Wall clock time and date at job start Tue Mar 31 2020 14:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.47282 * 2 1 4 4 C 1.38622 * 120.75789 * 270.29671 * 3 2 1 5 5 C 1.38561 * 119.35512 * 180.27416 * 4 3 2 6 6 N 1.31528 * 120.89843 * 359.69984 * 5 4 3 7 7 C 1.32709 * 121.64641 * 0.02562 * 6 5 4 8 8 C 1.48171 * 119.72542 * 179.97438 * 7 6 5 9 9 O 1.21515 * 120.00096 * 179.97438 * 8 7 6 10 10 N 1.34772 * 119.99779 * 359.97438 * 8 7 6 11 11 C 1.46496 * 120.00056 * 179.97438 * 10 8 7 12 12 C 1.50706 * 109.47481 * 180.02562 * 11 10 8 13 13 C 1.38302 * 119.92758 * 269.72917 * 12 11 10 14 14 C 1.38097 * 120.06537 * 179.72196 * 13 12 11 15 15 C 1.38888 * 119.92816 * 0.57279 * 14 13 12 16 16 O 1.35748 * 120.06732 * 179.68509 * 15 14 13 17 17 C 1.34831 * 117.00302 * 174.48485 * 16 15 14 18 18 H 1.07999 * 119.99408 * 5.05505 * 17 16 15 19 19 C 1.38645 * 120.00505 * 185.05378 * 17 16 15 20 20 N 1.31558 * 120.00234 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99811 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47323 * 89.99870 * 21 19 17 23 23 H 1.48506 * 109.46962 * 210.00156 * 21 19 17 24 24 H 1.48496 * 109.47211 * 329.99753 * 21 19 17 25 25 C 1.38877 * 119.86385 * 359.69612 * 15 14 13 26 26 C 1.38097 * 119.92877 * 0.02562 * 25 15 14 27 27 C 1.38593 * 120.75471 * 89.99788 * 3 2 1 28 28 H 1.09004 * 109.46905 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47202 * 299.99832 * 1 2 3 30 30 H 1.08991 * 109.47170 * 60.00384 * 1 2 3 31 31 H 1.08998 * 109.47207 * 239.99703 * 2 1 3 32 32 H 1.09004 * 109.47347 * 119.99751 * 2 1 3 33 33 H 1.08004 * 120.32628 * 0.02562 * 4 3 2 34 34 H 1.08003 * 119.55341 * 179.71832 * 5 4 3 35 35 H 0.97000 * 120.00041 * 359.97438 * 10 8 7 36 36 H 1.09003 * 109.47488 * 300.00006 * 11 10 8 37 37 H 1.09005 * 109.47128 * 60.00415 * 11 10 8 38 38 H 1.07999 * 119.96733 * 359.97438 * 13 12 11 39 39 H 1.07993 * 120.03950 * 180.27270 * 14 13 12 40 40 H 0.96998 * 120.00076 * 179.97438 * 20 19 17 41 41 H 1.08000 * 120.03583 * 179.97438 * 25 15 14 42 42 H 1.07997 * 119.96737 * 179.97438 * 26 25 15 43 43 H 1.07997 * 120.47086 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2629 2.0912 -1.1912 5 6 2.7302 3.3952 -1.1573 6 7 2.9513 4.0039 -0.0125 7 6 2.7383 3.3999 1.1498 8 6 3.0022 4.1258 2.4142 9 8 2.8085 3.5777 3.4813 10 7 3.4572 5.3940 2.3808 11 6 3.7176 6.1119 3.6310 12 6 4.2143 7.5002 3.3190 13 6 5.5704 7.7325 3.1789 14 6 6.0283 9.0023 2.8874 15 6 5.1262 10.0489 2.7467 16 8 5.5736 11.2995 2.4665 17 6 4.6415 12.2446 2.2301 18 1 3.5937 12.0110 2.3483 19 6 5.0279 13.5162 1.8352 20 7 4.1183 14.4381 1.6041 21 14 6.8403 13.9204 1.6314 22 1 7.2584 13.6300 0.2365 23 1 7.0627 15.3589 1.9257 24 1 7.6405 13.0937 2.5703 25 6 3.7654 9.8134 2.8935 26 6 3.3134 8.5402 3.1793 27 6 2.2686 2.0890 1.1910 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 2.0838 1.6006 -2.1366 34 1 2.9153 3.9190 -2.0835 35 1 3.6122 5.8314 1.5290 36 1 2.7970 6.1777 4.2109 37 1 4.4724 5.5765 4.2070 38 1 6.2718 6.9193 3.2935 39 1 7.0870 9.1824 2.7737 40 1 4.3888 15.3279 1.3282 41 1 3.0615 10.6253 2.7851 42 1 2.2554 8.3564 3.2941 43 1 2.0948 1.5990 2.1376 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181838782.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:08 Heat of formation + Delta-G solvation = -31.449644 kcal Electronic energy + Delta-G solvation = -25396.717740 eV Core-core repulsion = 21599.405167 eV Total energy + Delta-G solvation = -3797.312573 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.72042 -40.98451 -40.09056 -38.60244 -36.11344 -35.63589 -34.45117 -32.62761 -31.89890 -31.55188 -31.13305 -27.93548 -26.62406 -25.54305 -24.68432 -23.73861 -23.10605 -22.09247 -21.30232 -19.86154 -19.20897 -18.79449 -17.91952 -17.01387 -16.83361 -16.64266 -16.48197 -16.20790 -15.92353 -15.70792 -15.61545 -15.20419 -15.01585 -14.72719 -14.56966 -14.50944 -14.35914 -14.24654 -14.07403 -13.45528 -13.28298 -13.12737 -12.99134 -12.61432 -12.48554 -12.38060 -12.35701 -11.94928 -11.88610 -11.46063 -11.32039 -10.92070 -10.60624 -10.54294 -10.34131 -10.04394 -9.85576 -9.12142 -8.51263 -6.24483 -0.37569 0.20427 0.45857 0.52689 1.32076 1.35572 1.52150 1.66894 2.11459 2.27347 2.76268 2.83480 3.01467 3.10637 3.20401 3.61817 3.74874 3.81663 3.98211 4.01350 4.04058 4.11599 4.26789 4.39805 4.44221 4.49080 4.51978 4.62307 4.67275 4.75974 4.78152 4.92648 4.94926 4.99632 5.09517 5.19688 5.31081 5.31903 5.35365 5.37513 5.51746 5.63869 5.68074 5.76837 5.86532 6.16918 6.37913 6.78993 6.82624 7.08242 7.54952 8.59954 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.022335 B = 0.002066 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.347483 B =13552.049928 C =14064.038637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 C -0.047 4.047 4 C -0.137 4.137 5 C 0.093 3.907 6 N -0.484 5.484 7 C 0.057 3.943 8 C 0.565 3.435 9 O -0.570 6.570 10 N -0.698 5.698 11 C 0.179 3.821 12 C -0.176 4.176 13 C -0.045 4.045 14 C -0.191 4.191 15 C 0.130 3.870 16 O -0.241 6.241 17 C -0.400 4.400 18 H 0.082 0.918 19 C 0.010 3.990 20 N -0.921 5.921 21 Si 0.971 3.029 22 H -0.265 1.265 23 H -0.268 1.268 24 H -0.262 1.262 25 C -0.238 4.238 26 C -0.050 4.050 27 C -0.120 4.120 28 H 0.076 0.924 29 H 0.044 0.956 30 H 0.060 0.940 31 H 0.101 0.899 32 H 0.081 0.919 33 H 0.176 0.824 34 H 0.189 0.811 35 H 0.415 0.585 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.154 0.846 39 H 0.133 0.867 40 H 0.285 0.715 41 H 0.111 0.889 42 H 0.133 0.867 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.209 -29.812 -6.269 30.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.121 4.121 3 C -0.055 4.055 4 C -0.156 4.156 5 C -0.067 4.067 6 N -0.196 5.196 7 C -0.080 4.080 8 C 0.351 3.649 9 O -0.450 6.450 10 N -0.348 5.348 11 C 0.057 3.943 12 C -0.177 4.177 13 C -0.063 4.063 14 C -0.210 4.210 15 C 0.081 3.919 16 O -0.148 6.148 17 C -0.477 4.477 18 H 0.100 0.900 19 C -0.188 4.188 20 N -0.561 5.561 21 Si 0.793 3.207 22 H -0.190 1.190 23 H -0.193 1.193 24 H -0.186 1.186 25 C -0.257 4.257 26 C -0.069 4.069 27 C -0.141 4.141 28 H 0.095 0.905 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.119 0.881 32 H 0.100 0.900 33 H 0.193 0.807 34 H 0.206 0.794 35 H 0.252 0.748 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.171 0.829 39 H 0.151 0.849 40 H 0.095 0.905 41 H 0.128 0.872 42 H 0.151 0.849 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.855 -28.989 -5.511 29.646 hybrid contribution -0.108 0.533 -0.314 0.628 sum -2.963 -28.457 -5.825 29.197 Atomic orbital electron populations 1.21759 0.93788 1.03012 1.01979 1.20674 0.96719 0.89803 1.04918 1.20688 0.94833 0.97941 0.92020 1.22673 0.97458 0.95466 1.00040 1.23371 0.94302 0.93075 0.95902 1.67521 1.15010 1.38489 0.98571 1.20981 1.01751 0.93378 0.91896 1.18234 0.76957 0.81818 0.87848 1.90745 1.54445 1.68501 1.31278 1.46070 1.64699 1.12998 1.11007 1.20052 1.01075 0.87696 0.85485 1.19521 0.93594 0.94490 1.10093 1.20949 0.95120 0.95334 0.94919 1.20514 0.99229 0.91397 1.09847 1.19727 0.93509 0.84942 0.93757 1.83521 1.36010 1.15716 1.79540 1.20709 0.88914 0.90710 1.47322 0.90011 1.25297 1.04270 0.94026 0.95254 1.69728 1.35633 1.04709 1.46039 0.85210 0.78138 0.77796 0.79538 1.18994 1.19291 1.18630 1.21260 0.95212 0.98755 1.10459 1.20914 0.99856 0.90924 0.95193 1.22087 0.97625 0.93838 1.00538 0.90484 0.93675 0.92103 0.88093 0.90025 0.80696 0.79417 0.74808 0.90807 0.89869 0.82881 0.84911 0.90523 0.87156 0.84947 0.84071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.89 71.98 0.71 -0.39 16 2 C -0.08 -0.63 6.11 29.85 0.18 -0.45 16 3 C -0.05 -0.61 5.17 -19.69 -0.10 -0.72 16 4 C -0.14 -1.44 9.82 22.44 0.22 -1.22 16 5 C 0.09 1.36 11.18 84.82 0.95 2.31 16 6 N -0.48 -10.54 9.54 -184.90 -1.76 -12.30 16 7 C 0.06 1.35 6.75 41.91 0.28 1.63 16 8 C 0.57 15.65 7.81 86.88 0.68 16.33 16 9 O -0.57 -18.47 16.32 -3.76 -0.06 -18.53 16 10 N -0.70 -18.00 5.54 -469.39 -2.60 -20.60 16 11 C 0.18 4.59 5.80 85.64 0.50 5.08 16 12 C -0.18 -5.17 5.25 -19.83 -0.10 -5.28 16 13 C -0.04 -1.32 9.69 22.25 0.22 -1.11 16 14 C -0.19 -6.98 9.99 22.39 0.22 -6.76 16 15 C 0.13 5.94 6.65 22.58 0.15 6.09 16 16 O -0.24 -12.85 8.59 -22.73 -0.20 -13.05 16 17 C -0.40 -23.31 9.95 67.92 0.68 -22.64 16 18 H 0.08 4.99 5.44 -2.91 -0.02 4.98 16 19 C 0.01 0.59 5.49 84.83 0.47 1.06 16 20 N -0.92 -54.58 13.96 21.61 0.30 -54.28 16 21 Si 0.97 44.90 28.62 68.60 1.96 46.86 16 22 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 23 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 24 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 25 C -0.24 -10.21 9.17 22.39 0.21 -10.00 16 26 C -0.05 -1.71 9.69 22.25 0.22 -1.49 16 27 C -0.12 -2.33 9.34 22.61 0.21 -2.12 16 28 H 0.08 0.38 8.14 -2.38 -0.02 0.36 16 29 H 0.04 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.10 0.36 8.10 -2.39 -0.02 0.34 16 32 H 0.08 0.61 8.10 -2.38 -0.02 0.59 16 33 H 0.18 0.55 8.06 -2.91 -0.02 0.53 16 34 H 0.19 1.64 8.06 -2.91 -0.02 1.61 16 35 H 0.42 10.54 7.79 -92.71 -0.72 9.82 16 36 H 0.07 1.90 8.08 -2.39 -0.02 1.88 16 37 H 0.08 2.00 8.08 -2.38 -0.02 1.98 16 38 H 0.15 3.44 8.06 -2.91 -0.02 3.41 16 39 H 0.13 4.45 8.06 -2.91 -0.02 4.43 16 40 H 0.29 15.49 8.31 -92.71 -0.77 14.72 16 41 H 0.11 5.24 5.64 -2.91 -0.02 5.23 16 42 H 0.13 3.91 8.06 -2.91 -0.02 3.89 16 43 H 0.14 2.77 7.64 -2.91 -0.02 2.75 16 Total: -1.00 -71.19 373.55 3.64 -67.54 By element: Atomic # 1 Polarization: 23.70 SS G_CDS: 0.32 Total: 24.02 kcal Atomic # 6 Polarization: -25.35 SS G_CDS: 5.68 Total: -19.68 kcal Atomic # 7 Polarization: -83.11 SS G_CDS: -4.06 Total: -87.17 kcal Atomic # 8 Polarization: -31.32 SS G_CDS: -0.26 Total: -31.58 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.96 Total: 46.86 kcal Total: -71.19 3.64 -67.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181838782.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.092 kcal (2) G-P(sol) polarization free energy of solvation -71.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds