Wall clock time and date at job start Tue Mar 31 2020 15:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47184 * 2 1 4 4 H 1.09002 * 109.47204 * 307.37390 * 3 2 1 5 5 C 1.50698 * 109.47317 * 187.36955 * 3 2 1 6 6 H 1.07995 * 119.99903 * 243.74662 * 5 3 2 7 7 C 1.37876 * 119.99864 * 63.74581 * 5 3 2 8 8 N 1.31513 * 119.99616 * 204.36786 * 7 5 3 9 9 Si 1.86799 * 120.00184 * 24.36717 * 7 5 3 10 10 H 1.48496 * 109.47076 * 179.97438 * 9 7 5 11 11 H 1.48502 * 109.47099 * 299.99934 * 9 7 5 12 12 H 1.48493 * 109.47238 * 60.00028 * 9 7 5 13 13 N 1.46504 * 109.46868 * 67.36986 * 3 2 1 14 14 C 1.34782 * 119.99940 * 274.99742 * 13 3 2 15 15 O 1.21587 * 119.99632 * 0.02562 * 14 13 3 16 16 C 1.47599 * 119.99922 * 179.97438 * 14 13 3 17 17 C 1.39740 * 120.08510 * 359.73375 * 16 14 13 18 18 C 1.37698 * 119.90804 * 179.69475 * 17 16 14 19 19 C 1.39020 * 120.08566 * 0.59731 * 18 17 16 20 20 O 1.35695 * 119.90942 * 179.69636 * 19 18 17 21 21 C 1.35899 * 118.00019 * 256.79213 * 20 19 18 22 22 C 1.39167 * 120.47575 * 184.38538 * 21 20 19 23 23 C 1.38525 * 118.37215 * 179.97438 * 22 21 20 24 24 C 1.38259 * 119.22264 * 0.02562 * 23 22 21 25 25 N 1.31850 * 120.89169 * 0.02562 * 24 23 22 26 26 C 1.31833 * 121.78470 * 359.68927 * 25 24 23 27 27 C 1.39015 * 120.17292 * 359.67506 * 19 18 17 28 28 C 1.37688 * 120.08685 * 0.02562 * 27 19 18 29 29 H 1.09000 * 109.47652 * 59.99806 * 1 2 3 30 30 H 1.09001 * 109.47013 * 180.02562 * 1 2 3 31 31 H 1.09010 * 109.47145 * 299.99964 * 1 2 3 32 32 H 1.08999 * 109.47359 * 240.00503 * 2 1 3 33 33 H 1.09000 * 109.47652 * 120.00194 * 2 1 3 34 34 H 0.96997 * 120.00525 * 354.96534 * 8 7 5 35 35 H 0.97001 * 120.00192 * 95.00627 * 13 3 2 36 36 H 1.08000 * 120.04613 * 359.97438 * 17 16 14 37 37 H 1.08002 * 119.95184 * 180.26866 * 18 17 16 38 38 H 1.08004 * 120.81194 * 0.02562 * 22 21 20 39 39 H 1.07999 * 120.38746 * 180.02562 * 23 22 21 40 40 H 1.08004 * 119.55414 * 179.97438 * 24 23 22 41 41 H 1.07998 * 119.65931 * 180.31199 * 26 25 24 42 42 H 1.08000 * 119.95578 * 180.02562 * 27 19 18 43 43 H 1.08002 * 120.04510 * 179.97438 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5730 1.9931 -0.8167 5 6 3.5359 1.4465 -0.1822 6 1 4.1744 1.8254 0.6020 7 6 4.0893 0.9664 -1.3502 8 7 5.3261 0.5192 -1.3565 9 14 3.0825 0.9511 -2.9236 10 1 3.9005 0.3912 -4.0293 11 1 1.8725 0.1125 -2.7288 12 1 2.6743 2.3377 -3.2636 13 7 1.7016 2.0801 1.2749 14 6 0.4899 2.6451 1.4452 15 8 -0.3226 2.6252 0.5409 16 6 0.1488 3.2869 2.7299 17 6 1.0789 3.3048 3.7726 18 6 0.7592 3.9101 4.9674 19 6 -0.4914 4.4918 5.1413 20 8 -0.8049 5.0819 6.3223 21 6 -1.6180 4.4069 7.1768 22 6 -2.0460 5.0001 8.3607 23 6 -2.8744 4.2727 9.1995 24 6 -3.2455 2.9913 8.8364 25 7 -2.8214 2.4579 7.7077 26 6 -2.0367 3.1182 6.8793 27 6 -1.4214 4.4710 4.1082 28 6 -1.1070 3.8731 2.9084 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8901 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 5.8730 0.5941 -0.5590 35 1 2.3498 2.0957 1.9965 36 1 2.0488 2.8486 3.6401 37 1 1.4791 3.9282 5.7723 38 1 -1.7405 6.0034 8.6187 39 1 -3.2262 4.7016 10.1261 40 1 -3.8908 2.4192 9.4866 41 1 -1.7137 2.6498 5.9614 42 1 -2.3918 4.9243 4.2469 43 1 -1.8302 3.8569 2.1064 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183879680.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:37 Heat of formation + Delta-G solvation = -23.031333 kcal Electronic energy + Delta-G solvation = -26436.084225 eV Core-core repulsion = 22639.136697 eV Total energy + Delta-G solvation = -3796.947528 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.29606 -41.19054 -40.15334 -38.51857 -37.03465 -34.55411 -33.64573 -33.29949 -32.24360 -31.79189 -30.88370 -29.03851 -25.78837 -24.65505 -24.41973 -23.84792 -23.71067 -22.17080 -21.30371 -20.04301 -19.94604 -18.64162 -18.21337 -17.69291 -17.60748 -16.92365 -16.42899 -16.11330 -15.98301 -15.49388 -15.28701 -15.21395 -14.96953 -14.69232 -14.54805 -14.43831 -14.20336 -14.06080 -13.88170 -13.75564 -13.62415 -13.26978 -13.10379 -12.66369 -12.50562 -12.29121 -12.14528 -11.77891 -11.53674 -11.25182 -10.92421 -10.78611 -10.61857 -10.36354 -10.25541 -10.03697 -9.80814 -9.56608 -8.82995 -6.42006 -0.54300 0.05164 0.14710 0.22871 1.46047 1.50001 1.55429 1.69890 2.07859 2.35700 2.40871 2.70948 2.74358 2.96743 3.45975 3.62413 3.64452 3.71393 3.75490 3.91416 4.02653 4.07296 4.23820 4.24862 4.31222 4.39588 4.52428 4.54963 4.62893 4.80851 4.84302 4.92026 4.99264 5.07672 5.08965 5.09132 5.18040 5.20628 5.29935 5.37496 5.54094 5.60893 5.64297 5.69627 6.01059 6.27662 6.53613 6.77588 6.91189 7.25281 7.36419 8.56760 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.026118 B = 0.002454 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.792514 B =11405.013369 C =11609.795178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.130 4.130 3 C 0.254 3.746 4 H 0.023 0.977 5 C -0.624 4.624 6 H 0.042 0.958 7 C 0.002 3.998 8 N -0.918 5.918 9 Si 1.068 2.932 10 H -0.281 1.281 11 H -0.251 1.251 12 H -0.273 1.273 13 N -0.695 5.695 14 C 0.543 3.457 15 O -0.574 6.574 16 C -0.137 4.137 17 C -0.068 4.068 18 C -0.122 4.122 19 C 0.096 3.904 20 O -0.255 6.255 21 C 0.057 3.943 22 C -0.103 4.103 23 C -0.121 4.121 24 C 0.056 3.944 25 N -0.483 5.483 26 C 0.016 3.984 27 C -0.134 4.134 28 C -0.050 4.050 29 H 0.040 0.960 30 H 0.056 0.944 31 H 0.048 0.952 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.260 0.740 35 H 0.402 0.598 36 H 0.148 0.852 37 H 0.159 0.841 38 H 0.167 0.833 39 H 0.184 0.816 40 H 0.185 0.815 41 H 0.147 0.853 42 H 0.152 0.848 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.272 9.005 22.570 29.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.169 4.169 3 C 0.150 3.850 4 H 0.041 0.959 5 C -0.662 4.662 6 H 0.060 0.940 7 C -0.200 4.200 8 N -0.552 5.552 9 Si 0.890 3.110 10 H -0.207 1.207 11 H -0.176 1.176 12 H -0.199 1.199 13 N -0.344 5.344 14 C 0.331 3.669 15 O -0.456 6.456 16 C -0.140 4.140 17 C -0.086 4.086 18 C -0.140 4.140 19 C 0.054 3.946 20 O -0.166 6.166 21 C 0.012 3.988 22 C -0.129 4.129 23 C -0.140 4.140 24 C -0.101 4.101 25 N -0.193 5.193 26 C -0.141 4.141 27 C -0.152 4.152 28 C -0.069 4.069 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.238 0.762 36 H 0.166 0.834 37 H 0.177 0.823 38 H 0.184 0.816 39 H 0.201 0.799 40 H 0.202 0.798 41 H 0.164 0.836 42 H 0.170 0.830 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -16.915 7.845 20.144 27.449 hybrid contribution 1.217 1.149 1.680 2.371 sum -15.698 8.993 21.824 28.348 Atomic orbital electron populations 1.21783 0.95597 1.00387 1.01443 1.22164 0.95237 0.98270 1.01239 1.18769 0.93927 0.89732 0.82601 0.95916 1.22156 0.91418 1.48290 1.04324 0.93985 1.26711 0.97984 0.91180 1.04158 1.70995 1.11287 1.39254 1.33632 0.83716 0.75582 0.78390 0.73309 1.20695 1.17563 1.19906 1.46055 1.14865 1.56078 1.17389 1.18588 0.82116 0.78421 0.87819 1.90723 1.49732 1.60935 1.44189 1.20151 0.96800 1.03072 0.94009 1.21400 0.99206 0.96586 0.91452 1.21350 0.96974 0.96811 0.98870 1.18961 0.94311 0.96628 0.84729 1.84301 1.63310 1.43022 1.25970 1.20416 0.93636 0.92548 0.92161 1.21373 0.97910 1.02388 0.91246 1.22468 0.95880 0.94584 1.01091 1.23341 0.98959 0.94580 0.93266 1.67568 1.09652 1.37385 1.04707 1.22932 0.98789 0.91769 1.00578 1.21477 1.00743 1.00519 0.92505 1.21183 0.95025 0.93460 0.97223 0.94053 0.92549 0.93287 0.92685 0.92757 0.93047 0.76192 0.83401 0.82317 0.81565 0.79916 0.79809 0.83583 0.83005 0.84052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.29 8.56 71.98 0.62 -4.67 16 2 C -0.13 -5.70 5.30 30.59 0.16 -5.54 16 3 C 0.25 11.95 1.82 44.25 0.08 12.03 16 4 H 0.02 1.17 6.24 -2.39 -0.01 1.16 16 5 C -0.62 -33.51 8.96 25.60 0.23 -33.28 16 6 H 0.04 2.37 7.97 -2.91 -0.02 2.35 16 7 C 0.00 0.12 5.16 84.65 0.44 0.56 16 8 N -0.92 -54.60 13.70 21.45 0.29 -54.30 16 9 Si 1.07 50.03 26.46 68.60 1.82 51.84 16 10 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 11 H -0.25 -10.88 6.11 99.48 0.61 -10.27 16 12 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 13 N -0.70 -27.38 4.99 -449.18 -2.24 -29.62 16 14 C 0.54 20.25 6.45 86.71 0.56 20.81 16 15 O -0.57 -24.72 13.48 -3.99 -0.05 -24.78 16 16 C -0.14 -3.95 5.88 -20.08 -0.12 -4.07 16 17 C -0.07 -1.58 9.53 22.51 0.21 -1.37 16 18 C -0.12 -2.44 9.97 22.33 0.22 -2.22 16 19 C 0.10 1.99 4.36 22.64 0.10 2.09 16 20 O -0.25 -5.03 9.98 -33.59 -0.34 -5.37 16 21 C 0.06 1.04 6.63 22.61 0.15 1.19 16 22 C -0.10 -1.28 10.13 22.56 0.23 -1.05 16 23 C -0.12 -1.10 10.11 22.34 0.23 -0.88 16 24 C 0.06 0.75 11.18 84.69 0.95 1.70 16 25 N -0.48 -10.14 10.35 -195.42 -2.02 -12.17 16 26 C 0.02 0.34 10.16 84.81 0.86 1.21 16 27 C -0.13 -2.81 9.10 22.33 0.20 -2.60 16 28 C -0.05 -1.27 9.58 22.50 0.22 -1.05 16 29 H 0.04 1.68 7.97 -2.39 -0.02 1.67 16 30 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.05 1.92 5.59 -2.38 -0.01 1.90 16 32 H 0.05 2.52 5.33 -2.39 -0.01 2.50 16 33 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.26 15.45 8.73 -92.71 -0.81 14.65 16 35 H 0.40 13.97 6.55 -92.71 -0.61 13.36 16 36 H 0.15 3.10 6.39 -2.91 -0.02 3.08 16 37 H 0.16 2.47 8.06 -2.91 -0.02 2.45 16 38 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 39 H 0.18 0.19 8.06 -2.91 -0.02 0.17 16 40 H 0.18 1.33 8.06 -2.91 -0.02 1.31 16 41 H 0.15 3.27 6.47 -2.91 -0.02 3.25 16 42 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 43 H 0.14 3.64 7.64 -2.91 -0.02 3.62 16 Total: -1.00 -69.50 357.60 3.09 -66.41 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: 0.31 Total: 25.12 kcal Atomic # 6 Polarization: -22.47 SS G_CDS: 5.33 Total: -17.14 kcal Atomic # 7 Polarization: -92.12 SS G_CDS: -3.97 Total: -96.09 kcal Atomic # 8 Polarization: -29.76 SS G_CDS: -0.39 Total: -30.15 kcal Atomic # 14 Polarization: 50.03 SS G_CDS: 1.82 Total: 51.84 kcal Total: -69.50 3.09 -66.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183879680.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.381 kcal (2) G-P(sol) polarization free energy of solvation -69.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds