Wall clock time and date at job start Tue Mar 31 2020 15:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47547 * 2 1 4 4 N 1.46498 * 109.47361 * 184.66272 * 3 2 1 5 5 C 1.36790 * 119.99728 * 261.66845 * 4 3 2 6 6 H 1.07997 * 120.00116 * 143.61895 * 5 4 3 7 7 C 1.39106 * 120.00053 * 323.62136 * 5 4 3 8 8 N 1.31323 * 120.00297 * 163.61987 * 7 5 4 9 9 Si 1.86801 * 119.99737 * 343.61373 * 7 5 4 10 10 H 1.48499 * 109.47084 * 95.53761 * 9 7 5 11 11 H 1.48504 * 109.47162 * 215.53083 * 9 7 5 12 12 H 1.48490 * 109.47279 * 335.53489 * 9 7 5 13 13 C 1.34777 * 120.00231 * 81.94554 * 4 3 2 14 14 O 1.21564 * 119.99602 * 182.40393 * 13 4 3 15 15 C 1.48021 * 119.99659 * 2.39972 * 13 4 3 16 16 C 1.39202 * 119.70118 * 174.20270 * 15 13 4 17 17 C 1.39207 * 118.97403 * 179.73508 * 16 15 13 18 18 O 1.35740 * 120.81133 * 180.28229 * 17 16 15 19 19 C 1.35888 * 118.00143 * 4.51475 * 18 17 16 20 20 C 1.38750 * 120.05682 * 257.29161 * 19 18 17 21 21 C 1.38141 * 119.94047 * 179.72110 * 20 19 18 22 22 C 1.38265 * 120.05482 * 0.55314 * 21 20 19 23 23 C 1.38264 * 120.11944 * 359.72130 * 22 21 20 24 24 C 1.38137 * 120.05640 * 0.02562 * 23 22 21 25 25 C 1.39274 * 118.37934 * 0.52748 * 17 16 15 26 26 C 1.38306 * 119.29599 * 359.73264 * 25 17 16 27 27 N 1.31619 * 120.98182 * 359.97438 * 26 25 17 28 28 H 1.09005 * 109.47015 * 184.86466 * 1 2 3 29 29 H 1.08997 * 109.47250 * 304.86749 * 1 2 3 30 30 H 1.09003 * 109.46952 * 64.86584 * 1 2 3 31 31 H 1.08998 * 109.47174 * 239.99499 * 2 1 3 32 32 H 1.09001 * 109.47161 * 119.99903 * 2 1 3 33 33 H 1.09003 * 109.47043 * 64.65650 * 3 2 1 34 34 H 1.09001 * 109.46883 * 304.66400 * 3 2 1 35 35 H 0.97000 * 120.00091 * 179.97438 * 8 7 5 36 36 H 1.08002 * 120.51382 * 359.97394 * 16 15 13 37 37 H 1.08003 * 120.03059 * 359.97438 * 20 19 18 38 38 H 1.07997 * 119.97136 * 180.29265 * 21 20 19 39 39 H 1.08005 * 119.94316 * 179.70131 * 22 21 20 40 40 H 1.08000 * 119.97691 * 180.02562 * 23 22 21 41 41 H 1.08000 * 120.03121 * 179.97438 * 24 23 22 42 42 H 1.07992 * 120.35564 * 179.75349 * 25 17 16 43 43 H 1.08007 * 119.50452 * 180.02562 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5008 1.4439 -0.1123 5 6 4.2727 1.5844 1.0082 6 1 5.2045 1.0453 1.0931 7 6 3.8573 2.4218 2.0385 8 7 4.4058 2.3220 3.2275 9 14 2.5193 3.6885 1.7305 10 1 1.2063 3.1324 2.1453 11 1 2.8081 4.9147 2.5169 12 1 2.4798 4.0253 0.2849 13 6 4.0840 1.3124 -1.3202 14 8 5.2956 1.2698 -1.4086 15 6 3.2490 1.2200 -2.5390 16 6 3.8562 1.2063 -3.7915 17 6 3.0568 1.1133 -4.9274 18 8 3.6098 1.0911 -6.1668 19 6 4.9653 1.0679 -6.2604 20 6 5.6594 2.2249 -6.5841 21 6 7.0377 2.1999 -6.6729 22 6 7.7247 1.0208 -6.4507 23 6 7.0350 -0.1348 -6.1335 24 6 5.6571 -0.1141 -6.0383 25 6 1.6755 1.0487 -4.7613 26 6 1.1456 1.0731 -3.4840 27 7 1.9267 1.1557 -2.4279 28 1 -0.3633 -1.0240 0.0872 29 1 -0.3633 0.5875 0.8431 30 1 -0.3633 0.4365 -0.9304 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.7465 1.9317 0.9288 34 1 1.6102 1.9798 -0.8453 35 1 4.1164 2.9061 3.9457 36 1 4.9310 1.2630 -3.8806 37 1 5.1229 3.1451 -6.7625 38 1 7.5788 3.1012 -6.9202 39 1 8.8020 1.0022 -6.5253 40 1 7.5740 -1.0545 -5.9600 41 1 5.1187 -1.0171 -5.7910 42 1 1.0251 0.9799 -5.6206 43 1 0.0749 1.0228 -3.3513 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174241355.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:18 Heat of formation + Delta-G solvation = 13.618694 kcal Electronic energy + Delta-G solvation = -27695.148378 eV Core-core repulsion = 23899.790115 eV Total energy + Delta-G solvation = -3795.358264 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.33060 -41.17003 -39.76886 -38.62351 -37.43327 -34.77398 -33.34846 -32.92546 -32.37384 -32.03436 -30.86801 -27.83451 -27.18402 -25.22641 -24.89258 -23.79998 -22.98626 -22.73177 -21.57333 -19.77857 -18.98141 -18.47282 -17.88243 -17.54517 -17.19363 -17.13119 -16.97199 -16.29195 -16.03583 -15.69430 -15.42418 -15.01805 -14.94691 -14.89814 -14.69204 -14.50115 -14.35734 -14.11867 -13.77277 -13.59232 -13.39938 -13.17599 -12.97972 -12.54055 -12.48346 -12.36017 -12.07689 -12.07083 -11.80098 -11.43577 -11.14243 -10.84859 -10.34705 -10.20855 -10.08909 -10.05169 -9.77227 -9.67755 -8.59712 -6.22123 -0.36539 -0.04235 0.20235 0.27902 1.16577 1.27064 1.39582 1.86400 1.91945 2.11401 2.48822 2.72599 2.75164 2.96510 3.28224 3.56137 3.78826 3.84957 3.85608 4.01162 4.11478 4.13886 4.25099 4.33320 4.37113 4.40413 4.45359 4.59106 4.68705 4.73210 4.78123 4.90597 4.93153 4.96202 5.14495 5.26014 5.27459 5.30328 5.37683 5.39144 5.42944 5.52626 5.65386 5.76483 5.94284 6.30752 6.43108 6.74269 6.87825 7.17230 7.73612 8.56245 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.014478 B = 0.004114 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.454546 B = 6803.763177 C = 7894.942758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.111 4.111 3 C 0.085 3.915 4 N -0.442 5.442 5 C -0.336 4.336 6 H 0.050 0.950 7 C 0.017 3.983 8 N -0.901 5.901 9 Si 0.956 3.044 10 H -0.237 1.237 11 H -0.284 1.284 12 H -0.263 1.263 13 C 0.485 3.515 14 O -0.615 6.615 15 C 0.117 3.883 16 C -0.204 4.204 17 C 0.152 3.848 18 O -0.251 6.251 19 C 0.051 3.949 20 C -0.132 4.132 21 C -0.109 4.109 22 C -0.117 4.117 23 C -0.113 4.113 24 C -0.143 4.143 25 C -0.171 4.171 26 C 0.132 3.868 27 N -0.482 5.482 28 H 0.066 0.934 29 H 0.049 0.951 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.029 0.971 33 H 0.046 0.954 34 H 0.125 0.875 35 H 0.284 0.716 36 H 0.125 0.875 37 H 0.141 0.859 38 H 0.158 0.842 39 H 0.157 0.843 40 H 0.150 0.850 41 H 0.129 0.871 42 H 0.185 0.815 43 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.284 -1.620 -21.377 22.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.149 4.149 3 C -0.036 4.036 4 N -0.159 5.159 5 C -0.465 4.465 6 H 0.068 0.932 7 C -0.187 4.187 8 N -0.538 5.538 9 Si 0.779 3.221 10 H -0.162 1.162 11 H -0.211 1.211 12 H -0.187 1.187 13 C 0.275 3.725 14 O -0.501 6.501 15 C -0.019 4.019 16 C -0.226 4.226 17 C 0.101 3.899 18 O -0.161 6.161 19 C 0.009 3.991 20 C -0.150 4.150 21 C -0.127 4.127 22 C -0.134 4.134 23 C -0.131 4.131 24 C -0.161 4.161 25 C -0.191 4.191 26 C -0.026 4.026 27 N -0.198 5.198 28 H 0.085 0.915 29 H 0.068 0.932 30 H 0.099 0.901 31 H 0.076 0.924 32 H 0.048 0.952 33 H 0.063 0.937 34 H 0.142 0.858 35 H 0.094 0.906 36 H 0.142 0.858 37 H 0.159 0.841 38 H 0.176 0.824 39 H 0.174 0.826 40 H 0.168 0.832 41 H 0.147 0.853 42 H 0.202 0.798 43 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -8.100 -1.581 -20.525 22.122 hybrid contribution 1.002 0.300 -0.050 1.047 sum -7.098 -1.281 -20.575 21.803 Atomic orbital electron populations 1.21610 0.92340 1.02286 1.02815 1.21582 0.98166 0.95116 1.00041 1.22655 0.79193 0.99869 1.01874 1.43801 1.06757 1.60862 1.04483 1.18797 1.05956 1.27490 0.94208 0.93238 1.26192 1.00506 0.98166 0.93813 1.69762 1.44075 1.38134 1.01815 0.85730 0.79310 0.77843 0.79204 1.16164 1.21087 1.18729 1.18495 0.87000 0.83510 0.83480 1.90590 1.15702 1.57343 1.86480 1.20784 0.90864 0.98064 0.92170 1.21980 1.01466 1.06923 0.92260 1.19579 0.93577 0.94226 0.82555 1.84351 1.19502 1.87610 1.24670 1.18902 0.81047 0.94736 1.04410 1.21528 0.95490 0.97142 1.00850 1.21464 0.92889 0.99755 0.98592 1.21704 1.01943 0.92292 0.97493 1.21419 0.92974 1.00337 0.98360 1.21614 0.95991 0.97721 1.00817 1.22054 0.90930 1.04754 1.01364 1.23648 1.01973 0.91213 0.85793 1.68206 1.03172 1.14143 1.34229 0.91546 0.93188 0.90057 0.92411 0.95202 0.93653 0.85758 0.90571 0.85758 0.84134 0.82417 0.82583 0.83247 0.85339 0.79783 0.76549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.38 9.91 71.98 0.71 -2.67 16 2 C -0.11 -4.05 5.45 30.59 0.17 -3.88 16 3 C 0.09 3.65 3.31 86.38 0.29 3.94 16 4 N -0.44 -23.64 2.25 -638.65 -1.44 -25.07 16 5 C -0.34 -20.92 9.45 84.13 0.80 -20.12 16 6 H 0.05 3.56 7.86 -2.91 -0.02 3.54 16 7 C 0.02 0.98 5.37 84.98 0.46 1.43 16 8 N -0.90 -54.72 13.95 21.69 0.30 -54.42 16 9 Si 0.96 44.02 24.64 68.60 1.69 45.71 16 10 H -0.24 -9.56 6.76 99.48 0.67 -8.89 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 12 H -0.26 -12.00 6.96 99.48 0.69 -11.31 16 13 C 0.49 25.74 7.51 86.84 0.65 26.39 16 14 O -0.62 -37.52 16.18 -3.92 -0.06 -37.59 16 15 C 0.12 4.77 6.43 41.82 0.27 5.04 16 16 C -0.20 -7.43 8.59 22.73 0.20 -7.23 16 17 C 0.15 4.24 6.66 22.75 0.15 4.39 16 18 O -0.25 -6.68 10.00 -33.96 -0.34 -7.02 16 19 C 0.05 1.34 4.34 22.52 0.10 1.44 16 20 C -0.13 -3.08 9.99 22.37 0.22 -2.85 16 21 C -0.11 -2.14 10.04 22.25 0.22 -1.92 16 22 C -0.12 -2.22 10.04 22.28 0.22 -2.00 16 23 C -0.11 -2.43 10.04 22.25 0.22 -2.21 16 24 C -0.14 -3.62 9.26 22.37 0.21 -3.41 16 25 C -0.17 -3.46 10.08 22.54 0.23 -3.23 16 26 C 0.13 2.76 11.17 84.74 0.95 3.71 16 27 N -0.48 -15.45 4.33 -185.17 -0.80 -16.25 16 28 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 29 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.06 2.14 6.73 -2.39 -0.02 2.12 16 32 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.05 2.01 3.12 -2.39 -0.01 2.00 16 34 H 0.13 4.78 5.33 -2.48 -0.01 4.77 16 35 H 0.28 15.67 8.31 -92.71 -0.77 14.90 16 36 H 0.12 5.08 6.24 -2.91 -0.02 5.06 16 37 H 0.14 2.86 8.06 -2.91 -0.02 2.84 16 38 H 0.16 2.14 8.06 -2.91 -0.02 2.11 16 39 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 40 H 0.15 2.51 8.06 -2.91 -0.02 2.48 16 41 H 0.13 3.12 8.06 -2.91 -0.02 3.09 16 42 H 0.18 2.22 8.06 -2.91 -0.02 2.20 16 43 H 0.22 2.27 8.06 -2.91 -0.02 2.24 16 Total: -1.00 -81.56 356.38 6.39 -75.17 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: 0.98 Total: 22.66 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: 6.06 Total: -3.18 kcal Atomic # 7 Polarization: -93.81 SS G_CDS: -1.94 Total: -95.75 kcal Atomic # 8 Polarization: -44.21 SS G_CDS: -0.40 Total: -44.61 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.69 Total: 45.71 kcal Total: -81.56 6.39 -75.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174241355.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.791 kcal (2) G-P(sol) polarization free energy of solvation -81.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds