 37 H 0.15 2.76 5.09 -2.91 -0.01 2.75 16 38 H 0.17 3.88 6.19 -2.91 -0.02 3.86 16 39 H 0.13 5.03 8.06 -2.91 -0.02 5.01 16 40 H 0.28 15.06 8.31 -92.70 -0.77 14.29 16 41 H 0.12 5.66 5.62 -2.91 -0.02 5.65 16 42 H 0.13 4.78 7.64 -2.91 -0.02 4.76 16 43 H 0.20 2.92 7.31 -2.91 -0.02 2.90 16 Total: -1.00 -77.22 371.88 7.10 -70.12 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: 1.04 Total: 21.58 kcal Atomic # 6 Polarization: -41.77 SS G_CDS: 5.85 Total: -35.92 kcal Atomic # 7 Polarization: -66.25 SS G_CDS: -1.54 Total: -67.79 kcal Atomic # 8 Polarization: -31.87 SS G_CDS: -0.27 Total: -32.14 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.15 kcal Total: -77.22 7.10 -70.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171981535.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.504 kcal (2) G-P(sol) polarization free energy of solvation -77.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds