Wall clock time and date at job start Tue Mar 31 2020 14:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53000 * 109.47444 * 2 1 4 4 C 1.53001 * 109.47111 * 239.99852 * 2 1 3 5 5 C 1.50702 * 109.47035 * 59.99977 * 4 2 1 6 6 H 1.08005 * 120.00022 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00114 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99678 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99867 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47082 * 89.99725 * 9 7 5 11 11 H 1.48505 * 109.46765 * 209.99558 * 9 7 5 12 12 H 1.48499 * 109.47037 * 329.99394 * 9 7 5 13 13 C 1.52995 * 109.47239 * 120.00321 * 2 1 3 14 14 N 1.46501 * 109.47261 * 299.99578 * 13 2 1 15 15 C 1.39183 * 120.00559 * 180.02562 * 14 13 2 16 16 C 1.39200 * 119.92472 * 0.24770 * 15 14 13 17 17 C 1.37625 * 120.07900 * 180.25739 * 16 15 14 18 18 C 1.39829 * 119.91876 * 359.49319 * 17 16 15 19 19 C 1.43204 * 120.07248 * 180.27341 * 18 17 16 20 20 N 9.02243 * 100.52922 * 105.22810 * 2 1 3 21 21 C 1.39782 * 119.85424 * 0.26097 * 18 17 16 22 22 C 1.50705 * 120.03917 * 180.02562 * 21 18 17 23 23 F 1.39898 * 109.46904 * 179.97438 * 22 21 18 24 24 F 1.39897 * 109.46707 * 299.99528 * 22 21 18 25 25 F 1.39894 * 109.47120 * 59.99725 * 22 21 18 26 26 C 1.37668 * 119.92225 * 359.97438 * 21 18 17 27 27 H 1.08999 * 109.47269 * 300.00298 * 1 2 3 28 28 H 1.09003 * 109.47356 * 60.00263 * 1 2 3 29 29 H 1.09003 * 109.47667 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47208 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47085 * 299.99905 * 3 2 1 32 32 H 1.08994 * 109.46903 * 60.00030 * 3 2 1 33 33 H 1.08997 * 109.47762 * 179.97438 * 4 2 1 34 34 H 1.08995 * 109.47215 * 300.00344 * 4 2 1 35 35 H 0.97007 * 119.99458 * 180.02562 * 8 7 5 36 36 H 1.09005 * 109.47146 * 180.02562 * 13 2 1 37 37 H 1.09001 * 109.47804 * 59.99696 * 13 2 1 38 38 H 0.97003 * 119.99457 * 0.02562 * 14 13 2 39 39 H 1.08004 * 119.96283 * 0.02923 * 16 15 14 40 40 H 1.08002 * 120.04315 * 179.77820 * 17 16 15 41 41 H 1.07998 * 119.96182 * 179.97438 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5375 -0.0109 -2.4797 6 1 0.9169 0.8675 -2.3806 7 6 1.8710 -0.4816 -3.7320 8 7 1.4330 0.1387 -4.8058 9 14 2.9450 -2.0004 -3.9034 10 1 2.0864 -3.2111 -3.9493 11 1 3.7373 -1.9076 -5.1560 12 1 3.8650 -2.0898 -2.7412 13 6 2.0399 -0.7213 1.2491 14 7 1.5517 -0.0307 2.4454 15 6 1.8884 -0.5059 3.7095 16 6 2.6934 -1.6345 3.8355 17 6 3.0239 -2.1102 5.0839 18 6 2.5587 -1.4522 6.2266 19 6 2.9054 -1.9409 7.5272 20 7 3.1786 -2.3299 8.5590 21 6 1.7548 -0.3161 6.0966 22 6 1.2516 0.3967 7.3254 23 9 0.4747 1.4951 6.9420 24 9 0.4742 -0.4814 8.0882 25 9 2.3392 0.8381 8.0865 26 6 1.4240 0.1515 4.8447 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1299 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.1299 -0.7210 -1.2496 34 1 1.6765 -1.7489 -1.2493 35 1 1.6674 -0.1928 -5.6869 36 1 3.1300 -0.7209 1.2494 37 1 1.6766 -1.7490 1.2492 38 1 0.9937 0.7578 2.3564 39 1 3.0560 -2.1397 2.9524 40 1 3.6455 -2.9880 5.1809 41 1 0.8025 1.0289 4.7435 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229697535.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:20 Heat of formation + Delta-G solvation = -107.128450 kcal Electronic energy + Delta-G solvation = -27062.607908 eV Core-core repulsion = 22720.156915 eV Total energy + Delta-G solvation = -4342.450993 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.130 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.44737 -47.96376 -47.89763 -40.22897 -38.11671 -36.64271 -34.75636 -32.44488 -32.28389 -30.15117 -27.83653 -27.00885 -26.71033 -25.82536 -23.55947 -22.86242 -21.69262 -19.66021 -18.83718 -18.76448 -18.36943 -18.13957 -17.05841 -16.41048 -16.07386 -15.03827 -14.99308 -14.76491 -14.58140 -14.55967 -14.34793 -14.17478 -14.11277 -14.04119 -14.02523 -13.91193 -13.50585 -13.29234 -13.07535 -12.89727 -12.78853 -12.46131 -12.42773 -12.29555 -11.50912 -11.46246 -11.29699 -11.12455 -10.77389 -10.66048 -10.41786 -10.04353 -9.87471 -9.69975 -9.67791 -9.13619 -8.64458 -7.76173 -6.14419 -4.12760 0.38378 0.79708 2.28222 2.43911 2.69726 3.12585 3.21589 3.30739 3.30870 3.35980 3.40881 3.65876 3.76766 4.11985 4.34688 4.41782 4.73116 4.92748 4.94620 5.08958 5.15603 5.28283 5.34372 5.45485 5.50644 5.77221 5.79627 5.86258 5.88412 5.95569 6.13314 6.13351 6.39472 6.44375 6.69837 6.87702 6.89565 6.97553 7.02537 7.19677 7.26602 7.41824 7.66421 8.41304 8.89341 9.47369 10.98289 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.024312 B = 0.002537 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.437147 B =11033.025484 C =11823.450901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.061 4.061 3 C -0.130 4.130 4 C -0.001 4.001 5 C -0.514 4.514 6 H 0.078 0.922 7 C 0.067 3.933 8 N -0.902 5.902 9 Si 0.876 3.124 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.119 3.881 14 N -0.717 5.717 15 C 0.257 3.743 16 C -0.178 4.178 17 C -0.013 4.013 18 C -0.065 4.065 19 C 0.249 3.751 20 N -0.412 5.412 21 C -0.085 4.085 22 C 0.503 3.497 23 F -0.172 7.172 24 F -0.173 7.173 25 F -0.173 7.173 26 C -0.159 4.159 27 H 0.032 0.968 28 H 0.073 0.927 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.073 0.927 32 H 0.032 0.968 33 H 0.018 0.982 34 H 0.014 0.986 35 H 0.263 0.737 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.407 0.593 39 H 0.143 0.857 40 H 0.142 0.858 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.605 -0.805 19.455 19.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.062 4.062 3 C -0.187 4.187 4 C -0.039 4.039 5 C -0.552 4.552 6 H 0.096 0.904 7 C -0.134 4.134 8 N -0.540 5.540 9 Si 0.704 3.296 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.004 4.004 14 N -0.340 5.340 15 C 0.146 3.854 16 C -0.201 4.201 17 C -0.034 4.034 18 C -0.072 4.072 19 C -0.066 4.066 20 N -0.088 5.088 21 C -0.089 4.089 22 C 0.449 3.551 23 F -0.154 7.154 24 F -0.154 7.154 25 F -0.154 7.154 26 C -0.182 4.182 27 H 0.051 0.949 28 H 0.092 0.908 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.092 0.908 32 H 0.051 0.949 33 H 0.036 0.964 34 H 0.032 0.968 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.244 0.756 39 H 0.161 0.839 40 H 0.159 0.841 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.079 -1.473 20.652 20.732 hybrid contribution 0.134 -0.228 -0.555 0.615 sum 1.213 -1.701 20.097 20.205 Atomic orbital electron populations 1.21785 0.94619 1.01356 1.00977 1.20669 0.95957 0.95990 0.93576 1.21781 1.00476 0.95484 1.00973 1.19592 0.96234 0.95454 0.92615 1.21052 1.32102 1.13480 0.88587 0.90408 1.25015 0.95675 0.96759 0.95989 1.69900 1.45702 1.40475 0.97958 0.86847 0.81226 0.83861 0.77711 1.20363 1.21466 1.19067 1.21869 0.98741 0.96191 0.83571 1.45199 1.54394 1.32121 1.02317 1.17941 0.90494 0.91340 0.85625 1.20839 1.02989 0.98055 0.98255 1.20871 0.95274 0.97491 0.89756 1.15261 1.06362 0.98457 0.87087 1.25564 0.93990 0.94190 0.92816 1.81227 1.08811 1.08136 1.10639 1.19545 1.00652 0.96365 0.92383 1.18318 0.75687 0.77235 0.83846 1.93186 1.75819 1.55427 1.90937 1.93242 1.75716 1.68832 1.77648 1.93241 1.54552 1.89914 1.77735 1.20288 1.05534 1.03096 0.89291 0.94922 0.90784 0.93321 0.93316 0.90783 0.94918 0.96365 0.96809 0.92689 0.91636 0.91637 0.75598 0.83896 0.84070 0.83712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.94 8.05 37.15 0.30 -1.64 16 2 C -0.06 -0.93 0.54 -154.52 -0.08 -1.01 16 3 C -0.13 -1.94 8.05 37.16 0.30 -1.64 16 4 C 0.00 -0.02 3.11 -27.88 -0.09 -0.11 16 5 C -0.51 -12.76 8.20 -34.44 -0.28 -13.05 16 6 H 0.08 2.07 5.92 -52.48 -0.31 1.76 16 7 C 0.07 1.79 5.47 -17.82 -0.10 1.69 16 8 N -0.90 -26.00 13.96 55.43 0.77 -25.22 16 9 Si 0.88 20.02 27.47 -169.99 -4.67 15.35 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.27 -5.74 6.54 56.52 0.37 -5.37 16 13 C 0.12 1.39 3.79 -4.04 -0.02 1.38 16 14 N -0.72 -6.88 5.12 -58.62 -0.30 -7.18 16 15 C 0.26 2.31 6.65 -83.82 -0.56 1.75 16 16 C -0.18 -1.46 9.28 -39.45 -0.37 -1.82 16 17 C -0.01 -0.10 9.75 -39.21 -0.38 -0.48 16 18 C -0.07 -0.63 5.72 -106.80 -0.61 -1.24 16 19 C 0.25 2.89 13.18 -22.47 -0.30 2.60 16 20 N -0.41 -5.61 18.54 41.84 0.78 -4.83 16 21 C -0.08 -0.82 5.40 -104.25 -0.56 -1.38 16 22 C 0.50 5.28 2.89 36.01 0.10 5.39 16 23 F -0.17 -1.71 15.97 2.25 0.04 -1.67 16 24 F -0.17 -1.99 16.52 2.25 0.04 -1.95 16 25 F -0.17 -1.99 16.52 2.25 0.04 -1.95 16 26 C -0.16 -1.38 9.26 -39.45 -0.37 -1.75 16 27 H 0.03 0.39 6.86 -51.93 -0.36 0.03 16 28 H 0.07 1.31 6.62 -51.93 -0.34 0.96 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 1.31 6.62 -51.93 -0.34 0.96 16 32 H 0.03 0.39 6.86 -51.93 -0.36 0.03 16 33 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 34 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 35 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 36 H 0.07 0.74 7.92 -51.93 -0.41 0.33 16 37 H 0.07 0.74 7.95 -51.93 -0.41 0.33 16 38 H 0.41 3.66 6.17 -40.82 -0.25 3.41 16 39 H 0.14 1.04 6.70 -52.48 -0.35 0.69 16 40 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 41 H 0.15 1.07 7.14 -52.49 -0.38 0.70 16 LS Contribution 350.35 15.07 5.28 5.28 Total: -1.00 -28.40 350.35 -5.75 -34.15 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -4.71 Total: -0.65 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: -3.00 Total: -11.32 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 1.25 Total: -37.24 kcal Atomic # 9 Polarization: -5.68 SS G_CDS: 0.11 Total: -5.57 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -4.67 Total: 15.35 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -28.40 -5.75 -34.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229697535.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.979 kcal (2) G-P(sol) polarization free energy of solvation -28.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds