Wall clock time and date at job start Tue Mar 31 2020 15:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46728 * 2 1 4 4 H 1.08996 * 109.47159 * 55.00316 * 3 2 1 5 5 C 1.50704 * 109.46874 * 174.99813 * 3 2 1 6 6 H 1.07999 * 119.99906 * 120.27225 * 5 3 2 7 7 C 1.37882 * 119.99878 * 300.00235 * 5 3 2 8 8 N 1.31510 * 119.99841 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99842 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47287 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47166 * 119.99553 * 9 7 5 12 12 H 1.48503 * 109.46932 * 239.99790 * 9 7 5 13 13 N 1.46503 * 109.47171 * 294.99280 * 3 2 1 14 14 C 1.34773 * 119.99402 * 85.00522 * 13 3 2 15 15 O 1.21586 * 120.00369 * 0.02562 * 14 13 3 16 16 C 1.47605 * 120.00057 * 179.97438 * 14 13 3 17 17 C 1.39748 * 120.08148 * 359.72614 * 16 14 13 18 18 C 1.37690 * 119.90713 * 179.69980 * 17 16 14 19 19 C 1.39018 * 120.08820 * 0.59581 * 18 17 16 20 20 O 1.35702 * 119.91387 * 179.70015 * 19 18 17 21 21 C 1.35889 * 117.99922 * 247.47658 * 20 19 18 22 22 C 1.39172 * 120.47443 * 186.11619 * 21 20 19 23 23 C 1.38529 * 118.37012 * 179.97438 * 22 21 20 24 24 C 1.38258 * 119.22583 * 359.97438 * 23 22 21 25 25 N 1.31857 * 120.88892 * 0.02562 * 24 23 22 26 26 C 1.31836 * 121.78516 * 359.68676 * 25 24 23 27 27 C 1.39021 * 120.17369 * 359.67791 * 19 18 17 28 28 C 1.37690 * 120.08338 * 0.02680 * 27 19 18 29 29 H 1.08993 * 109.47174 * 300.00427 * 1 2 3 30 30 H 1.09002 * 109.47055 * 60.00320 * 1 2 3 31 31 H 1.08999 * 109.46861 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46863 * 239.99992 * 2 1 3 33 33 H 1.09002 * 109.47055 * 119.99680 * 2 1 3 34 34 H 0.97007 * 119.99395 * 180.02562 * 8 7 5 35 35 H 0.96996 * 120.00022 * 265.00418 * 13 3 2 36 36 H 1.08001 * 120.04040 * 359.97438 * 17 16 14 37 37 H 1.07998 * 119.95247 * 180.27778 * 18 17 16 38 38 H 1.07999 * 120.80967 * 359.97438 * 22 21 20 39 39 H 1.08005 * 120.38106 * 180.02562 * 23 22 21 40 40 H 1.07995 * 119.55186 * 179.97438 * 24 23 22 41 41 H 1.07998 * 119.65691 * 180.31199 * 26 25 24 42 42 H 1.07999 * 119.95687 * 179.97438 * 27 19 18 43 43 H 1.08003 * 120.04153 * 180.02562 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1470 1.8929 -0.6501 7 6 4.1432 0.8784 1.2281 8 7 3.4061 0.3375 2.1733 9 14 6.0049 0.8814 1.3820 10 1 6.5987 1.5464 0.1944 11 1 6.3989 1.6169 2.6104 12 1 6.4970 -0.5174 1.4631 13 7 1.6525 2.0975 -1.2519 14 6 0.4352 2.6643 -1.3670 15 8 -0.3412 2.6326 -0.4319 16 6 0.0449 3.3247 -2.6281 17 6 0.9384 3.3682 -3.7018 18 6 0.5683 3.9797 -4.8786 19 6 -0.6876 4.5642 -4.9953 20 8 -1.0465 5.1713 -6.1547 21 6 -1.2129 6.5199 -6.1437 22 6 -1.7021 7.1799 -7.2671 23 6 -1.8551 8.5554 -7.2078 24 6 -1.5202 9.2224 -6.0440 25 7 -1.0591 8.5669 -4.9969 26 6 -0.9040 7.2578 -5.0102 27 6 -1.5771 4.5281 -3.9275 28 6 -1.2167 3.9131 -2.7495 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8292 -0.0603 2.9503 35 1 2.2720 2.1231 -1.9978 36 1 1.9162 2.9188 -3.6100 37 1 1.2565 4.0097 -5.7103 38 1 -1.9562 6.6330 -8.1630 39 1 -2.2325 9.1003 -8.0606 40 1 -1.6370 10.2948 -5.9921 41 1 -0.5282 6.7552 -4.1313 42 1 -2.5518 4.9837 -4.0218 43 1 -1.9084 3.8851 -1.9205 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183879655.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:35 Heat of formation + Delta-G solvation = -3.054694 kcal Electronic energy + Delta-G solvation = -26340.650490 eV Core-core repulsion = 22544.569214 eV Total energy + Delta-G solvation = -3796.081276 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.48412 -39.91550 -39.05148 -37.37031 -35.10699 -32.86622 -32.55486 -31.42801 -31.33898 -30.66168 -29.78016 -27.01203 -24.76363 -24.00345 -23.30733 -22.81085 -22.49931 -20.52744 -19.53383 -19.02343 -18.01536 -17.50132 -17.01821 -16.48276 -15.97752 -15.37299 -15.22185 -14.90010 -14.72177 -14.52908 -14.38161 -14.18085 -13.74733 -13.53964 -13.33748 -13.01184 -12.85916 -12.68551 -12.66318 -12.26180 -11.91265 -11.52760 -11.28834 -11.17484 -10.99377 -10.87609 -10.34445 -10.22346 -10.15807 -9.88492 -9.67117 -9.27399 -9.20874 -9.10720 -9.07801 -8.63134 -8.54063 -7.89223 -6.15903 -4.25508 0.51785 0.74683 0.89676 1.14802 2.59353 3.18566 3.21695 3.29857 3.32034 3.42014 3.94431 4.01475 4.17718 4.29483 4.33590 4.48252 4.61523 4.63078 4.66101 4.91152 5.06183 5.15429 5.15717 5.19689 5.34444 5.40059 5.59197 5.67228 5.77791 6.01963 6.06133 6.17546 6.28069 6.36710 6.43093 6.48257 6.62930 7.01075 7.12830 7.16475 7.31096 7.37546 7.58016 7.59467 7.68315 7.85579 8.13768 8.57303 8.72360 9.02171 9.41745 10.89466 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.020519 B = 0.002454 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.236579 B =11405.176201 C =12011.157193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.269 3.731 4 H 0.051 0.949 5 C -0.535 4.535 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.699 5.699 14 C 0.540 3.460 15 O -0.541 6.541 16 C -0.115 4.115 17 C -0.072 4.072 18 C -0.124 4.124 19 C 0.087 3.913 20 O -0.250 6.250 21 C 0.072 3.928 22 C -0.104 4.104 23 C -0.136 4.136 24 C 0.062 3.938 25 N -0.449 5.449 26 C 0.035 3.965 27 C -0.148 4.148 28 C -0.048 4.048 29 H 0.050 0.950 30 H 0.038 0.962 31 H 0.023 0.977 32 H 0.031 0.969 33 H 0.100 0.900 34 H 0.264 0.736 35 H 0.388 0.612 36 H 0.140 0.860 37 H 0.137 0.863 38 H 0.144 0.856 39 H 0.143 0.857 40 H 0.159 0.841 41 H 0.162 0.838 42 H 0.133 0.867 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.036 11.785 -19.167 24.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.069 0.931 5 C -0.573 4.573 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.346 5.346 14 C 0.325 3.675 15 O -0.421 6.421 16 C -0.119 4.119 17 C -0.091 4.091 18 C -0.143 4.143 19 C 0.045 3.955 20 O -0.160 6.160 21 C 0.027 3.973 22 C -0.130 4.130 23 C -0.156 4.156 24 C -0.095 4.095 25 N -0.158 5.158 26 C -0.123 4.123 27 C -0.166 4.166 28 C -0.067 4.067 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.042 0.958 32 H 0.050 0.950 33 H 0.118 0.882 34 H 0.074 0.926 35 H 0.221 0.779 36 H 0.158 0.842 37 H 0.155 0.845 38 H 0.162 0.838 39 H 0.161 0.839 40 H 0.176 0.824 41 H 0.179 0.821 42 H 0.151 0.849 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -9.341 11.963 -17.688 23.307 hybrid contribution 1.075 -0.548 -0.984 1.557 sum -8.266 11.415 -18.671 23.393 Atomic orbital electron populations 1.21848 0.98325 0.98141 1.01232 1.21940 0.92643 0.99659 1.02392 1.18858 0.94373 0.89259 0.80739 0.93075 1.21244 0.90583 1.39004 1.06493 0.92016 1.24884 0.98653 0.94772 0.95344 1.69902 1.35070 1.37562 1.09288 0.86400 0.84796 0.77788 0.78157 1.19730 1.20859 1.20861 1.46484 1.14207 1.55255 1.18692 1.18035 0.83184 0.79611 0.86697 1.90763 1.51452 1.60073 1.39779 1.20542 0.95348 1.00550 0.95420 1.21329 0.99540 0.96757 0.91479 1.21031 0.94106 1.00577 0.98544 1.18877 0.93619 0.97689 0.85342 1.84329 1.82508 1.17094 1.32062 1.20250 0.98010 0.82886 0.96174 1.20960 1.00037 0.94302 0.97703 1.22038 0.99983 0.93686 0.99890 1.22773 0.97159 1.00732 0.88838 1.67616 1.10500 1.08443 1.29265 1.23140 1.00983 0.90480 0.97715 1.21383 0.99900 1.02347 0.92968 1.21189 0.95426 0.93130 0.96950 0.93087 0.94322 0.95772 0.94968 0.88167 0.92564 0.77880 0.84237 0.84487 0.83793 0.83888 0.82363 0.82126 0.84896 0.83729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.51 37.16 0.32 -2.72 16 2 C -0.13 -3.04 5.45 -26.73 -0.15 -3.18 16 3 C 0.27 6.59 2.24 -69.08 -0.15 6.44 16 4 H 0.05 1.46 7.58 -51.93 -0.39 1.06 16 5 C -0.53 -13.75 8.73 -34.44 -0.30 -14.06 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.25 11.29 55.43 0.63 -23.63 16 9 Si 0.90 20.27 29.54 -169.99 -5.02 15.25 16 10 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 13 N -0.70 -13.98 4.97 -55.95 -0.28 -14.26 16 14 C 0.54 10.43 6.33 -12.44 -0.08 10.35 16 15 O -0.54 -12.23 13.47 5.29 0.07 -12.16 16 16 C -0.12 -1.73 5.88 -104.95 -0.62 -2.35 16 17 C -0.07 -0.89 9.53 -39.22 -0.37 -1.26 16 18 C -0.12 -1.36 9.97 -39.49 -0.39 -1.76 16 19 C 0.09 0.99 4.75 -39.00 -0.19 0.81 16 20 O -0.25 -2.77 10.00 -2.97 -0.03 -2.80 16 21 C 0.07 0.75 6.56 -39.05 -0.26 0.49 16 22 C -0.10 -0.83 10.13 -39.13 -0.40 -1.23 16 23 C -0.14 -0.91 10.11 -39.47 -0.40 -1.31 16 24 C 0.06 0.52 11.18 -17.53 -0.20 0.32 16 25 N -0.45 -5.13 10.36 -13.12 -0.14 -5.27 16 26 C 0.04 0.40 9.97 -17.37 -0.17 0.22 16 27 C -0.15 -1.70 8.34 -39.49 -0.33 -2.03 16 28 C -0.05 -0.65 9.58 -39.22 -0.38 -1.02 16 29 H 0.05 1.19 7.84 -51.93 -0.41 0.78 16 30 H 0.04 0.82 5.65 -51.93 -0.29 0.53 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.10 2.64 5.95 -51.93 -0.31 2.34 16 34 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 35 H 0.39 6.65 6.56 -40.82 -0.27 6.38 16 36 H 0.14 1.51 6.39 -52.49 -0.34 1.17 16 37 H 0.14 1.23 8.06 -52.49 -0.42 0.80 16 38 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 39 H 0.14 0.49 8.06 -52.48 -0.42 0.07 16 40 H 0.16 0.87 8.06 -52.49 -0.42 0.45 16 41 H 0.16 1.86 6.20 -52.49 -0.33 1.54 16 42 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 43 H 0.14 1.97 7.64 -52.48 -0.40 1.57 16 LS Contribution 359.94 15.07 5.42 5.42 Total: -1.00 -30.80 359.94 -8.73 -39.53 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -5.23 Total: 8.53 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: -4.15 Total: -10.62 kcal Atomic # 7 Polarization: -43.37 SS G_CDS: 0.21 Total: -43.15 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: 0.04 Total: -14.96 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.80 -8.73 -39.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183879655.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.477 kcal (2) G-P(sol) polarization free energy of solvation -30.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds