Wall clock time and date at job start Tue Mar 31 2020 14:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53000 * 109.47444 * 2 1 4 4 C 1.53001 * 109.47111 * 239.99852 * 2 1 3 5 5 C 1.50702 * 109.47035 * 59.99977 * 4 2 1 6 6 H 1.08005 * 120.00022 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00114 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99678 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99867 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47082 * 89.99725 * 9 7 5 11 11 H 1.48505 * 109.46765 * 209.99558 * 9 7 5 12 12 H 1.48499 * 109.47037 * 329.99394 * 9 7 5 13 13 C 1.52995 * 109.47239 * 120.00321 * 2 1 3 14 14 N 1.46501 * 109.47261 * 299.99578 * 13 2 1 15 15 C 1.39183 * 120.00559 * 180.02562 * 14 13 2 16 16 C 1.39200 * 119.92472 * 0.24770 * 15 14 13 17 17 C 1.37625 * 120.07900 * 180.25739 * 16 15 14 18 18 C 1.39829 * 119.91876 * 359.49319 * 17 16 15 19 19 C 1.43204 * 120.07248 * 180.27341 * 18 17 16 20 20 N 9.02243 * 100.52922 * 105.22810 * 2 1 3 21 21 C 1.39782 * 119.85424 * 0.26097 * 18 17 16 22 22 C 1.50705 * 120.03917 * 180.02562 * 21 18 17 23 23 F 1.39898 * 109.46904 * 179.97438 * 22 21 18 24 24 F 1.39897 * 109.46707 * 299.99528 * 22 21 18 25 25 F 1.39894 * 109.47120 * 59.99725 * 22 21 18 26 26 C 1.37668 * 119.92225 * 359.97438 * 21 18 17 27 27 H 1.08999 * 109.47269 * 300.00298 * 1 2 3 28 28 H 1.09003 * 109.47356 * 60.00263 * 1 2 3 29 29 H 1.09003 * 109.47667 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47208 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47085 * 299.99905 * 3 2 1 32 32 H 1.08994 * 109.46903 * 60.00030 * 3 2 1 33 33 H 1.08997 * 109.47762 * 179.97438 * 4 2 1 34 34 H 1.08995 * 109.47215 * 300.00344 * 4 2 1 35 35 H 0.97007 * 119.99458 * 180.02562 * 8 7 5 36 36 H 1.09005 * 109.47146 * 180.02562 * 13 2 1 37 37 H 1.09001 * 109.47804 * 59.99696 * 13 2 1 38 38 H 0.97003 * 119.99457 * 0.02562 * 14 13 2 39 39 H 1.08004 * 119.96283 * 0.02923 * 16 15 14 40 40 H 1.08002 * 120.04315 * 179.77820 * 17 16 15 41 41 H 1.07998 * 119.96182 * 179.97438 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5375 -0.0109 -2.4797 6 1 0.9169 0.8675 -2.3806 7 6 1.8710 -0.4816 -3.7320 8 7 1.4330 0.1387 -4.8058 9 14 2.9450 -2.0004 -3.9034 10 1 2.0864 -3.2111 -3.9493 11 1 3.7373 -1.9076 -5.1560 12 1 3.8650 -2.0898 -2.7412 13 6 2.0399 -0.7213 1.2491 14 7 1.5517 -0.0307 2.4454 15 6 1.8884 -0.5059 3.7095 16 6 2.6934 -1.6345 3.8355 17 6 3.0239 -2.1102 5.0839 18 6 2.5587 -1.4522 6.2266 19 6 2.9054 -1.9409 7.5272 20 7 3.1786 -2.3299 8.5590 21 6 1.7548 -0.3161 6.0966 22 6 1.2516 0.3967 7.3254 23 9 0.4747 1.4951 6.9420 24 9 0.4742 -0.4814 8.0882 25 9 2.3392 0.8381 8.0865 26 6 1.4240 0.1515 4.8447 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1299 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.1299 -0.7210 -1.2496 34 1 1.6765 -1.7489 -1.2493 35 1 1.6674 -0.1928 -5.6869 36 1 3.1300 -0.7209 1.2494 37 1 1.6766 -1.7490 1.2492 38 1 0.9937 0.7578 2.3564 39 1 3.0560 -2.1397 2.9524 40 1 3.6455 -2.9880 5.1809 41 1 0.8025 1.0289 4.7435 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229697535.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:19 Heat of formation + Delta-G solvation = -121.751114 kcal Electronic energy + Delta-G solvation = -27063.241994 eV Core-core repulsion = 22720.156915 eV Total energy + Delta-G solvation = -4343.085079 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.130 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -51.27461 -48.77437 -48.75767 -40.95041 -39.17756 -37.60880 -35.79059 -34.25392 -32.96369 -31.10400 -29.41276 -27.93060 -27.83151 -26.77171 -24.54909 -24.02757 -22.68099 -20.42464 -19.80190 -19.60112 -19.38099 -18.97062 -18.83208 -17.34279 -16.88537 -16.17711 -15.86353 -15.75890 -15.68896 -15.36569 -15.25301 -15.18817 -15.14620 -15.01140 -14.88521 -14.86578 -14.50426 -14.41332 -14.22500 -14.09020 -13.78897 -13.62442 -13.48970 -13.11814 -12.87587 -12.74588 -12.58999 -12.28560 -12.21108 -11.99883 -11.70774 -11.52077 -11.11485 -11.04048 -10.84230 -10.65869 -10.30948 -8.48405 -8.17643 -6.18413 -0.34497 0.16602 1.41983 1.44302 1.49509 1.53675 1.57347 1.91543 2.34183 2.44063 2.57808 2.66756 2.87903 2.98969 3.18798 3.31276 3.80110 3.97460 4.10049 4.15055 4.17295 4.32370 4.33867 4.65761 4.73814 4.81564 4.82728 4.86773 5.02492 5.09986 5.16106 5.17179 5.21548 5.39676 5.42156 5.49310 5.51563 5.63021 5.75858 5.83166 6.19861 6.41035 6.44061 6.70327 6.90569 7.44666 8.98428 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.024312 B = 0.002537 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.437147 B =11033.025484 C =11823.450901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.058 4.058 3 C -0.126 4.126 4 C -0.003 4.003 5 C -0.503 4.503 6 H 0.044 0.956 7 C -0.002 4.002 8 N -0.958 5.958 9 Si 0.939 3.061 10 H -0.272 1.272 11 H -0.297 1.297 12 H -0.238 1.238 13 C 0.132 3.868 14 N -0.715 5.715 15 C 0.257 3.743 16 C -0.175 4.175 17 C 0.000 4.000 18 C -0.077 4.077 19 C 0.266 3.734 20 N -0.456 5.456 21 C -0.090 4.090 22 C 0.501 3.499 23 F -0.169 7.169 24 F -0.182 7.182 25 F -0.182 7.182 26 C -0.153 4.153 27 H 0.064 0.936 28 H 0.034 0.966 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.034 0.966 32 H 0.065 0.935 33 H 0.022 0.978 34 H 0.021 0.979 35 H 0.260 0.740 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.410 0.590 39 H 0.159 0.841 40 H 0.165 0.835 41 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.568 -2.146 20.962 21.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.059 4.059 3 C -0.183 4.183 4 C -0.041 4.041 5 C -0.541 4.541 6 H 0.062 0.938 7 C -0.197 4.197 8 N -0.600 5.600 9 Si 0.764 3.236 10 H -0.198 1.198 11 H -0.224 1.224 12 H -0.161 1.161 13 C 0.008 3.992 14 N -0.339 5.339 15 C 0.146 3.854 16 C -0.198 4.198 17 C -0.021 4.021 18 C -0.084 4.084 19 C -0.048 4.048 20 N -0.133 5.133 21 C -0.094 4.094 22 C 0.447 3.553 23 F -0.150 7.150 24 F -0.163 7.163 25 F -0.163 7.163 26 C -0.176 4.176 27 H 0.083 0.917 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.083 0.917 33 H 0.041 0.959 34 H 0.039 0.961 35 H 0.069 0.931 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.248 0.752 39 H 0.176 0.824 40 H 0.183 0.817 41 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 2.042 -2.813 22.203 22.474 hybrid contribution -0.247 0.300 -1.009 1.081 sum 1.796 -2.513 21.195 21.419 Atomic orbital electron populations 1.21717 0.94638 1.01313 1.00677 1.20524 0.95909 0.95870 0.93549 1.21714 1.00464 0.95469 1.00678 1.19577 0.96308 0.95623 0.92611 1.21449 1.30020 1.12108 0.90532 0.93795 1.25953 0.97667 1.00260 0.95855 1.70077 1.48447 1.42961 0.98514 0.85820 0.79749 0.79885 0.78121 1.19768 1.22376 1.16145 1.21586 0.99242 0.96091 0.82273 1.44986 1.54756 1.32283 1.01924 1.17979 0.90656 0.91616 0.85142 1.21046 1.02341 0.97628 0.98810 1.21096 0.94544 0.97646 0.88833 1.15405 1.07236 0.98991 0.86735 1.25882 0.92854 0.93136 0.92887 1.81238 1.10476 1.09694 1.11855 1.19498 1.01168 0.96542 0.92219 1.18489 0.75455 0.77304 0.84074 1.93188 1.75722 1.55286 1.90844 1.93225 1.75944 1.69123 1.78006 1.93224 1.54960 1.90025 1.78091 1.20368 1.05189 1.03279 0.88720 0.91667 0.94665 0.93183 0.93201 0.94655 0.91664 0.95938 0.96113 0.93081 0.90585 0.90534 0.75185 0.82361 0.81727 0.82490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.55 8.05 71.98 0.58 -2.97 16 2 C -0.06 -1.62 0.54 -52.19 -0.03 -1.65 16 3 C -0.13 -3.55 8.05 71.98 0.58 -2.97 16 4 C 0.00 -0.13 3.11 29.85 0.09 -0.03 16 5 C -0.50 -25.33 8.20 25.60 0.21 -25.12 16 6 H 0.04 2.46 5.92 -2.91 -0.02 2.44 16 7 C 0.00 -0.10 5.47 84.66 0.46 0.36 16 8 N -0.96 -57.35 13.96 21.45 0.30 -57.05 16 9 Si 0.94 40.83 27.47 68.60 1.88 42.72 16 10 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 11 H -0.30 -13.23 7.11 99.48 0.71 -12.53 16 12 H -0.24 -9.19 6.54 99.48 0.65 -8.54 16 13 C 0.13 2.49 3.79 86.38 0.33 2.82 16 14 N -0.72 -10.61 5.12 -339.38 -1.74 -12.34 16 15 C 0.26 3.52 6.65 38.43 0.26 3.78 16 16 C -0.18 -2.07 9.28 22.36 0.21 -1.86 16 17 C 0.00 0.00 9.75 22.51 0.22 0.22 16 18 C -0.08 -1.29 5.72 -21.27 -0.12 -1.41 16 19 C 0.27 5.81 13.18 88.33 1.16 6.97 16 20 N -0.46 -12.12 18.54 19.01 0.35 -11.77 16 21 C -0.09 -1.51 5.40 -19.62 -0.11 -1.62 16 22 C 0.50 9.79 2.89 71.24 0.21 10.00 16 23 F -0.17 -3.06 15.97 44.97 0.72 -2.34 16 24 F -0.18 -4.01 16.52 44.97 0.74 -3.26 16 25 F -0.18 -4.01 16.52 44.97 0.74 -3.26 16 26 C -0.15 -2.14 9.26 22.36 0.21 -1.93 16 27 H 0.06 1.39 6.86 -2.39 -0.02 1.37 16 28 H 0.03 1.25 6.62 -2.39 -0.02 1.24 16 29 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.03 1.26 6.62 -2.39 -0.02 1.24 16 32 H 0.06 1.39 6.86 -2.39 -0.02 1.37 16 33 H 0.02 0.84 7.20 -2.39 -0.02 0.83 16 34 H 0.02 0.77 7.57 -2.39 -0.02 0.75 16 35 H 0.26 14.79 8.31 -92.70 -0.77 14.02 16 36 H 0.08 1.34 7.92 -2.38 -0.02 1.32 16 37 H 0.08 1.34 7.95 -2.39 -0.02 1.32 16 38 H 0.41 5.61 6.17 -92.71 -0.57 5.04 16 39 H 0.16 1.45 6.70 -2.91 -0.02 1.43 16 40 H 0.17 1.16 8.06 -2.91 -0.02 1.13 16 41 H 0.16 1.78 7.14 -2.91 -0.02 1.76 16 Total: -1.00 -64.35 350.35 7.72 -56.63 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: 0.47 Total: 6.11 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: 4.25 Total: -15.43 kcal Atomic # 7 Polarization: -80.08 SS G_CDS: -1.08 Total: -81.16 kcal Atomic # 9 Polarization: -11.07 SS G_CDS: 2.20 Total: -8.87 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 1.88 Total: 42.72 kcal Total: -64.35 7.72 -56.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229697535.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.125 kcal (2) G-P(sol) polarization free energy of solvation -64.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds