Wall clock time and date at job start Tue Mar 31 2020 14:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.47282 * 2 1 4 4 C 1.38622 * 120.75789 * 270.29671 * 3 2 1 5 5 C 1.38561 * 119.35512 * 180.27416 * 4 3 2 6 6 N 1.31528 * 120.89843 * 359.69984 * 5 4 3 7 7 C 1.32709 * 121.64641 * 0.02562 * 6 5 4 8 8 C 1.48171 * 119.72542 * 179.97438 * 7 6 5 9 9 O 1.21515 * 120.00096 * 179.97438 * 8 7 6 10 10 N 1.34772 * 119.99779 * 359.97438 * 8 7 6 11 11 C 1.46496 * 120.00056 * 179.97438 * 10 8 7 12 12 C 1.50706 * 109.47481 * 180.02562 * 11 10 8 13 13 C 1.38302 * 119.92758 * 269.72917 * 12 11 10 14 14 C 1.38097 * 120.06537 * 179.72196 * 13 12 11 15 15 C 1.38888 * 119.92816 * 0.57279 * 14 13 12 16 16 O 1.35748 * 120.06732 * 179.68509 * 15 14 13 17 17 C 1.34831 * 117.00302 * 174.48485 * 16 15 14 18 18 H 1.07999 * 119.99408 * 5.05505 * 17 16 15 19 19 C 1.38645 * 120.00505 * 185.05378 * 17 16 15 20 20 N 1.31558 * 120.00234 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99811 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47323 * 89.99870 * 21 19 17 23 23 H 1.48506 * 109.46962 * 210.00156 * 21 19 17 24 24 H 1.48496 * 109.47211 * 329.99753 * 21 19 17 25 25 C 1.38877 * 119.86385 * 359.69612 * 15 14 13 26 26 C 1.38097 * 119.92877 * 0.02562 * 25 15 14 27 27 C 1.38593 * 120.75471 * 89.99788 * 3 2 1 28 28 H 1.09004 * 109.46905 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47202 * 299.99832 * 1 2 3 30 30 H 1.08991 * 109.47170 * 60.00384 * 1 2 3 31 31 H 1.08998 * 109.47207 * 239.99703 * 2 1 3 32 32 H 1.09004 * 109.47347 * 119.99751 * 2 1 3 33 33 H 1.08004 * 120.32628 * 0.02562 * 4 3 2 34 34 H 1.08003 * 119.55341 * 179.71832 * 5 4 3 35 35 H 0.97000 * 120.00041 * 359.97438 * 10 8 7 36 36 H 1.09003 * 109.47488 * 300.00006 * 11 10 8 37 37 H 1.09005 * 109.47128 * 60.00415 * 11 10 8 38 38 H 1.07999 * 119.96733 * 359.97438 * 13 12 11 39 39 H 1.07993 * 120.03950 * 180.27270 * 14 13 12 40 40 H 0.96998 * 120.00076 * 179.97438 * 20 19 17 41 41 H 1.08000 * 120.03583 * 179.97438 * 25 15 14 42 42 H 1.07997 * 119.96737 * 179.97438 * 26 25 15 43 43 H 1.07997 * 120.47086 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2629 2.0912 -1.1912 5 6 2.7302 3.3952 -1.1573 6 7 2.9513 4.0039 -0.0125 7 6 2.7383 3.3999 1.1498 8 6 3.0022 4.1258 2.4142 9 8 2.8085 3.5777 3.4813 10 7 3.4572 5.3940 2.3808 11 6 3.7176 6.1119 3.6310 12 6 4.2143 7.5002 3.3190 13 6 5.5704 7.7325 3.1789 14 6 6.0283 9.0023 2.8874 15 6 5.1262 10.0489 2.7467 16 8 5.5736 11.2995 2.4665 17 6 4.6415 12.2446 2.2301 18 1 3.5937 12.0110 2.3483 19 6 5.0279 13.5162 1.8352 20 7 4.1183 14.4381 1.6041 21 14 6.8403 13.9204 1.6314 22 1 7.2584 13.6300 0.2365 23 1 7.0627 15.3589 1.9257 24 1 7.6405 13.0937 2.5703 25 6 3.7654 9.8134 2.8935 26 6 3.3134 8.5402 3.1793 27 6 2.2686 2.0890 1.1910 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 2.0838 1.6006 -2.1366 34 1 2.9153 3.9190 -2.0835 35 1 3.6122 5.8314 1.5290 36 1 2.7970 6.1777 4.2109 37 1 4.4724 5.5765 4.2070 38 1 6.2718 6.9193 3.2935 39 1 7.0870 9.1824 2.7737 40 1 4.3888 15.3279 1.3282 41 1 3.0615 10.6253 2.7851 42 1 2.2554 8.3564 3.2941 43 1 2.0948 1.5990 2.1376 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181838782.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:09 Heat of formation + Delta-G solvation = -12.594452 kcal Electronic energy + Delta-G solvation = -25395.900118 eV Core-core repulsion = 21599.405167 eV Total energy + Delta-G solvation = -3796.494951 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.89808 -39.47235 -38.92936 -37.00955 -35.46344 -34.45469 -32.46648 -31.80506 -30.81116 -30.36449 -29.95298 -26.39586 -25.23306 -24.77942 -23.73020 -22.43123 -22.15786 -20.59290 -20.35315 -18.06723 -17.90371 -17.32753 -17.08932 -16.31726 -15.63884 -15.55088 -15.32407 -14.90286 -14.63346 -14.41141 -14.12137 -14.09720 -13.90422 -13.80719 -13.74149 -13.34826 -12.95380 -12.76965 -12.66805 -12.36276 -12.26042 -11.98535 -11.96270 -11.47845 -11.47346 -10.97322 -10.83340 -10.75582 -10.41044 -10.21005 -9.95157 -9.76348 -9.52755 -9.46425 -8.98220 -8.93510 -8.35254 -7.46090 -6.48202 -4.15075 0.38714 0.86375 1.96711 2.05531 2.60897 3.15887 3.20365 3.23191 3.36321 3.62816 3.93939 4.16791 4.18274 4.32445 4.47812 4.62932 4.69831 4.76754 4.80527 4.83408 4.99228 5.04002 5.13750 5.18731 5.35032 5.35662 5.41074 5.46448 5.57799 5.58782 5.72659 5.73991 5.83881 5.92382 6.05466 6.25943 6.26706 6.44087 6.48815 6.70211 6.92059 7.14538 7.20999 7.36190 7.52020 7.66265 7.72969 7.96151 8.15404 8.86434 9.47266 10.58966 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.022335 B = 0.002066 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.347483 B =13552.049928 C =14064.038637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.086 4.086 3 C -0.047 4.047 4 C -0.153 4.153 5 C 0.102 3.898 6 N -0.460 5.460 7 C 0.085 3.915 8 C 0.565 3.435 9 O -0.541 6.541 10 N -0.699 5.699 11 C 0.175 3.825 12 C -0.206 4.206 13 C -0.055 4.055 14 C -0.195 4.195 15 C 0.167 3.833 16 O -0.213 6.213 17 C -0.391 4.391 18 H 0.108 0.892 19 C 0.064 3.936 20 N -0.876 5.876 21 Si 0.906 3.094 22 H -0.273 1.273 23 H -0.281 1.281 24 H -0.259 1.259 25 C -0.224 4.224 26 C -0.051 4.051 27 C -0.112 4.112 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.139 0.861 34 H 0.164 0.836 35 H 0.413 0.587 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.115 0.885 39 H 0.119 0.881 40 H 0.280 0.720 41 H 0.135 0.865 42 H 0.111 0.889 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.106 -26.196 -5.090 27.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.124 4.124 3 C -0.055 4.055 4 C -0.173 4.173 5 C -0.057 4.057 6 N -0.172 5.172 7 C -0.053 4.053 8 C 0.350 3.650 9 O -0.419 6.419 10 N -0.350 5.350 11 C 0.053 3.947 12 C -0.207 4.207 13 C -0.074 4.074 14 C -0.214 4.214 15 C 0.114 3.886 16 O -0.117 6.117 17 C -0.466 4.466 18 H 0.125 0.875 19 C -0.140 4.140 20 N -0.513 5.513 21 Si 0.731 3.269 22 H -0.198 1.198 23 H -0.207 1.207 24 H -0.183 1.183 25 C -0.243 4.243 26 C -0.070 4.070 27 C -0.133 4.133 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.156 0.844 34 H 0.181 0.819 35 H 0.250 0.750 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.133 0.867 39 H 0.137 0.863 40 H 0.091 0.909 41 H 0.152 0.848 42 H 0.129 0.871 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -3.743 -25.330 -4.341 25.971 hybrid contribution 0.310 -0.160 -0.685 0.769 sum -3.434 -25.490 -5.026 26.207 Atomic orbital electron populations 1.21759 0.94004 1.02267 1.02570 1.20601 0.96696 0.91391 1.03688 1.20354 0.95697 0.96805 0.92654 1.22265 0.99917 0.96250 0.98852 1.22827 0.94754 0.92095 0.96009 1.67588 1.13987 1.37574 0.98012 1.21231 0.99118 0.92603 0.92376 1.17918 0.77825 0.81997 0.87286 1.90771 1.53161 1.67923 1.30032 1.46197 1.64592 1.12951 1.11256 1.20086 1.00488 0.89030 0.85062 1.19251 0.93774 0.93963 1.13741 1.20534 0.94368 0.95516 0.96962 1.20206 0.98863 0.91434 1.10897 1.19183 0.92161 0.85032 0.92217 1.83573 1.36643 1.14747 1.76771 1.20786 0.89334 0.89634 1.46879 0.87495 1.24487 0.99924 0.94245 0.95317 1.69644 1.33734 1.04086 1.43819 0.86172 0.83531 0.77627 0.79533 1.19812 1.20708 1.18328 1.21274 0.95798 0.97849 1.09361 1.20699 0.98270 0.92030 0.95985 1.22008 0.97452 0.94315 0.99543 0.91853 0.92220 0.92364 0.90296 0.90219 0.84353 0.81903 0.75016 0.91151 0.91157 0.86748 0.86344 0.90933 0.84769 0.87077 0.83565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.89 37.16 0.37 -0.37 16 2 C -0.09 -0.45 6.11 -27.88 -0.17 -0.63 16 3 C -0.05 -0.37 5.17 -104.35 -0.54 -0.91 16 4 C -0.15 -1.07 9.82 -39.32 -0.39 -1.46 16 5 C 0.10 0.88 11.18 -17.56 -0.20 0.69 16 6 N -0.46 -5.35 9.54 -9.80 -0.09 -5.44 16 7 C 0.08 1.05 6.75 -83.01 -0.56 0.49 16 8 C 0.57 8.07 7.81 -12.18 -0.10 7.98 16 9 O -0.54 -8.93 16.32 5.35 0.09 -8.84 16 10 N -0.70 -9.61 5.54 -62.32 -0.35 -9.96 16 11 C 0.18 2.47 5.80 -5.19 -0.03 2.44 16 12 C -0.21 -3.27 5.25 -104.57 -0.55 -3.82 16 13 C -0.05 -0.89 9.69 -39.61 -0.38 -1.28 16 14 C -0.19 -3.70 9.99 -39.39 -0.39 -4.10 16 15 C 0.17 3.73 6.65 -39.10 -0.26 3.47 16 16 O -0.21 -5.48 8.59 0.05 0.00 -5.48 16 17 C -0.39 -10.78 9.95 30.88 0.31 -10.47 16 18 H 0.11 3.01 5.44 -52.49 -0.29 2.72 16 19 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 20 N -0.88 -24.86 13.96 55.48 0.77 -24.08 16 21 Si 0.91 21.28 28.62 -169.99 -4.86 16.41 16 22 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 24 H -0.26 -6.11 7.11 56.52 0.40 -5.71 16 25 C -0.22 -4.65 9.17 -39.40 -0.36 -5.01 16 26 C -0.05 -0.89 9.69 -39.61 -0.38 -1.27 16 27 C -0.11 -1.15 9.34 -39.05 -0.36 -1.52 16 28 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.08 0.31 8.10 -51.93 -0.42 -0.11 16 32 H 0.08 0.39 8.10 -51.93 -0.42 -0.03 16 33 H 0.14 0.57 8.06 -52.48 -0.42 0.15 16 34 H 0.16 0.97 8.06 -52.48 -0.42 0.55 16 35 H 0.41 5.59 7.79 -40.82 -0.32 5.27 16 36 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 37 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 38 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 39 H 0.12 2.10 8.06 -52.49 -0.42 1.68 16 40 H 0.28 7.35 8.31 -40.82 -0.34 7.01 16 41 H 0.13 2.95 5.64 -52.49 -0.30 2.65 16 42 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 43 H 0.15 1.45 7.64 -52.49 -0.40 1.05 16 LS Contribution 373.55 15.07 5.63 5.63 Total: -1.00 -30.97 373.55 -8.41 -39.37 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -5.50 Total: 6.50 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: -4.10 Total: -14.10 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: 0.34 Total: -39.48 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: 0.09 Total: -14.33 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.86 Total: 16.41 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.97 -8.41 -39.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181838782.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.778 kcal (2) G-P(sol) polarization free energy of solvation -30.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds