Wall clock time and date at job start Tue Mar 31 2020 15:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47184 * 2 1 4 4 H 1.09002 * 109.47204 * 307.37390 * 3 2 1 5 5 C 1.50698 * 109.47317 * 187.36955 * 3 2 1 6 6 H 1.07995 * 119.99903 * 243.74662 * 5 3 2 7 7 C 1.37876 * 119.99864 * 63.74581 * 5 3 2 8 8 N 1.31513 * 119.99616 * 204.36786 * 7 5 3 9 9 Si 1.86799 * 120.00184 * 24.36717 * 7 5 3 10 10 H 1.48496 * 109.47076 * 179.97438 * 9 7 5 11 11 H 1.48502 * 109.47099 * 299.99934 * 9 7 5 12 12 H 1.48493 * 109.47238 * 60.00028 * 9 7 5 13 13 N 1.46504 * 109.46868 * 67.36986 * 3 2 1 14 14 C 1.34782 * 119.99940 * 274.99742 * 13 3 2 15 15 O 1.21587 * 119.99632 * 0.02562 * 14 13 3 16 16 C 1.47599 * 119.99922 * 179.97438 * 14 13 3 17 17 C 1.39740 * 120.08510 * 359.73375 * 16 14 13 18 18 C 1.37698 * 119.90804 * 179.69475 * 17 16 14 19 19 C 1.39020 * 120.08566 * 0.59731 * 18 17 16 20 20 O 1.35695 * 119.90942 * 179.69636 * 19 18 17 21 21 C 1.35899 * 118.00019 * 256.79213 * 20 19 18 22 22 C 1.39167 * 120.47575 * 184.38538 * 21 20 19 23 23 C 1.38525 * 118.37215 * 179.97438 * 22 21 20 24 24 C 1.38259 * 119.22264 * 0.02562 * 23 22 21 25 25 N 1.31850 * 120.89169 * 0.02562 * 24 23 22 26 26 C 1.31833 * 121.78470 * 359.68927 * 25 24 23 27 27 C 1.39015 * 120.17292 * 359.67506 * 19 18 17 28 28 C 1.37688 * 120.08685 * 0.02562 * 27 19 18 29 29 H 1.09000 * 109.47652 * 59.99806 * 1 2 3 30 30 H 1.09001 * 109.47013 * 180.02562 * 1 2 3 31 31 H 1.09010 * 109.47145 * 299.99964 * 1 2 3 32 32 H 1.08999 * 109.47359 * 240.00503 * 2 1 3 33 33 H 1.09000 * 109.47652 * 120.00194 * 2 1 3 34 34 H 0.96997 * 120.00525 * 354.96534 * 8 7 5 35 35 H 0.97001 * 120.00192 * 95.00627 * 13 3 2 36 36 H 1.08000 * 120.04613 * 359.97438 * 17 16 14 37 37 H 1.08002 * 119.95184 * 180.26866 * 18 17 16 38 38 H 1.08004 * 120.81194 * 0.02562 * 22 21 20 39 39 H 1.07999 * 120.38746 * 180.02562 * 23 22 21 40 40 H 1.08004 * 119.55414 * 179.97438 * 24 23 22 41 41 H 1.07998 * 119.65931 * 180.31199 * 26 25 24 42 42 H 1.08000 * 119.95578 * 180.02562 * 27 19 18 43 43 H 1.08002 * 120.04510 * 179.97438 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5730 1.9931 -0.8167 5 6 3.5359 1.4465 -0.1822 6 1 4.1744 1.8254 0.6020 7 6 4.0893 0.9664 -1.3502 8 7 5.3261 0.5192 -1.3565 9 14 3.0825 0.9511 -2.9236 10 1 3.9005 0.3912 -4.0293 11 1 1.8725 0.1125 -2.7288 12 1 2.6743 2.3377 -3.2636 13 7 1.7016 2.0801 1.2749 14 6 0.4899 2.6451 1.4452 15 8 -0.3226 2.6252 0.5409 16 6 0.1488 3.2869 2.7299 17 6 1.0789 3.3048 3.7726 18 6 0.7592 3.9101 4.9674 19 6 -0.4914 4.4918 5.1413 20 8 -0.8049 5.0819 6.3223 21 6 -1.6180 4.4069 7.1768 22 6 -2.0460 5.0001 8.3607 23 6 -2.8744 4.2727 9.1995 24 6 -3.2455 2.9913 8.8364 25 7 -2.8214 2.4579 7.7077 26 6 -2.0367 3.1182 6.8793 27 6 -1.4214 4.4710 4.1082 28 6 -1.1070 3.8731 2.9084 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8901 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 5.8730 0.5941 -0.5590 35 1 2.3498 2.0957 1.9965 36 1 2.0488 2.8486 3.6401 37 1 1.4791 3.9282 5.7723 38 1 -1.7405 6.0034 8.6187 39 1 -3.2262 4.7016 10.1261 40 1 -3.8908 2.4192 9.4866 41 1 -1.7137 2.6498 5.9614 42 1 -2.3918 4.9243 4.2469 43 1 -1.8302 3.8569 2.1064 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183879680.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:38 Heat of formation + Delta-G solvation = -3.298920 kcal Electronic energy + Delta-G solvation = -26435.228564 eV Core-core repulsion = 22639.136697 eV Total energy + Delta-G solvation = -3796.091866 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.50632 -40.01744 -39.15791 -37.47493 -35.29986 -32.90635 -32.61195 -31.82041 -31.33290 -30.86868 -29.88707 -27.22102 -24.80975 -23.99028 -23.04552 -22.90678 -22.28117 -20.75260 -19.70179 -19.10217 -18.29854 -17.62364 -17.04651 -16.93584 -16.47832 -15.47466 -15.28357 -15.01205 -14.79878 -14.56687 -14.38095 -13.95511 -13.78640 -13.54805 -13.40017 -13.01677 -12.92711 -12.81189 -12.59344 -12.40927 -12.39884 -12.10670 -11.71563 -11.24158 -10.87437 -10.72568 -10.44487 -10.18361 -9.93579 -9.90157 -9.76316 -9.40954 -9.34170 -9.22168 -9.08050 -8.79676 -8.24242 -8.16454 -6.65641 -4.24348 0.45370 0.69272 0.84927 1.07760 2.53532 3.10648 3.37619 3.38432 3.43198 3.57837 3.80765 3.88142 4.13784 4.26242 4.38878 4.45293 4.55307 4.58789 4.61163 4.86865 4.96822 5.08214 5.09836 5.12492 5.24390 5.34653 5.55258 5.64303 5.70577 5.92991 5.99906 6.05745 6.08315 6.12996 6.17850 6.26765 6.41243 6.67695 6.78016 6.91330 7.01858 7.08407 7.31978 7.34854 7.55897 7.61672 8.19587 8.37835 8.64318 8.86955 9.42349 10.75210 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.026118 B = 0.002454 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.792514 B =11405.013369 C =11609.795178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.133 4.133 3 C 0.250 3.750 4 H 0.042 0.958 5 C -0.629 4.629 6 H 0.062 0.938 7 C 0.044 3.956 8 N -0.888 5.888 9 Si 1.037 2.963 10 H -0.283 1.283 11 H -0.271 1.271 12 H -0.280 1.280 13 N -0.692 5.692 14 C 0.540 3.460 15 O -0.543 6.543 16 C -0.115 4.115 17 C -0.073 4.073 18 C -0.125 4.125 19 C 0.086 3.914 20 O -0.251 6.251 21 C 0.073 3.927 22 C -0.104 4.104 23 C -0.136 4.136 24 C 0.062 3.938 25 N -0.449 5.449 26 C 0.035 3.965 27 C -0.139 4.139 28 C -0.049 4.049 29 H 0.050 0.950 30 H 0.031 0.969 31 H 0.049 0.951 32 H 0.066 0.934 33 H 0.050 0.950 34 H 0.270 0.730 35 H 0.392 0.608 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.144 0.856 39 H 0.144 0.856 40 H 0.159 0.841 41 H 0.160 0.840 42 H 0.135 0.865 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.333 8.030 19.956 25.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.172 4.172 3 C 0.147 3.853 4 H 0.059 0.941 5 C -0.666 4.666 6 H 0.080 0.920 7 C -0.164 4.164 8 N -0.520 5.520 9 Si 0.864 3.136 10 H -0.208 1.208 11 H -0.197 1.197 12 H -0.206 1.206 13 N -0.340 5.340 14 C 0.326 3.674 15 O -0.422 6.422 16 C -0.118 4.118 17 C -0.092 4.092 18 C -0.143 4.143 19 C 0.044 3.956 20 O -0.162 6.162 21 C 0.028 3.972 22 C -0.130 4.130 23 C -0.155 4.155 24 C -0.095 4.095 25 N -0.159 5.159 26 C -0.123 4.123 27 C -0.158 4.158 28 C -0.068 4.068 29 H 0.070 0.930 30 H 0.050 0.950 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.226 0.774 36 H 0.157 0.843 37 H 0.155 0.845 38 H 0.162 0.838 39 H 0.161 0.839 40 H 0.177 0.823 41 H 0.177 0.823 42 H 0.153 0.847 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -14.973 6.861 17.495 24.028 hybrid contribution 0.688 1.363 2.236 2.707 sum -14.286 8.224 19.731 25.711 Atomic orbital electron populations 1.21905 0.97367 0.98988 1.01989 1.22268 0.93740 0.99546 1.01648 1.19070 0.96227 0.88737 0.81286 0.94056 1.21973 0.89754 1.49711 1.05167 0.92038 1.25647 0.97792 0.91482 1.01445 1.70897 1.10313 1.36844 1.33969 0.84117 0.75837 0.77643 0.75991 1.20845 1.19720 1.20624 1.46249 1.13823 1.55599 1.18292 1.18097 0.83200 0.79373 0.86744 1.90753 1.49012 1.59812 1.42669 1.20469 0.95230 1.00897 0.95189 1.21332 0.99366 0.96804 0.91697 1.21160 0.96558 0.97630 0.98963 1.18843 0.94375 0.97914 0.84443 1.84331 1.62778 1.42918 1.26124 1.20274 0.92978 0.92574 0.91390 1.20962 0.98465 1.01382 0.92212 1.22040 0.97573 0.95587 1.00331 1.22769 0.99256 0.93514 0.93977 1.67601 1.08682 1.36245 1.03325 1.23084 0.97660 0.91125 1.00464 1.21376 0.99971 1.01092 0.93349 1.21193 0.95687 0.93354 0.96575 0.93044 0.94999 0.93189 0.91533 0.93104 0.91963 0.77366 0.84304 0.84474 0.83772 0.83864 0.82350 0.82287 0.84739 0.83666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 8.56 37.15 0.32 -2.60 16 2 C -0.13 -2.94 5.30 -26.73 -0.14 -3.08 16 3 C 0.25 5.83 1.82 -69.08 -0.13 5.70 16 4 H 0.04 1.05 6.24 -51.93 -0.32 0.73 16 5 C -0.63 -16.57 8.96 -34.44 -0.31 -16.87 16 6 H 0.06 1.69 7.97 -52.49 -0.42 1.27 16 7 C 0.04 1.22 5.16 -17.82 -0.09 1.13 16 8 N -0.89 -25.86 13.70 55.43 0.76 -25.11 16 9 Si 1.04 24.70 26.46 -169.99 -4.50 20.20 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.27 -6.10 6.11 56.52 0.35 -5.75 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 N -0.69 -13.52 4.99 -55.95 -0.28 -13.80 16 14 C 0.54 10.01 6.45 -12.44 -0.08 9.93 16 15 O -0.54 -11.56 13.48 5.29 0.07 -11.48 16 16 C -0.11 -1.66 5.88 -104.96 -0.62 -2.28 16 17 C -0.07 -0.89 9.53 -39.22 -0.37 -1.26 16 18 C -0.12 -1.35 9.97 -39.49 -0.39 -1.74 16 19 C 0.09 0.96 4.36 -39.00 -0.17 0.79 16 20 O -0.25 -2.72 9.98 -2.98 -0.03 -2.75 16 21 C 0.07 0.74 6.63 -39.06 -0.26 0.48 16 22 C -0.10 -0.81 10.13 -39.13 -0.40 -1.21 16 23 C -0.14 -0.88 10.11 -39.47 -0.40 -1.28 16 24 C 0.06 0.50 11.18 -17.54 -0.20 0.31 16 25 N -0.45 -4.99 10.35 -13.12 -0.14 -5.13 16 26 C 0.03 0.38 10.16 -17.37 -0.18 0.21 16 27 C -0.14 -1.54 9.10 -39.49 -0.36 -1.90 16 28 C -0.05 -0.63 9.58 -39.22 -0.38 -1.01 16 29 H 0.05 1.07 7.97 -51.93 -0.41 0.66 16 30 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.99 5.59 -51.92 -0.29 0.70 16 32 H 0.07 1.54 5.33 -51.93 -0.28 1.27 16 33 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.27 7.77 8.73 -40.82 -0.36 7.41 16 35 H 0.39 6.76 6.55 -40.82 -0.27 6.49 16 36 H 0.14 1.51 6.39 -52.49 -0.34 1.17 16 37 H 0.14 1.23 8.06 -52.49 -0.42 0.80 16 38 H 0.14 0.84 8.06 -52.48 -0.42 0.42 16 39 H 0.14 0.46 8.06 -52.49 -0.42 0.04 16 40 H 0.16 0.83 8.06 -52.48 -0.42 0.41 16 41 H 0.16 1.77 6.47 -52.49 -0.34 1.43 16 42 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 43 H 0.15 1.86 7.64 -52.49 -0.40 1.45 16 LS Contribution 357.60 15.07 5.39 5.39 Total: -1.00 -31.56 357.60 -8.10 -39.66 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -5.24 Total: 7.69 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: -4.15 Total: -14.68 kcal Atomic # 7 Polarization: -44.37 SS G_CDS: 0.34 Total: -44.03 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: 0.04 Total: -14.24 kcal Atomic # 14 Polarization: 24.70 SS G_CDS: -4.50 Total: 20.20 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.56 -8.10 -39.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183879680.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.363 kcal (2) G-P(sol) polarization free energy of solvation -31.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds