Wall clock time and date at job start Tue Mar 31 2020 15:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47547 * 2 1 4 4 N 1.46498 * 109.47361 * 184.66272 * 3 2 1 5 5 C 1.36790 * 119.99728 * 261.66845 * 4 3 2 6 6 H 1.07997 * 120.00116 * 143.61895 * 5 4 3 7 7 C 1.39106 * 120.00053 * 323.62136 * 5 4 3 8 8 N 1.31323 * 120.00297 * 163.61987 * 7 5 4 9 9 Si 1.86801 * 119.99737 * 343.61373 * 7 5 4 10 10 H 1.48499 * 109.47084 * 95.53761 * 9 7 5 11 11 H 1.48504 * 109.47162 * 215.53083 * 9 7 5 12 12 H 1.48490 * 109.47279 * 335.53489 * 9 7 5 13 13 C 1.34777 * 120.00231 * 81.94554 * 4 3 2 14 14 O 1.21564 * 119.99602 * 182.40393 * 13 4 3 15 15 C 1.48021 * 119.99659 * 2.39972 * 13 4 3 16 16 C 1.39202 * 119.70118 * 174.20270 * 15 13 4 17 17 C 1.39207 * 118.97403 * 179.73508 * 16 15 13 18 18 O 1.35740 * 120.81133 * 180.28229 * 17 16 15 19 19 C 1.35888 * 118.00143 * 4.51475 * 18 17 16 20 20 C 1.38750 * 120.05682 * 257.29161 * 19 18 17 21 21 C 1.38141 * 119.94047 * 179.72110 * 20 19 18 22 22 C 1.38265 * 120.05482 * 0.55314 * 21 20 19 23 23 C 1.38264 * 120.11944 * 359.72130 * 22 21 20 24 24 C 1.38137 * 120.05640 * 0.02562 * 23 22 21 25 25 C 1.39274 * 118.37934 * 0.52748 * 17 16 15 26 26 C 1.38306 * 119.29599 * 359.73264 * 25 17 16 27 27 N 1.31619 * 120.98182 * 359.97438 * 26 25 17 28 28 H 1.09005 * 109.47015 * 184.86466 * 1 2 3 29 29 H 1.08997 * 109.47250 * 304.86749 * 1 2 3 30 30 H 1.09003 * 109.46952 * 64.86584 * 1 2 3 31 31 H 1.08998 * 109.47174 * 239.99499 * 2 1 3 32 32 H 1.09001 * 109.47161 * 119.99903 * 2 1 3 33 33 H 1.09003 * 109.47043 * 64.65650 * 3 2 1 34 34 H 1.09001 * 109.46883 * 304.66400 * 3 2 1 35 35 H 0.97000 * 120.00091 * 179.97438 * 8 7 5 36 36 H 1.08002 * 120.51382 * 359.97394 * 16 15 13 37 37 H 1.08003 * 120.03059 * 359.97438 * 20 19 18 38 38 H 1.07997 * 119.97136 * 180.29265 * 21 20 19 39 39 H 1.08005 * 119.94316 * 179.70131 * 22 21 20 40 40 H 1.08000 * 119.97691 * 180.02562 * 23 22 21 41 41 H 1.08000 * 120.03121 * 179.97438 * 24 23 22 42 42 H 1.07992 * 120.35564 * 179.75349 * 25 17 16 43 43 H 1.08007 * 119.50452 * 180.02562 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5008 1.4439 -0.1123 5 6 4.2727 1.5844 1.0082 6 1 5.2045 1.0453 1.0931 7 6 3.8573 2.4218 2.0385 8 7 4.4058 2.3220 3.2275 9 14 2.5193 3.6885 1.7305 10 1 1.2063 3.1324 2.1453 11 1 2.8081 4.9147 2.5169 12 1 2.4798 4.0253 0.2849 13 6 4.0840 1.3124 -1.3202 14 8 5.2956 1.2698 -1.4086 15 6 3.2490 1.2200 -2.5390 16 6 3.8562 1.2063 -3.7915 17 6 3.0568 1.1133 -4.9274 18 8 3.6098 1.0911 -6.1668 19 6 4.9653 1.0679 -6.2604 20 6 5.6594 2.2249 -6.5841 21 6 7.0377 2.1999 -6.6729 22 6 7.7247 1.0208 -6.4507 23 6 7.0350 -0.1348 -6.1335 24 6 5.6571 -0.1141 -6.0383 25 6 1.6755 1.0487 -4.7613 26 6 1.1456 1.0731 -3.4840 27 7 1.9267 1.1557 -2.4279 28 1 -0.3633 -1.0240 0.0872 29 1 -0.3633 0.5875 0.8431 30 1 -0.3633 0.4365 -0.9304 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.7465 1.9317 0.9288 34 1 1.6102 1.9798 -0.8453 35 1 4.1164 2.9061 3.9457 36 1 4.9310 1.2630 -3.8806 37 1 5.1229 3.1451 -6.7625 38 1 7.5788 3.1012 -6.9202 39 1 8.8020 1.0022 -6.5253 40 1 7.5740 -1.0545 -5.9600 41 1 5.1187 -1.0171 -5.7910 42 1 1.0251 0.9799 -5.6206 43 1 0.0749 1.0228 -3.3513 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174241355.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:19 Heat of formation + Delta-G solvation = 33.532349 kcal Electronic energy + Delta-G solvation = -27694.284857 eV Core-core repulsion = 23899.790115 eV Total energy + Delta-G solvation = -3794.494743 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.14786 -39.77419 -38.33883 -37.46733 -35.53795 -32.91183 -31.80431 -31.48444 -31.20542 -30.96554 -29.88376 -26.01439 -25.56315 -24.11172 -23.31905 -22.89561 -21.93555 -21.24648 -20.03164 -18.43953 -17.17426 -17.01206 -16.62582 -16.16558 -15.94033 -15.79612 -15.61222 -14.71573 -14.58973 -14.46044 -13.82380 -13.76687 -13.67520 -13.61498 -13.58999 -13.06691 -12.74596 -12.61309 -12.40420 -12.20979 -11.99037 -11.84822 -11.56386 -11.33086 -11.17020 -10.96694 -10.84100 -10.31418 -10.02664 -9.78646 -9.24493 -9.19239 -9.07486 -9.02644 -8.93918 -8.73965 -8.48889 -7.73720 -6.47876 -4.00157 0.89400 0.98281 1.16050 1.40746 2.92435 3.04278 3.19532 3.25728 3.47846 3.65281 4.08514 4.20108 4.36081 4.60492 4.69390 4.70802 4.83848 4.90861 4.96207 5.14505 5.17754 5.28051 5.31127 5.32770 5.62868 5.69047 5.70978 5.76187 5.77089 5.94080 6.02587 6.09475 6.14656 6.15463 6.18630 6.28592 6.41103 6.47159 6.49875 6.56054 6.71585 6.84367 7.10692 7.39522 7.48003 8.05849 8.21570 8.48094 8.87590 9.23553 9.73469 10.62407 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.014478 B = 0.004114 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.454546 B = 6803.763177 C = 7894.942758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.116 4.116 3 C 0.086 3.914 4 N -0.427 5.427 5 C -0.307 4.307 6 H 0.111 0.889 7 C 0.060 3.940 8 N -0.855 5.855 9 Si 0.889 3.111 10 H -0.271 1.271 11 H -0.289 1.289 12 H -0.263 1.263 13 C 0.489 3.511 14 O -0.567 6.567 15 C 0.142 3.858 16 C -0.200 4.200 17 C 0.153 3.847 18 O -0.255 6.255 19 C 0.078 3.922 20 C -0.120 4.120 21 C -0.106 4.106 22 C -0.115 4.115 23 C -0.103 4.103 24 C -0.126 4.126 25 C -0.202 4.202 26 C 0.123 3.877 27 N -0.473 5.473 28 H 0.046 0.954 29 H 0.047 0.953 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.105 0.895 35 H 0.277 0.723 36 H 0.148 0.852 37 H 0.131 0.869 38 H 0.131 0.869 39 H 0.128 0.872 40 H 0.131 0.869 41 H 0.130 0.870 42 H 0.139 0.861 43 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.406 -2.355 -18.289 18.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.155 4.155 3 C -0.037 4.037 4 N -0.144 5.144 5 C -0.435 4.435 6 H 0.128 0.872 7 C -0.148 4.148 8 N -0.490 5.490 9 Si 0.718 3.282 10 H -0.198 1.198 11 H -0.216 1.216 12 H -0.187 1.187 13 C 0.278 3.722 14 O -0.450 6.450 15 C 0.005 3.995 16 C -0.222 4.222 17 C 0.103 3.897 18 O -0.166 6.166 19 C 0.036 3.964 20 C -0.138 4.138 21 C -0.124 4.124 22 C -0.133 4.133 23 C -0.121 4.121 24 C -0.144 4.144 25 C -0.224 4.224 26 C -0.035 4.035 27 N -0.189 5.189 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.122 0.878 35 H 0.087 0.913 36 H 0.166 0.834 37 H 0.149 0.851 38 H 0.149 0.851 39 H 0.146 0.854 40 H 0.149 0.851 41 H 0.148 0.852 42 H 0.157 0.843 43 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -4.200 -2.294 -17.435 18.080 hybrid contribution -0.299 0.648 -0.727 1.019 sum -4.499 -1.647 -18.162 18.784 Atomic orbital electron populations 1.21640 0.96329 1.00603 1.01309 1.21633 0.94861 0.97401 1.01573 1.22393 0.81742 0.97809 1.01731 1.43720 1.05281 1.60059 1.05372 1.19236 1.06562 1.26038 0.91677 0.87174 1.25431 0.97718 0.96879 0.94739 1.69659 1.41748 1.36819 1.00785 0.86761 0.81082 0.80966 0.79438 1.19825 1.21621 1.18739 1.17660 0.86865 0.85774 0.81949 1.90650 1.13126 1.55991 1.85226 1.21639 0.89780 0.93869 0.94210 1.22165 1.02107 1.06297 0.91659 1.19370 0.92688 0.94602 0.83089 1.84328 1.18893 1.87820 1.25563 1.18645 0.81175 0.93832 1.02715 1.21276 0.94577 0.97157 1.00791 1.21064 0.93262 0.98524 0.99510 1.21284 1.00407 0.92755 0.98887 1.21076 0.93327 0.98967 0.98720 1.21461 0.95063 0.97772 1.00148 1.21482 0.91906 1.09120 0.99873 1.22778 1.00286 0.93594 0.86878 1.68423 1.04643 1.13865 1.31933 0.93478 0.93361 0.92711 0.92006 0.92395 0.92626 0.87789 0.91251 0.83430 0.85094 0.85106 0.85361 0.85118 0.85220 0.84272 0.81932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.91 37.16 0.37 -1.70 16 2 C -0.12 -2.18 5.45 -26.73 -0.15 -2.32 16 3 C 0.09 1.87 3.31 -4.04 -0.01 1.85 16 4 N -0.43 -10.91 2.25 -115.83 -0.26 -11.17 16 5 C -0.31 -8.85 9.45 -15.02 -0.14 -8.99 16 6 H 0.11 3.53 7.86 -52.49 -0.41 3.11 16 7 C 0.06 1.66 5.37 -17.45 -0.09 1.57 16 8 N -0.85 -24.60 13.95 55.50 0.77 -23.83 16 9 Si 0.89 21.15 24.64 -169.99 -4.19 16.96 16 10 H -0.27 -6.02 6.76 56.52 0.38 -5.64 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.26 -6.27 6.96 56.52 0.39 -5.87 16 13 C 0.49 12.29 7.51 -12.25 -0.09 12.20 16 14 O -0.57 -15.96 16.18 5.31 0.09 -15.87 16 15 C 0.14 2.90 6.43 -83.05 -0.53 2.36 16 16 C -0.20 -3.64 8.59 -38.86 -0.33 -3.98 16 17 C 0.15 2.32 6.66 -38.84 -0.26 2.06 16 18 O -0.26 -3.64 10.00 -3.09 -0.03 -3.67 16 19 C 0.08 1.05 4.34 -39.20 -0.17 0.88 16 20 C -0.12 -1.44 9.99 -39.43 -0.39 -1.83 16 21 C -0.11 -1.10 10.04 -39.61 -0.40 -1.50 16 22 C -0.12 -1.17 10.04 -39.56 -0.40 -1.57 16 23 C -0.10 -1.12 10.04 -39.61 -0.40 -1.52 16 24 C -0.13 -1.58 9.26 -39.43 -0.37 -1.95 16 25 C -0.20 -2.60 10.08 -39.17 -0.39 -2.99 16 26 C 0.12 1.63 11.17 -17.62 -0.20 1.44 16 27 N -0.47 -8.26 4.33 -9.88 -0.04 -8.30 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 1.17 6.73 -51.93 -0.35 0.82 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.06 1.26 3.12 -51.93 -0.16 1.10 16 34 H 0.10 2.13 5.33 -51.98 -0.28 1.85 16 35 H 0.28 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.15 2.86 6.24 -52.49 -0.33 2.53 16 37 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16 38 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 39 H 0.13 0.98 8.06 -52.48 -0.42 0.55 16 40 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 41 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 42 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 43 H 0.16 1.54 8.06 -52.48 -0.42 1.12 16 LS Contribution 356.38 15.07 5.37 5.37 Total: -1.00 -32.90 356.38 -7.59 -40.49 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -5.34 Total: 6.02 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: -3.96 Total: -5.99 kcal Atomic # 7 Polarization: -43.78 SS G_CDS: 0.47 Total: -43.30 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: 0.06 Total: -19.54 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.19 Total: 16.96 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.90 -7.59 -40.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174241355.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.021 kcal (2) G-P(sol) polarization free energy of solvation -32.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds