Wall clock time and date at job start Tue Mar 31 2020 14:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50706 * 110.54263 * 2 1 4 4 C 1.38232 * 119.99892 * 357.18923 * 3 2 1 5 5 C 1.38239 * 120.00101 * 179.78281 * 4 3 2 6 6 C 1.38239 * 119.99637 * 0.46789 * 5 4 3 7 7 C 1.38227 * 119.99874 * 359.76449 * 6 5 4 8 8 C 1.38231 * 120.00188 * 177.45970 * 3 2 1 9 9 C 1.54232 * 110.73752 * 237.06730 * 2 1 3 10 10 C 1.51317 * 103.55161 * 241.41804 * 9 2 1 11 11 O 1.21224 * 125.39913 * 180.02562 * 10 9 2 12 12 N 1.33881 * 109.20848 * 0.02562 * 10 9 2 13 13 C 1.46495 * 122.76240 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47202 * 269.99580 * 13 12 10 15 15 H 1.08997 * 109.47533 * 305.00075 * 14 13 12 16 16 C 1.47199 * 109.47141 * 65.00211 * 14 13 12 17 17 N 5.28357 * 95.18119 * 182.17807 * 2 1 3 18 18 C 1.53004 * 109.47280 * 185.00266 * 14 13 12 19 19 C 1.50702 * 109.47209 * 175.00301 * 18 14 13 20 20 H 1.08002 * 119.99638 * 359.97438 * 19 18 14 21 21 C 1.37875 * 120.00176 * 179.97438 * 19 18 14 22 22 N 1.31517 * 119.99774 * 0.02562 * 21 19 18 23 23 Si 1.86791 * 120.00120 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47188 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46976 * 120.00130 * 23 21 19 26 26 H 1.48504 * 109.47270 * 240.00105 * 23 21 19 27 27 C 1.33875 * 114.47294 * 359.97438 * 12 10 9 28 28 O 1.21234 * 125.39588 * 179.97438 * 27 12 10 29 29 H 1.09005 * 109.47141 * 60.69685 * 1 2 3 30 30 H 1.09000 * 109.47571 * 180.69770 * 1 2 3 31 31 H 1.09004 * 109.47309 * 300.70298 * 1 2 3 32 32 H 1.08008 * 119.99918 * 359.97438 * 4 3 2 33 33 H 1.08000 * 120.00171 * 180.25195 * 5 4 3 34 34 H 1.07991 * 119.99477 * 179.78583 * 6 5 4 35 35 H 1.08002 * 120.00293 * 179.97438 * 7 6 5 36 36 H 1.08005 * 120.00077 * 359.97438 * 8 3 2 37 37 H 1.08995 * 110.60264 * 359.93015 * 9 2 1 38 38 H 1.08990 * 110.60962 * 122.90670 * 9 2 1 39 39 H 1.09003 * 109.47323 * 30.00178 * 13 12 10 40 40 H 1.09004 * 109.47330 * 149.99597 * 13 12 10 41 41 H 1.09002 * 109.46952 * 295.00280 * 18 14 13 42 42 H 1.08997 * 109.47076 * 54.99960 * 18 14 13 43 43 H 0.97002 * 120.00105 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0588 1.4112 0.0000 4 6 1.1816 2.4780 -0.0587 5 6 1.6665 3.7726 -0.0542 6 6 3.0290 4.0001 -0.0007 7 6 3.9062 2.9333 0.0532 8 6 3.4212 1.6388 0.0531 9 6 2.0761 -0.7842 -1.2106 10 6 2.8598 -1.9132 -0.5775 11 8 3.4604 -2.7759 -1.1812 12 7 2.7848 -1.8083 0.7551 13 6 3.4406 -2.7528 1.6628 14 6 2.4847 -3.9054 1.9771 15 1 1.5492 -3.5053 2.3679 16 6 2.2162 -4.6693 0.7478 17 7 2.0071 -5.2582 -0.2000 18 6 3.1212 -4.8257 3.0206 19 6 2.1328 -5.8906 3.4208 20 1 1.1490 -5.9089 2.9756 21 6 2.4845 -6.8416 4.3551 22 7 3.6824 -6.8189 4.8976 23 14 1.2592 -8.1611 4.8516 24 1 -0.0080 -7.9672 4.1021 25 1 1.8195 -9.5001 4.5378 26 1 0.9922 -8.0655 6.3094 27 6 2.0621 -0.7686 1.1898 28 8 1.8647 -0.4877 2.3525 29 1 -0.3634 0.5030 -0.8962 30 1 -0.3634 -1.0276 0.0125 31 1 -0.3634 0.5247 0.8836 32 1 0.1173 2.3001 -0.1050 33 1 0.9810 4.6061 -0.0959 34 1 3.4078 5.0114 -0.0007 35 1 4.9707 3.1110 0.0945 36 1 4.1067 0.8053 0.0949 37 1 1.2577 -1.1766 -1.8142 38 1 2.7302 -0.1537 -1.8127 39 1 4.3407 -3.1458 1.1900 40 1 3.7094 -2.2415 2.5871 41 1 4.0095 -5.2949 2.5977 42 1 3.4011 -4.2419 3.8974 43 1 3.9300 -7.4882 5.5546 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179138186.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:54 Heat of formation + Delta-G solvation = -37.129377 kcal Electronic energy + Delta-G solvation = -27425.547019 eV Core-core repulsion = 23627.988154 eV Total energy + Delta-G solvation = -3797.558865 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.38721 -40.30731 -39.58672 -38.45067 -37.09515 -36.27293 -35.42482 -33.70026 -31.94290 -31.05948 -29.62599 -28.52136 -26.32072 -25.48563 -23.89263 -23.77899 -23.18250 -21.82413 -20.44400 -18.94112 -18.45560 -18.44626 -18.02292 -17.27458 -17.12417 -16.61654 -16.16062 -15.91324 -15.84978 -15.41440 -15.23428 -15.05902 -14.87913 -14.67125 -14.41049 -14.27135 -13.99094 -13.95303 -13.54703 -13.38423 -13.36133 -13.15639 -12.97588 -12.77580 -12.72739 -12.68278 -12.51828 -12.21022 -11.97613 -11.87217 -11.77388 -11.45377 -11.40645 -11.06724 -10.79259 -10.60669 -9.79869 -9.66195 -8.24507 -6.33579 0.31779 0.43045 0.52899 1.36606 1.38055 1.40746 1.50113 1.58902 1.85986 1.90686 2.38016 2.73725 2.99633 3.06384 3.12072 3.16159 3.36701 3.51480 3.81602 3.87946 3.97558 4.12254 4.17864 4.19538 4.33390 4.37929 4.48480 4.58006 4.61085 4.62740 4.70982 4.75350 4.79115 4.85933 5.06363 5.16596 5.19743 5.35993 5.48081 5.58993 5.60671 5.65886 5.70673 5.73537 6.10839 6.10865 6.23567 6.64917 6.66245 6.78899 7.35033 8.86752 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.020782 B = 0.003041 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.984984 B = 9205.079702 C = 9483.687602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.043 4.043 3 C -0.080 4.080 4 C -0.107 4.107 5 C -0.121 4.121 6 C -0.121 4.121 7 C -0.125 4.125 8 C -0.131 4.131 9 C -0.136 4.136 10 C 0.516 3.484 11 O -0.507 6.507 12 N -0.576 5.576 13 C 0.109 3.891 14 C 0.006 3.994 15 H 0.114 0.886 16 C 0.240 3.760 17 N -0.480 5.480 18 C 0.041 3.959 19 C -0.541 4.541 20 H 0.053 0.947 21 C 0.012 3.988 22 N -0.921 5.921 23 Si 0.952 3.048 24 H -0.270 1.270 25 H -0.283 1.283 26 H -0.271 1.271 27 C 0.535 3.465 28 O -0.493 6.493 29 H 0.112 0.888 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.151 0.849 33 H 0.149 0.851 34 H 0.144 0.856 35 H 0.135 0.865 36 H 0.109 0.891 37 H 0.146 0.854 38 H 0.142 0.858 39 H 0.098 0.902 40 H 0.126 0.874 41 H 0.007 0.993 42 H 0.040 0.960 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.510 26.109 -11.469 28.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.046 4.046 3 C -0.080 4.080 4 C -0.125 4.125 5 C -0.139 4.139 6 C -0.138 4.138 7 C -0.143 4.143 8 C -0.149 4.149 9 C -0.175 4.175 10 C 0.307 3.693 11 O -0.380 6.380 12 N -0.318 5.318 13 C -0.013 4.013 14 C -0.016 4.016 15 H 0.132 0.868 16 C -0.077 4.077 17 N -0.157 5.157 18 C 0.003 3.997 19 C -0.579 4.579 20 H 0.071 0.929 21 C -0.187 4.187 22 N -0.560 5.560 23 Si 0.777 3.223 24 H -0.194 1.194 25 H -0.209 1.209 26 H -0.196 1.196 27 C 0.325 3.675 28 O -0.364 6.364 29 H 0.130 0.870 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.169 0.831 33 H 0.167 0.833 34 H 0.161 0.839 35 H 0.153 0.847 36 H 0.127 0.873 37 H 0.164 0.836 38 H 0.160 0.840 39 H 0.117 0.883 40 H 0.144 0.856 41 H 0.026 0.974 42 H 0.058 0.942 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.487 24.803 -12.455 28.115 hybrid contribution 0.137 -1.327 1.097 1.727 sum -4.350 23.476 -11.358 26.440 Atomic orbital electron populations 1.21954 0.88129 1.03923 1.05540 1.20343 1.00113 0.92961 0.91200 1.19206 0.93701 0.92089 1.03037 1.21410 1.00821 0.91749 0.98514 1.21530 0.96021 0.97301 0.99015 1.21544 0.93773 0.99831 0.98685 1.21342 1.00969 0.92191 0.99817 1.21099 0.94852 0.97901 1.01056 1.22844 1.02385 0.94244 0.97997 1.21532 0.79620 0.86436 0.81700 1.90820 1.42365 1.37821 1.66961 1.47012 1.47670 1.27474 1.09667 1.21888 0.95257 0.88455 0.95714 1.19454 1.01785 0.93441 0.86932 0.86839 1.29297 0.92014 0.92879 0.93538 1.80963 1.10370 1.10631 1.13752 1.18960 0.95208 0.93166 0.92410 1.21478 1.00039 1.12942 1.23464 0.92918 1.25724 0.96966 0.99829 0.96171 1.70034 1.20478 1.36358 1.29170 0.85593 0.79309 0.78904 0.78478 1.19414 1.20888 1.19607 1.21132 0.76117 0.79444 0.90830 1.90763 1.56429 1.68946 1.20269 0.86952 0.91760 0.90420 0.83124 0.83320 0.83860 0.84708 0.87326 0.83610 0.83974 0.88332 0.85641 0.97427 0.94208 0.92533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 7.09 71.98 0.51 -1.25 16 2 C -0.04 -0.74 0.90 -53.06 -0.05 -0.79 16 3 C -0.08 -1.30 4.77 -19.87 -0.09 -1.39 16 4 C -0.11 -1.34 9.04 22.27 0.20 -1.14 16 5 C -0.12 -1.33 10.05 22.27 0.22 -1.10 16 6 C -0.12 -1.43 10.05 22.27 0.22 -1.20 16 7 C -0.13 -1.83 10.05 22.27 0.22 -1.60 16 8 C -0.13 -2.28 8.63 22.27 0.19 -2.09 16 9 C -0.14 -2.24 6.11 30.46 0.19 -2.05 16 10 C 0.52 13.93 7.37 87.99 0.65 14.58 16 11 O -0.51 -17.83 16.50 -2.86 -0.05 -17.87 16 12 N -0.58 -15.97 2.45 -756.66 -1.86 -17.83 16 13 C 0.11 3.45 5.01 86.38 0.43 3.89 16 14 C 0.01 0.24 2.42 -12.60 -0.03 0.21 16 15 H 0.11 4.23 8.14 -2.39 -0.02 4.21 16 16 C 0.24 10.38 12.14 89.45 1.09 11.46 16 17 N -0.48 -22.36 18.47 20.00 0.37 -21.99 16 18 C 0.04 1.98 4.42 29.85 0.13 2.11 16 19 C -0.54 -29.48 8.60 25.60 0.22 -29.26 16 20 H 0.05 2.86 7.59 -2.91 -0.02 2.83 16 21 C 0.01 0.69 5.46 84.65 0.46 1.16 16 22 N -0.92 -53.54 13.29 21.45 0.28 -53.26 16 23 Si 0.95 44.15 29.54 68.60 2.03 46.18 16 24 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 25 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 26 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 27 C 0.54 13.71 6.21 87.99 0.55 14.26 16 28 O -0.49 -15.52 17.48 -2.89 -0.05 -15.57 16 29 H 0.11 0.70 7.50 -2.38 -0.02 0.68 16 30 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.08 1.03 7.67 -2.38 -0.02 1.01 16 32 H 0.15 1.20 6.01 -2.91 -0.02 1.18 16 33 H 0.15 0.86 8.06 -2.91 -0.02 0.84 16 34 H 0.14 1.02 8.06 -2.91 -0.02 1.00 16 35 H 0.14 1.55 8.06 -2.91 -0.02 1.52 16 36 H 0.11 2.00 7.95 -2.91 -0.02 1.98 16 37 H 0.15 1.81 7.74 -2.39 -0.02 1.80 16 38 H 0.14 1.81 7.40 -2.39 -0.02 1.80 16 39 H 0.10 3.15 7.83 -2.39 -0.02 3.14 16 40 H 0.13 3.65 7.83 -2.39 -0.02 3.63 16 41 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 42 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 Total: -1.00 -74.05 369.92 6.87 -67.18 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: 1.03 Total: 7.37 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: 5.12 Total: 5.79 kcal Atomic # 7 Polarization: -91.87 SS G_CDS: -1.20 Total: -93.08 kcal Atomic # 8 Polarization: -33.35 SS G_CDS: -0.10 Total: -33.45 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -74.05 6.87 -67.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179138186.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.051 kcal (2) G-P(sol) polarization free energy of solvation -74.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds