Wall clock time and date at job start Tue Mar 31 2020 15:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46728 * 2 1 4 4 H 1.08996 * 109.47159 * 55.00316 * 3 2 1 5 5 C 1.50704 * 109.46874 * 174.99813 * 3 2 1 6 6 H 1.07999 * 119.99906 * 120.27225 * 5 3 2 7 7 C 1.37882 * 119.99878 * 300.00235 * 5 3 2 8 8 N 1.31510 * 119.99841 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99842 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47287 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47166 * 119.99553 * 9 7 5 12 12 H 1.48503 * 109.46932 * 239.99790 * 9 7 5 13 13 N 1.46503 * 109.47171 * 294.99280 * 3 2 1 14 14 C 1.34773 * 119.99402 * 85.00522 * 13 3 2 15 15 O 1.21586 * 120.00369 * 0.02562 * 14 13 3 16 16 C 1.47605 * 120.00057 * 179.97438 * 14 13 3 17 17 C 1.39748 * 120.08148 * 359.72614 * 16 14 13 18 18 C 1.37690 * 119.90713 * 179.69980 * 17 16 14 19 19 C 1.39018 * 120.08820 * 0.59581 * 18 17 16 20 20 O 1.35702 * 119.91387 * 179.70015 * 19 18 17 21 21 C 1.35889 * 117.99922 * 247.47658 * 20 19 18 22 22 C 1.39172 * 120.47443 * 186.11619 * 21 20 19 23 23 C 1.38529 * 118.37012 * 179.97438 * 22 21 20 24 24 C 1.38258 * 119.22583 * 359.97438 * 23 22 21 25 25 N 1.31857 * 120.88892 * 0.02562 * 24 23 22 26 26 C 1.31836 * 121.78516 * 359.68676 * 25 24 23 27 27 C 1.39021 * 120.17369 * 359.67791 * 19 18 17 28 28 C 1.37690 * 120.08338 * 0.02680 * 27 19 18 29 29 H 1.08993 * 109.47174 * 300.00427 * 1 2 3 30 30 H 1.09002 * 109.47055 * 60.00320 * 1 2 3 31 31 H 1.08999 * 109.46861 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46863 * 239.99992 * 2 1 3 33 33 H 1.09002 * 109.47055 * 119.99680 * 2 1 3 34 34 H 0.97007 * 119.99395 * 180.02562 * 8 7 5 35 35 H 0.96996 * 120.00022 * 265.00418 * 13 3 2 36 36 H 1.08001 * 120.04040 * 359.97438 * 17 16 14 37 37 H 1.07998 * 119.95247 * 180.27778 * 18 17 16 38 38 H 1.07999 * 120.80967 * 359.97438 * 22 21 20 39 39 H 1.08005 * 120.38106 * 180.02562 * 23 22 21 40 40 H 1.07995 * 119.55186 * 179.97438 * 24 23 22 41 41 H 1.07998 * 119.65691 * 180.31199 * 26 25 24 42 42 H 1.07999 * 119.95687 * 179.97438 * 27 19 18 43 43 H 1.08003 * 120.04153 * 180.02562 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1470 1.8929 -0.6501 7 6 4.1432 0.8784 1.2281 8 7 3.4061 0.3375 2.1733 9 14 6.0049 0.8814 1.3820 10 1 6.5987 1.5464 0.1944 11 1 6.3989 1.6169 2.6104 12 1 6.4970 -0.5174 1.4631 13 7 1.6525 2.0975 -1.2519 14 6 0.4352 2.6643 -1.3670 15 8 -0.3412 2.6326 -0.4319 16 6 0.0449 3.3247 -2.6281 17 6 0.9384 3.3682 -3.7018 18 6 0.5683 3.9797 -4.8786 19 6 -0.6876 4.5642 -4.9953 20 8 -1.0465 5.1713 -6.1547 21 6 -1.2129 6.5199 -6.1437 22 6 -1.7021 7.1799 -7.2671 23 6 -1.8551 8.5554 -7.2078 24 6 -1.5202 9.2224 -6.0440 25 7 -1.0591 8.5669 -4.9969 26 6 -0.9040 7.2578 -5.0102 27 6 -1.5771 4.5281 -3.9275 28 6 -1.2167 3.9131 -2.7495 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8292 -0.0603 2.9503 35 1 2.2720 2.1231 -1.9978 36 1 1.9162 2.9188 -3.6100 37 1 1.2565 4.0097 -5.7103 38 1 -1.9562 6.6330 -8.1630 39 1 -2.2325 9.1003 -8.0606 40 1 -1.6370 10.2948 -5.9921 41 1 -0.5282 6.7552 -4.1313 42 1 -2.5518 4.9837 -4.0218 43 1 -1.9084 3.8851 -1.9205 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183879655.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:34 Heat of formation + Delta-G solvation = -21.526804 kcal Electronic energy + Delta-G solvation = -26341.451500 eV Core-core repulsion = 22544.569214 eV Total energy + Delta-G solvation = -3796.882287 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.29767 -41.11091 -40.11080 -38.46615 -36.91820 -34.42038 -33.52873 -33.03042 -32.26515 -31.69014 -30.85772 -28.88039 -25.85232 -24.93503 -24.70331 -23.75536 -23.66182 -22.03972 -21.21026 -19.92068 -19.48743 -18.31423 -17.83773 -17.68773 -17.51912 -16.88879 -16.33836 -16.27226 -16.09861 -15.65062 -15.30216 -15.15895 -14.86981 -14.61878 -14.59100 -14.15409 -14.13109 -13.84678 -13.70039 -13.54970 -13.23200 -13.18369 -13.04520 -12.87617 -12.70591 -12.15603 -12.11703 -12.06403 -11.59709 -11.04947 -10.83814 -10.78747 -10.59940 -10.53710 -10.21494 -10.02982 -9.67957 -9.45118 -8.16280 -6.33419 -0.49337 0.06808 0.18060 0.24744 1.44411 1.45971 1.57276 1.61002 2.10255 2.33455 2.56671 2.74038 2.77892 3.13728 3.47019 3.63137 3.68639 3.75246 3.84164 3.92234 4.04653 4.10467 4.26083 4.29394 4.48909 4.56004 4.56836 4.64615 4.74511 4.85492 4.92714 5.00599 5.07451 5.09779 5.11329 5.20897 5.29944 5.39982 5.42928 5.54416 5.60167 5.64843 5.78919 5.91275 6.16034 6.29055 6.73903 6.92350 6.92382 7.32146 7.50547 8.89372 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.020519 B = 0.002454 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.236579 B =11405.176201 C =12011.157193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 C 0.277 3.723 4 H 0.000 1.000 5 C -0.546 4.546 6 H 0.073 0.927 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 0.970 3.030 10 H -0.260 1.260 11 H -0.286 1.286 12 H -0.279 1.279 13 N -0.696 5.696 14 C 0.539 3.461 15 O -0.583 6.583 16 C -0.139 4.139 17 C -0.063 4.063 18 C -0.119 4.119 19 C 0.098 3.902 20 O -0.252 6.252 21 C 0.056 3.944 22 C -0.101 4.101 23 C -0.121 4.121 24 C 0.056 3.944 25 N -0.484 5.484 26 C 0.015 3.985 27 C -0.142 4.142 28 C -0.052 4.052 29 H 0.026 0.974 30 H 0.042 0.958 31 H 0.046 0.954 32 H 0.042 0.958 33 H 0.073 0.927 34 H 0.265 0.735 35 H 0.403 0.597 36 H 0.155 0.845 37 H 0.165 0.835 38 H 0.168 0.832 39 H 0.184 0.816 40 H 0.185 0.815 41 H 0.147 0.853 42 H 0.147 0.853 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.655 13.080 -22.971 27.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.160 4.160 3 C 0.174 3.826 4 H 0.018 0.982 5 C -0.585 4.585 6 H 0.091 0.909 7 C -0.185 4.185 8 N -0.553 5.553 9 Si 0.795 3.205 10 H -0.183 1.183 11 H -0.212 1.212 12 H -0.205 1.205 13 N -0.345 5.345 14 C 0.327 3.673 15 O -0.465 6.465 16 C -0.142 4.142 17 C -0.082 4.082 18 C -0.137 4.137 19 C 0.055 3.945 20 O -0.163 6.163 21 C 0.011 3.989 22 C -0.128 4.128 23 C -0.140 4.140 24 C -0.101 4.101 25 N -0.194 5.194 26 C -0.142 4.142 27 C -0.161 4.161 28 C -0.071 4.071 29 H 0.045 0.955 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.239 0.761 36 H 0.173 0.827 37 H 0.182 0.818 38 H 0.186 0.814 39 H 0.201 0.799 40 H 0.202 0.798 41 H 0.164 0.836 42 H 0.165 0.835 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -8.953 13.267 -21.534 26.830 hybrid contribution 0.841 -0.775 0.070 1.145 sum -8.112 12.492 -21.464 26.126 Atomic orbital electron populations 1.21687 0.97067 0.99192 1.00224 1.21789 0.93684 0.99042 1.01467 1.18435 0.93842 0.89244 0.81104 0.98208 1.21587 0.91243 1.38773 1.06862 0.90888 1.25762 1.03261 0.94415 0.95026 1.70055 1.36978 1.38388 1.09840 0.85331 0.79193 0.77807 0.78207 1.18337 1.21178 1.20467 1.46202 1.15096 1.55430 1.17789 1.18631 0.82205 0.78716 0.87738 1.90735 1.52491 1.61528 1.41734 1.20173 0.96904 1.02827 0.94295 1.21441 0.99534 0.96243 0.90967 1.21265 0.94306 0.99440 0.98653 1.19004 0.93519 0.96706 0.85275 1.84303 1.82823 1.17712 1.31417 1.20393 0.99316 0.82271 0.96892 1.21382 0.98761 0.95024 0.97602 1.22473 0.98001 0.93208 1.00349 1.23348 0.96061 1.02050 0.88686 1.67577 1.11999 1.08662 1.31166 1.22967 1.02441 0.90871 0.97893 1.21435 1.00669 1.01702 0.92248 1.21135 0.94904 0.93537 0.97553 0.95488 0.93909 0.93521 0.93877 0.90847 0.92603 0.76060 0.82709 0.81783 0.81436 0.79858 0.79833 0.83607 0.83485 0.84726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.63 8.51 71.98 0.61 -5.02 16 2 C -0.12 -5.93 5.45 30.60 0.17 -5.76 16 3 C 0.28 14.09 2.24 44.25 0.10 14.19 16 4 H 0.00 0.00 7.58 -2.39 -0.02 -0.02 16 5 C -0.55 -28.48 8.73 25.60 0.22 -28.25 16 6 H 0.07 3.55 7.74 -2.91 -0.02 3.52 16 7 C 0.02 0.83 5.29 84.66 0.45 1.28 16 8 N -0.91 -51.95 11.29 21.45 0.24 -51.71 16 9 Si 0.97 41.67 29.54 68.60 2.03 43.70 16 10 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 11 H -0.29 -12.34 7.11 99.48 0.71 -11.63 16 12 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 13 N -0.70 -28.49 4.97 -449.20 -2.23 -30.72 16 14 C 0.54 21.62 6.33 86.72 0.55 22.17 16 15 O -0.58 -27.90 13.47 -3.99 -0.05 -27.95 16 16 C -0.14 -4.21 5.88 -20.08 -0.12 -4.33 16 17 C -0.06 -1.47 9.53 22.51 0.21 -1.26 16 18 C -0.12 -2.35 9.97 22.33 0.22 -2.13 16 19 C 0.10 2.07 4.75 22.64 0.11 2.18 16 20 O -0.25 -5.04 10.00 -33.55 -0.34 -5.37 16 21 C 0.06 1.05 6.56 22.61 0.15 1.20 16 22 C -0.10 -1.29 10.13 22.56 0.23 -1.06 16 23 C -0.12 -1.15 10.11 22.34 0.23 -0.92 16 24 C 0.06 0.79 11.18 84.69 0.95 1.73 16 25 N -0.48 -10.58 10.36 -195.42 -2.02 -12.60 16 26 C 0.02 0.34 9.97 84.81 0.85 1.18 16 27 C -0.14 -3.19 8.34 22.33 0.19 -3.00 16 28 C -0.05 -1.44 9.58 22.50 0.22 -1.22 16 29 H 0.03 1.31 7.84 -2.39 -0.02 1.29 16 30 H 0.04 1.87 5.65 -2.39 -0.01 1.86 16 31 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.07 4.03 5.95 -2.39 -0.01 4.01 16 34 H 0.26 14.24 8.31 -92.70 -0.77 13.47 16 35 H 0.40 13.70 6.56 -92.71 -0.61 13.09 16 36 H 0.16 3.05 6.39 -2.91 -0.02 3.03 16 37 H 0.16 2.37 8.06 -2.91 -0.02 2.35 16 38 H 0.17 1.29 8.06 -2.91 -0.02 1.27 16 39 H 0.18 0.24 8.06 -2.91 -0.02 0.21 16 40 H 0.18 1.44 8.06 -2.91 -0.02 1.42 16 41 H 0.15 3.45 6.20 -2.91 -0.02 3.43 16 42 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 43 H 0.13 3.91 7.64 -2.91 -0.02 3.88 16 Total: -1.00 -70.15 359.94 3.39 -66.76 By element: Atomic # 1 Polarization: 26.49 SS G_CDS: 0.44 Total: 26.93 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: 5.32 Total: -9.03 kcal Atomic # 7 Polarization: -91.02 SS G_CDS: -4.01 Total: -95.03 kcal Atomic # 8 Polarization: -32.94 SS G_CDS: -0.39 Total: -33.33 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Total: -70.15 3.39 -66.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183879655.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.236 kcal (2) G-P(sol) polarization free energy of solvation -70.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds