Wall clock time and date at job start Tue Mar 31 2020 14:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50706 * 110.54263 * 2 1 4 4 C 1.38232 * 119.99892 * 357.18923 * 3 2 1 5 5 C 1.38239 * 120.00101 * 179.78281 * 4 3 2 6 6 C 1.38239 * 119.99637 * 0.46789 * 5 4 3 7 7 C 1.38227 * 119.99874 * 359.76449 * 6 5 4 8 8 C 1.38231 * 120.00188 * 177.45970 * 3 2 1 9 9 C 1.54232 * 110.73752 * 237.06730 * 2 1 3 10 10 C 1.51317 * 103.55161 * 241.41804 * 9 2 1 11 11 O 1.21224 * 125.39913 * 180.02562 * 10 9 2 12 12 N 1.33881 * 109.20848 * 0.02562 * 10 9 2 13 13 C 1.46495 * 122.76240 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47202 * 269.99580 * 13 12 10 15 15 H 1.08997 * 109.47533 * 305.00075 * 14 13 12 16 16 C 1.47199 * 109.47141 * 65.00211 * 14 13 12 17 17 N 5.28357 * 95.18119 * 182.17807 * 2 1 3 18 18 C 1.53004 * 109.47280 * 185.00266 * 14 13 12 19 19 C 1.50702 * 109.47209 * 175.00301 * 18 14 13 20 20 H 1.08002 * 119.99638 * 359.97438 * 19 18 14 21 21 C 1.37875 * 120.00176 * 179.97438 * 19 18 14 22 22 N 1.31517 * 119.99774 * 0.02562 * 21 19 18 23 23 Si 1.86791 * 120.00120 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47188 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46976 * 120.00130 * 23 21 19 26 26 H 1.48504 * 109.47270 * 240.00105 * 23 21 19 27 27 C 1.33875 * 114.47294 * 359.97438 * 12 10 9 28 28 O 1.21234 * 125.39588 * 179.97438 * 27 12 10 29 29 H 1.09005 * 109.47141 * 60.69685 * 1 2 3 30 30 H 1.09000 * 109.47571 * 180.69770 * 1 2 3 31 31 H 1.09004 * 109.47309 * 300.70298 * 1 2 3 32 32 H 1.08008 * 119.99918 * 359.97438 * 4 3 2 33 33 H 1.08000 * 120.00171 * 180.25195 * 5 4 3 34 34 H 1.07991 * 119.99477 * 179.78583 * 6 5 4 35 35 H 1.08002 * 120.00293 * 179.97438 * 7 6 5 36 36 H 1.08005 * 120.00077 * 359.97438 * 8 3 2 37 37 H 1.08995 * 110.60264 * 359.93015 * 9 2 1 38 38 H 1.08990 * 110.60962 * 122.90670 * 9 2 1 39 39 H 1.09003 * 109.47323 * 30.00178 * 13 12 10 40 40 H 1.09004 * 109.47330 * 149.99597 * 13 12 10 41 41 H 1.09002 * 109.46952 * 295.00280 * 18 14 13 42 42 H 1.08997 * 109.47076 * 54.99960 * 18 14 13 43 43 H 0.97002 * 120.00105 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0588 1.4112 0.0000 4 6 1.1816 2.4780 -0.0587 5 6 1.6665 3.7726 -0.0542 6 6 3.0290 4.0001 -0.0007 7 6 3.9062 2.9333 0.0532 8 6 3.4212 1.6388 0.0531 9 6 2.0761 -0.7842 -1.2106 10 6 2.8598 -1.9132 -0.5775 11 8 3.4604 -2.7759 -1.1812 12 7 2.7848 -1.8083 0.7551 13 6 3.4406 -2.7528 1.6628 14 6 2.4847 -3.9054 1.9771 15 1 1.5492 -3.5053 2.3679 16 6 2.2162 -4.6693 0.7478 17 7 2.0071 -5.2582 -0.2000 18 6 3.1212 -4.8257 3.0206 19 6 2.1328 -5.8906 3.4208 20 1 1.1490 -5.9089 2.9756 21 6 2.4845 -6.8416 4.3551 22 7 3.6824 -6.8189 4.8976 23 14 1.2592 -8.1611 4.8516 24 1 -0.0080 -7.9672 4.1021 25 1 1.8195 -9.5001 4.5378 26 1 0.9922 -8.0655 6.3094 27 6 2.0621 -0.7686 1.1898 28 8 1.8647 -0.4877 2.3525 29 1 -0.3634 0.5030 -0.8962 30 1 -0.3634 -1.0276 0.0125 31 1 -0.3634 0.5247 0.8836 32 1 0.1173 2.3001 -0.1050 33 1 0.9810 4.6061 -0.0959 34 1 3.4078 5.0114 -0.0007 35 1 4.9707 3.1110 0.0945 36 1 4.1067 0.8053 0.0949 37 1 1.2577 -1.1766 -1.8142 38 1 2.7302 -0.1537 -1.8127 39 1 4.3407 -3.1458 1.1900 40 1 3.7094 -2.2415 2.5871 41 1 4.0095 -5.2949 2.5977 42 1 3.4011 -4.2419 3.8974 43 1 3.9300 -7.4882 5.5546 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179138186.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:55 Heat of formation + Delta-G solvation = -18.102573 kcal Electronic energy + Delta-G solvation = -27424.721955 eV Core-core repulsion = 23627.988154 eV Total energy + Delta-G solvation = -3796.733801 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.37755 -39.55867 -38.51380 -36.86824 -36.04960 -34.99058 -33.65729 -32.02076 -31.33077 -30.24444 -28.69220 -27.05193 -25.24573 -24.10223 -23.06451 -22.58616 -21.90192 -20.95636 -19.45012 -17.80893 -17.35198 -16.95127 -16.44320 -16.18208 -16.03774 -15.29080 -15.14578 -15.09326 -14.57170 -14.31396 -14.30065 -13.97829 -13.75656 -13.49848 -13.35845 -13.06819 -12.74941 -12.62920 -12.57114 -12.19154 -12.13033 -11.97468 -11.76909 -11.51411 -11.34790 -11.19750 -11.12095 -10.90789 -10.79546 -10.53246 -10.38809 -10.00773 -9.92856 -9.51158 -9.23314 -9.20096 -9.04036 -8.48149 -6.12009 -4.15394 0.94452 1.08481 1.47754 2.47541 2.64943 3.27700 3.35735 3.38307 3.40341 3.59449 3.64112 3.88515 3.97310 4.11078 4.23742 4.39052 4.52544 4.67860 4.68377 4.73397 4.80807 5.10587 5.16125 5.19300 5.26148 5.26183 5.33976 5.34488 5.36970 5.43922 5.47146 5.62649 5.69975 5.75460 5.76790 6.14233 6.19218 6.20524 6.20773 6.38413 6.64615 6.81483 7.28457 7.36349 7.45346 7.74703 7.82552 8.18222 8.40808 8.88203 9.50116 10.98953 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.020782 B = 0.003041 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.984984 B = 9205.079702 C = 9483.687602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.055 4.055 3 C -0.066 4.066 4 C -0.105 4.105 5 C -0.118 4.118 6 C -0.118 4.118 7 C -0.114 4.114 8 C -0.112 4.112 9 C -0.149 4.149 10 C 0.520 3.480 11 O -0.464 6.464 12 N -0.573 5.573 13 C 0.104 3.896 14 C -0.005 4.005 15 H 0.105 0.895 16 C 0.230 3.770 17 N -0.453 5.453 18 C 0.034 3.966 19 C -0.526 4.526 20 H 0.057 0.943 21 C 0.063 3.937 22 N -0.890 5.890 23 Si 0.893 3.107 24 H -0.272 1.272 25 H -0.283 1.283 26 H -0.282 1.282 27 C 0.537 3.463 28 O -0.462 6.462 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.131 0.869 33 H 0.124 0.876 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.118 0.882 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.100 0.900 40 H 0.113 0.887 41 H 0.029 0.971 42 H 0.043 0.957 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.860 23.946 -10.677 26.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.059 4.059 3 C -0.067 4.067 4 C -0.123 4.123 5 C -0.136 4.136 6 C -0.136 4.136 7 C -0.132 4.132 8 C -0.130 4.130 9 C -0.189 4.189 10 C 0.308 3.692 11 O -0.334 6.334 12 N -0.316 5.316 13 C -0.017 4.017 14 C -0.028 4.028 15 H 0.123 0.877 16 C -0.087 4.087 17 N -0.129 5.129 18 C -0.004 4.004 19 C -0.564 4.564 20 H 0.075 0.925 21 C -0.139 4.139 22 N -0.528 5.528 23 Si 0.721 3.279 24 H -0.197 1.197 25 H -0.209 1.209 26 H -0.208 1.208 27 C 0.324 3.676 28 O -0.331 6.331 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.149 0.851 33 H 0.142 0.858 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.136 0.864 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.119 0.881 40 H 0.131 0.869 41 H 0.048 0.952 42 H 0.061 0.939 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.822 22.614 -11.654 25.596 hybrid contribution -0.417 -0.724 0.831 1.178 sum -3.239 21.890 -10.823 24.634 Atomic orbital electron populations 1.21857 0.89890 1.03798 1.03897 1.20341 0.98956 0.93096 0.93491 1.19194 0.93564 0.92221 1.01672 1.21133 0.99964 0.91888 0.99271 1.21170 0.95610 0.96747 1.00044 1.21212 0.93576 0.99062 0.99718 1.21117 0.99998 0.92300 0.99745 1.21017 0.94587 0.97508 0.99928 1.22745 1.02128 0.95988 0.97992 1.20758 0.80292 0.86141 0.81982 1.90840 1.40397 1.35828 1.66344 1.46908 1.47589 1.27576 1.09521 1.22109 0.96215 0.88948 0.94478 1.19566 1.00959 0.93376 0.88884 0.87713 1.28933 0.92868 0.93396 0.93507 1.80976 1.09298 1.09872 1.12757 1.19165 0.96488 0.93226 0.91543 1.21109 0.99655 1.12030 1.23628 0.92478 1.24944 0.95330 0.97700 0.95949 1.69944 1.18990 1.35402 1.28495 0.86511 0.81441 0.81637 0.78358 1.19697 1.20924 1.20759 1.20433 0.77095 0.79880 0.90157 1.90784 1.55360 1.68268 1.18677 0.90248 0.91138 0.90342 0.85106 0.85756 0.85946 0.85754 0.86368 0.85868 0.86065 0.88135 0.86853 0.95218 0.93926 0.92763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 7.09 37.16 0.26 -0.80 16 2 C -0.06 -0.53 0.90 -155.87 -0.14 -0.67 16 3 C -0.07 -0.60 4.77 -104.62 -0.50 -1.10 16 4 C -0.10 -0.81 9.04 -39.58 -0.36 -1.17 16 5 C -0.12 -0.83 10.05 -39.58 -0.40 -1.23 16 6 C -0.12 -0.85 10.05 -39.59 -0.40 -1.25 16 7 C -0.11 -0.91 10.05 -39.59 -0.40 -1.31 16 8 C -0.11 -1.04 8.63 -39.59 -0.34 -1.38 16 9 C -0.15 -1.38 6.11 -26.94 -0.16 -1.54 16 10 C 0.52 7.13 7.37 -11.08 -0.08 7.05 16 11 O -0.46 -8.09 16.50 5.61 0.09 -7.99 16 12 N -0.57 -7.99 2.45 -115.34 -0.28 -8.27 16 13 C 0.10 1.61 5.01 -4.05 -0.02 1.59 16 14 C -0.01 -0.10 2.42 -93.41 -0.23 -0.33 16 15 H 0.11 1.95 8.14 -51.93 -0.42 1.53 16 16 C 0.23 4.93 12.14 -20.78 -0.25 4.68 16 17 N -0.45 -10.43 18.47 42.13 0.78 -9.66 16 18 C 0.03 0.81 4.42 -27.88 -0.12 0.68 16 19 C -0.53 -14.18 8.60 -34.44 -0.30 -14.47 16 20 H 0.06 1.54 7.59 -52.49 -0.40 1.14 16 21 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 22 N -0.89 -25.58 13.29 55.43 0.74 -24.84 16 23 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 24 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 27 C 0.54 7.06 6.21 -11.09 -0.07 6.99 16 28 O -0.46 -7.34 17.48 5.60 0.10 -7.24 16 29 H 0.08 0.42 7.50 -51.93 -0.39 0.03 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.62 7.67 -51.93 -0.40 0.22 16 32 H 0.13 0.77 6.01 -52.48 -0.32 0.46 16 33 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 34 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 35 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 36 H 0.12 1.09 7.95 -52.48 -0.42 0.68 16 37 H 0.12 0.95 7.74 -51.93 -0.40 0.55 16 38 H 0.12 0.92 7.40 -51.93 -0.38 0.53 16 39 H 0.10 1.55 7.83 -51.93 -0.41 1.15 16 40 H 0.11 1.62 7.83 -51.93 -0.41 1.22 16 41 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 369.92 15.07 5.57 5.57 Total: -1.00 -33.98 369.92 -7.24 -41.21 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: -5.61 Total: -2.67 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -3.60 Total: -2.61 kcal Atomic # 7 Polarization: -44.00 SS G_CDS: 1.23 Total: -42.77 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: 0.19 Total: -15.23 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.98 -7.24 -41.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179138186.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.112 kcal (2) G-P(sol) polarization free energy of solvation -33.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds