Wall clock time and date at job start Tue Mar 31 2020 14:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46919 * 2 1 4 4 C 1.52993 * 109.47687 * 239.99604 * 2 1 3 5 5 C 1.50707 * 109.46957 * 60.00051 * 4 2 1 6 6 H 1.07997 * 119.99613 * 359.97438 * 5 4 2 7 7 C 1.37873 * 119.99902 * 180.02562 * 5 4 2 8 8 N 1.31519 * 119.99704 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 120.00095 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.47032 * 90.00168 * 9 7 5 11 11 H 1.48505 * 109.46920 * 209.99733 * 9 7 5 12 12 H 1.48497 * 109.47351 * 330.00137 * 9 7 5 13 13 C 1.53001 * 109.47041 * 119.99536 * 2 1 3 14 14 N 1.46502 * 109.47415 * 300.00369 * 13 2 1 15 15 C 1.39027 * 120.00102 * 179.97438 * 14 13 2 16 16 C 1.38879 * 120.17147 * 0.02562 * 15 14 13 17 17 C 1.38024 * 120.06710 * 179.97438 * 16 15 14 18 18 C 1.38570 * 120.42339 * 0.02562 * 17 16 15 19 19 C 1.50699 * 119.82709 * 179.97438 * 18 17 16 20 20 F 1.39902 * 109.46996 * 359.97438 * 19 18 17 21 21 F 1.39899 * 109.46987 * 120.00027 * 19 18 17 22 22 F 1.39897 * 109.47200 * 240.00012 * 19 18 17 23 23 C 1.37797 * 120.34495 * 359.97438 * 18 17 16 24 24 C 1.39733 * 119.91913 * 359.97438 * 23 18 17 25 25 C 1.43201 * 120.20455 * 180.27280 * 24 23 18 26 26 N 5.39005 * 72.97857 * 64.13748 * 2 1 3 27 27 H 1.08997 * 109.47185 * 300.00085 * 1 2 3 28 28 H 1.08996 * 109.46713 * 60.00652 * 1 2 3 29 29 H 1.09005 * 109.46958 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46966 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.46896 * 299.99236 * 3 2 1 32 32 H 1.08997 * 109.47261 * 59.99962 * 3 2 1 33 33 H 1.09001 * 109.47590 * 180.02562 * 4 2 1 34 34 H 1.09005 * 109.47410 * 300.00322 * 4 2 1 35 35 H 0.97003 * 119.99711 * 179.97438 * 8 7 5 36 36 H 1.08998 * 109.47345 * 180.02562 * 13 2 1 37 37 H 1.09002 * 109.46957 * 60.00057 * 13 2 1 38 38 H 0.97008 * 119.99688 * 359.97438 * 14 13 2 39 39 H 1.07991 * 119.96889 * 359.97438 * 16 15 14 40 40 H 1.08003 * 119.78738 * 180.02562 * 17 16 15 41 41 H 1.07993 * 120.04009 * 179.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5378 -0.0109 -2.4797 6 1 0.9165 0.8669 -2.3806 7 6 1.8706 -0.4823 -3.7319 8 7 1.4318 0.1373 -4.8057 9 14 2.9446 -2.0011 -3.9031 10 1 2.0861 -3.2119 -3.9479 11 1 3.7361 -1.9088 -5.1562 12 1 3.8653 -2.0898 -2.7414 13 6 2.0400 -0.7212 1.2493 14 7 1.5516 -0.0305 2.4455 15 6 1.8870 -0.5058 3.7082 16 6 2.6853 -1.6346 3.8398 17 6 3.0174 -2.1042 5.0945 18 6 2.5586 -1.4564 6.2303 19 6 2.9290 -1.9811 7.5936 20 9 3.7323 -3.1179 7.4533 21 9 3.6316 -0.9969 8.2970 22 9 1.7664 -2.3161 8.2960 23 6 1.7656 -0.3350 6.1198 24 6 1.4214 0.1535 4.8566 25 6 0.6024 1.3218 4.7346 26 7 -0.0478 2.2482 4.6377 27 1 -0.3633 0.5138 0.8899 28 1 -0.3632 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 3.1301 -0.7217 -1.2488 34 1 1.6768 -1.7490 -1.2491 35 1 1.6662 -0.1941 -5.6867 36 1 3.1300 -0.7208 1.2496 37 1 1.6766 -1.7488 1.2494 38 1 0.9941 0.7584 2.3564 39 1 3.0465 -2.1454 2.9596 40 1 3.6388 -2.9822 5.1916 41 1 1.4104 0.1658 7.0082 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229702359.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:26 Heat of formation + Delta-G solvation = -111.839331 kcal Electronic energy + Delta-G solvation = -26980.540061 eV Core-core repulsion = 22637.884789 eV Total energy + Delta-G solvation = -4342.655272 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.130 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.34145 -47.87192 -47.79414 -40.32326 -37.97791 -36.62460 -35.00216 -32.46563 -31.79172 -30.60769 -27.93019 -26.77775 -26.71209 -25.16769 -24.36948 -22.81516 -21.52589 -19.84313 -18.80318 -18.66413 -18.23312 -17.50348 -17.15565 -16.96328 -16.19706 -15.03636 -14.78178 -14.70456 -14.61160 -14.49245 -14.25224 -14.15260 -14.09693 -14.02786 -13.96689 -13.81727 -13.43903 -13.34486 -13.12455 -12.94031 -12.85184 -12.50220 -12.39416 -11.98352 -11.59599 -11.50480 -11.29996 -11.12016 -10.79106 -10.67680 -10.55726 -10.06810 -9.87129 -9.70644 -9.44541 -9.13304 -8.63625 -7.93262 -6.13331 -4.11879 0.49167 0.83951 2.35874 2.56487 2.61137 3.06443 3.22265 3.31240 3.31388 3.46511 3.50551 3.65969 3.93044 4.24792 4.35382 4.35792 4.60875 4.91319 4.94053 5.13630 5.15516 5.27087 5.34184 5.46292 5.53226 5.67479 5.77307 5.85193 5.87194 5.94980 6.13338 6.17308 6.38494 6.44370 6.68637 6.85425 6.87631 6.91863 7.02191 7.19371 7.25007 7.34575 7.66833 8.42429 8.90436 9.48121 10.99420 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.019160 B = 0.002700 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.006552 B =10367.222915 C =11467.221292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.062 4.062 3 C -0.130 4.130 4 C 0.000 4.000 5 C -0.515 4.515 6 H 0.078 0.922 7 C 0.067 3.933 8 N -0.901 5.901 9 Si 0.877 3.123 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.266 1.266 13 C 0.116 3.884 14 N -0.712 5.712 15 C 0.300 3.700 16 C -0.200 4.200 17 C 0.005 3.995 18 C -0.260 4.260 19 C 0.517 3.483 20 F -0.179 7.179 21 F -0.180 7.180 22 F -0.180 7.180 23 C 0.034 3.966 24 C -0.124 4.124 25 C 0.256 3.744 26 N -0.418 5.418 27 H 0.029 0.971 28 H 0.075 0.925 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.075 0.925 32 H 0.029 0.971 33 H 0.019 0.981 34 H 0.014 0.986 35 H 0.263 0.737 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.406 0.594 39 H 0.146 0.854 40 H 0.143 0.857 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.019 -5.656 23.192 24.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.063 4.063 3 C -0.188 4.188 4 C -0.038 4.038 5 C -0.553 4.553 6 H 0.096 0.904 7 C -0.134 4.134 8 N -0.540 5.540 9 Si 0.704 3.296 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.191 1.191 13 C -0.006 4.006 14 N -0.333 5.333 15 C 0.184 3.816 16 C -0.222 4.222 17 C -0.014 4.014 18 C -0.264 4.264 19 C 0.462 3.538 20 F -0.161 7.161 21 F -0.161 7.161 22 F -0.162 7.162 23 C 0.012 3.988 24 C -0.133 4.133 25 C -0.059 4.059 26 N -0.094 5.094 27 H 0.048 0.952 28 H 0.094 0.906 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.094 0.906 32 H 0.048 0.952 33 H 0.037 0.963 34 H 0.033 0.967 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.243 0.757 39 H 0.163 0.837 40 H 0.160 0.840 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.082 -4.316 22.615 23.228 hybrid contribution 0.646 -0.955 -0.039 1.154 sum 3.728 -5.271 22.576 23.481 Atomic orbital electron populations 1.21792 0.94627 1.01396 1.00974 1.20692 0.95976 0.96010 0.93599 1.21787 1.00519 0.95486 1.00969 1.19584 0.96253 0.95438 0.92485 1.21050 1.32124 1.13514 0.88593 0.90431 1.25014 0.95673 0.96781 0.95955 1.69902 1.45662 1.40499 0.97956 0.86839 0.81211 0.83830 0.77718 1.20343 1.21442 1.19052 1.21966 0.99010 0.96322 0.83351 1.45375 1.53407 1.31717 1.02788 1.17983 0.88628 0.90421 0.84563 1.20644 1.04782 0.98404 0.98393 1.20901 0.93293 0.96824 0.90429 1.19388 1.11956 1.03226 0.91832 1.18139 0.74432 0.75261 0.85923 1.93155 1.74447 1.52562 1.95889 1.93214 1.79553 1.62225 1.81152 1.93214 1.49117 1.92623 1.81198 1.20503 0.90495 0.91713 0.96069 1.15227 1.08822 0.96428 0.92855 1.25391 0.93124 0.92732 0.94605 1.81305 1.10678 1.11223 1.06220 0.95203 0.90641 0.93173 0.93172 0.90634 0.95210 0.96284 0.96736 0.92680 0.91176 0.91177 0.75665 0.83664 0.83968 0.84350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 8.05 37.16 0.30 -1.84 16 2 C -0.06 -1.02 0.54 -154.51 -0.08 -1.10 16 3 C -0.13 -2.14 8.05 37.16 0.30 -1.84 16 4 C 0.00 0.00 3.11 -27.88 -0.09 -0.08 16 5 C -0.52 -13.11 8.20 -34.44 -0.28 -13.39 16 6 H 0.08 2.13 5.92 -52.49 -0.31 1.82 16 7 C 0.07 1.82 5.47 -17.82 -0.10 1.73 16 8 N -0.90 -26.41 13.96 55.43 0.77 -25.63 16 9 Si 0.88 20.27 27.47 -169.99 -4.67 15.60 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.27 -5.80 6.54 56.52 0.37 -5.43 16 13 C 0.12 1.46 3.80 -4.04 -0.02 1.45 16 14 N -0.71 -8.11 5.04 -58.42 -0.29 -8.40 16 15 C 0.30 3.01 6.66 -83.56 -0.56 2.45 16 16 C -0.20 -1.69 9.29 -39.42 -0.37 -2.05 16 17 C 0.01 0.04 9.41 -39.54 -0.37 -0.33 16 18 C -0.26 -2.15 5.37 -104.66 -0.56 -2.71 16 19 C 0.52 4.40 3.31 36.00 0.12 4.52 16 20 F -0.18 -1.53 15.95 2.25 0.04 -1.50 16 21 F -0.18 -1.64 17.23 2.25 0.04 -1.61 16 22 F -0.18 -1.64 17.23 2.25 0.04 -1.61 16 23 C 0.03 0.28 9.28 -39.18 -0.36 -0.08 16 24 C -0.12 -1.23 5.76 -106.61 -0.61 -1.84 16 25 C 0.26 3.03 14.09 -22.47 -0.32 2.71 16 26 N -0.42 -5.86 18.54 41.84 0.78 -5.09 16 27 H 0.03 0.43 6.86 -51.93 -0.36 0.07 16 28 H 0.07 1.43 6.62 -51.93 -0.34 1.09 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 1.43 6.62 -51.93 -0.34 1.09 16 32 H 0.03 0.42 6.86 -51.93 -0.36 0.07 16 33 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 34 H 0.01 0.30 7.57 -51.93 -0.39 -0.10 16 35 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 36 H 0.07 0.83 7.94 -51.93 -0.41 0.42 16 37 H 0.07 0.83 7.94 -51.93 -0.41 0.41 16 38 H 0.41 4.96 5.02 -40.82 -0.20 4.75 16 39 H 0.15 1.09 6.72 -52.49 -0.35 0.74 16 40 H 0.14 0.82 7.13 -52.48 -0.37 0.44 16 41 H 0.14 0.96 8.06 -52.49 -0.42 0.53 16 LS Contribution 351.62 15.07 5.30 5.30 Total: -1.00 -28.35 351.62 -5.67 -34.02 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -4.67 Total: 1.31 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: -3.00 Total: -12.41 kcal Atomic # 7 Polarization: -40.38 SS G_CDS: 1.25 Total: -39.12 kcal Atomic # 9 Polarization: -4.82 SS G_CDS: 0.11 Total: -4.71 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.67 Total: 15.60 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -28.35 -5.67 -34.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229702359.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.815 kcal (2) G-P(sol) polarization free energy of solvation -28.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds