Wall clock time and date at job start Tue Mar 31 2020 14:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46919 * 2 1 4 4 C 1.52993 * 109.47687 * 239.99604 * 2 1 3 5 5 C 1.50707 * 109.46957 * 60.00051 * 4 2 1 6 6 H 1.07997 * 119.99613 * 359.97438 * 5 4 2 7 7 C 1.37873 * 119.99902 * 180.02562 * 5 4 2 8 8 N 1.31519 * 119.99704 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 120.00095 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.47032 * 90.00168 * 9 7 5 11 11 H 1.48505 * 109.46920 * 209.99733 * 9 7 5 12 12 H 1.48497 * 109.47351 * 330.00137 * 9 7 5 13 13 C 1.53001 * 109.47041 * 119.99536 * 2 1 3 14 14 N 1.46502 * 109.47415 * 300.00369 * 13 2 1 15 15 C 1.39027 * 120.00102 * 179.97438 * 14 13 2 16 16 C 1.38879 * 120.17147 * 0.02562 * 15 14 13 17 17 C 1.38024 * 120.06710 * 179.97438 * 16 15 14 18 18 C 1.38570 * 120.42339 * 0.02562 * 17 16 15 19 19 C 1.50699 * 119.82709 * 179.97438 * 18 17 16 20 20 F 1.39902 * 109.46996 * 359.97438 * 19 18 17 21 21 F 1.39899 * 109.46987 * 120.00027 * 19 18 17 22 22 F 1.39897 * 109.47200 * 240.00012 * 19 18 17 23 23 C 1.37797 * 120.34495 * 359.97438 * 18 17 16 24 24 C 1.39733 * 119.91913 * 359.97438 * 23 18 17 25 25 C 1.43201 * 120.20455 * 180.27280 * 24 23 18 26 26 N 5.39005 * 72.97857 * 64.13748 * 2 1 3 27 27 H 1.08997 * 109.47185 * 300.00085 * 1 2 3 28 28 H 1.08996 * 109.46713 * 60.00652 * 1 2 3 29 29 H 1.09005 * 109.46958 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46966 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.46896 * 299.99236 * 3 2 1 32 32 H 1.08997 * 109.47261 * 59.99962 * 3 2 1 33 33 H 1.09001 * 109.47590 * 180.02562 * 4 2 1 34 34 H 1.09005 * 109.47410 * 300.00322 * 4 2 1 35 35 H 0.97003 * 119.99711 * 179.97438 * 8 7 5 36 36 H 1.08998 * 109.47345 * 180.02562 * 13 2 1 37 37 H 1.09002 * 109.46957 * 60.00057 * 13 2 1 38 38 H 0.97008 * 119.99688 * 359.97438 * 14 13 2 39 39 H 1.07991 * 119.96889 * 359.97438 * 16 15 14 40 40 H 1.08003 * 119.78738 * 180.02562 * 17 16 15 41 41 H 1.07993 * 120.04009 * 179.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5378 -0.0109 -2.4797 6 1 0.9165 0.8669 -2.3806 7 6 1.8706 -0.4823 -3.7319 8 7 1.4318 0.1373 -4.8057 9 14 2.9446 -2.0011 -3.9031 10 1 2.0861 -3.2119 -3.9479 11 1 3.7361 -1.9088 -5.1562 12 1 3.8653 -2.0898 -2.7414 13 6 2.0400 -0.7212 1.2493 14 7 1.5516 -0.0305 2.4455 15 6 1.8870 -0.5058 3.7082 16 6 2.6853 -1.6346 3.8398 17 6 3.0174 -2.1042 5.0945 18 6 2.5586 -1.4564 6.2303 19 6 2.9290 -1.9811 7.5936 20 9 3.7323 -3.1179 7.4533 21 9 3.6316 -0.9969 8.2970 22 9 1.7664 -2.3161 8.2960 23 6 1.7656 -0.3350 6.1198 24 6 1.4214 0.1535 4.8566 25 6 0.6024 1.3218 4.7346 26 7 -0.0478 2.2482 4.6377 27 1 -0.3633 0.5138 0.8899 28 1 -0.3632 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 3.1301 -0.7217 -1.2488 34 1 1.6768 -1.7490 -1.2491 35 1 1.6662 -0.1941 -5.6867 36 1 3.1300 -0.7208 1.2496 37 1 1.6766 -1.7488 1.2494 38 1 0.9941 0.7584 2.3564 39 1 3.0465 -2.1454 2.9596 40 1 3.6388 -2.9822 5.1916 41 1 1.4104 0.1658 7.0082 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229702359.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:25 Heat of formation + Delta-G solvation = -126.133754 kcal Electronic energy + Delta-G solvation = -26981.159914 eV Core-core repulsion = 22637.884789 eV Total energy + Delta-G solvation = -4343.275125 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.130 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -51.01111 -48.53470 -48.47804 -41.08818 -39.13516 -37.55408 -36.07387 -34.32926 -32.52191 -31.49517 -29.59773 -28.07133 -27.76126 -26.02152 -25.11879 -24.30534 -22.43032 -20.63972 -19.77425 -19.33411 -19.12753 -18.89269 -18.36633 -17.86084 -17.08427 -16.20893 -15.98794 -15.62823 -15.42284 -15.36543 -15.16149 -15.10901 -15.01609 -14.92230 -14.69330 -14.64217 -14.46485 -14.34147 -14.23570 -14.15596 -14.05315 -13.78158 -13.48730 -12.95505 -12.84972 -12.72966 -12.67122 -12.36431 -12.28769 -12.08061 -11.75574 -11.63540 -11.23168 -11.20045 -10.91941 -10.68661 -10.11385 -8.71853 -8.20117 -6.22015 -0.20547 0.16961 1.41258 1.43167 1.51318 1.53276 1.82744 1.84586 2.20831 2.42401 2.70119 2.75994 2.96431 3.15973 3.24533 3.58317 3.67935 3.85959 4.00954 4.03917 4.12527 4.23086 4.37174 4.58482 4.68631 4.70412 4.73540 4.88178 4.89353 5.02018 5.03726 5.05219 5.20461 5.28557 5.33740 5.39962 5.52010 5.54186 5.64808 5.76797 6.02710 6.36805 6.39625 6.46076 6.86499 7.41130 8.96192 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.019160 B = 0.002700 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.006552 B =10367.222915 C =11467.221292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.060 4.060 3 C -0.125 4.125 4 C 0.000 4.000 5 C -0.507 4.507 6 H 0.039 0.961 7 C -0.002 4.002 8 N -0.959 5.959 9 Si 0.943 3.057 10 H -0.271 1.271 11 H -0.296 1.296 12 H -0.236 1.236 13 C 0.129 3.871 14 N -0.719 5.719 15 C 0.295 3.705 16 C -0.196 4.196 17 C 0.015 3.985 18 C -0.258 4.258 19 C 0.519 3.481 20 F -0.177 7.177 21 F -0.184 7.184 22 F -0.184 7.184 23 C 0.037 3.963 24 C -0.132 4.132 25 C 0.276 3.724 26 N -0.465 5.465 27 H 0.048 0.952 28 H 0.036 0.964 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.036 0.964 32 H 0.048 0.952 33 H 0.027 0.973 34 H 0.025 0.975 35 H 0.261 0.739 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.400 0.600 39 H 0.162 0.838 40 H 0.165 0.835 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.842 -8.216 25.693 27.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.060 4.060 3 C -0.182 4.182 4 C -0.037 4.037 5 C -0.546 4.546 6 H 0.057 0.943 7 C -0.198 4.198 8 N -0.601 5.601 9 Si 0.768 3.232 10 H -0.196 1.196 11 H -0.223 1.223 12 H -0.159 1.159 13 C 0.006 3.994 14 N -0.341 5.341 15 C 0.181 3.819 16 C -0.218 4.218 17 C -0.004 4.004 18 C -0.262 4.262 19 C 0.465 3.535 20 F -0.159 7.159 21 F -0.165 7.165 22 F -0.166 7.166 23 C 0.016 3.984 24 C -0.142 4.142 25 C -0.038 4.038 26 N -0.142 5.142 27 H 0.067 0.933 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.045 0.955 34 H 0.043 0.957 35 H 0.070 0.930 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.236 0.764 39 H 0.179 0.821 40 H 0.183 0.817 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 4.914 -6.887 25.172 26.556 hybrid contribution 0.047 -0.119 -0.713 0.725 sum 4.961 -7.005 24.459 25.922 Atomic orbital electron populations 1.21705 0.95070 1.01456 1.00028 1.20557 0.95599 0.95738 0.94121 1.21700 1.00786 0.95722 1.00027 1.19544 0.96520 0.95651 0.92025 1.21427 1.30270 1.12164 0.90700 0.94253 1.25991 0.97639 1.00450 0.95678 1.70086 1.48349 1.43046 0.98570 0.85760 0.79656 0.79556 0.78256 1.19600 1.22255 1.15896 1.21727 0.99760 0.96277 0.81673 1.45213 1.54074 1.31794 1.02997 1.18088 0.89119 0.91004 0.83727 1.20831 1.04047 0.97654 0.99298 1.21162 0.92554 0.97004 0.89717 1.19457 1.11678 1.03050 0.92008 1.18131 0.74260 0.75196 0.85882 1.93160 1.74387 1.52468 1.95864 1.93212 1.79639 1.62411 1.81288 1.93211 1.49358 1.92653 1.81333 1.20624 0.90098 0.91706 0.95979 1.15259 1.09282 0.96077 0.93545 1.25688 0.92340 0.92493 0.93263 1.81322 1.12415 1.12786 1.07701 0.93266 0.94476 0.92525 0.92544 0.94458 0.93276 0.95474 0.95662 0.92996 0.89636 0.89579 0.76377 0.82071 0.81728 0.83144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.06 8.05 71.98 0.58 -3.48 16 2 C -0.06 -1.86 0.54 -52.18 -0.03 -1.89 16 3 C -0.12 -4.05 8.05 71.98 0.58 -3.47 16 4 C 0.00 0.02 3.11 29.85 0.09 0.11 16 5 C -0.51 -26.42 8.20 25.60 0.21 -26.21 16 6 H 0.04 2.30 5.92 -2.91 -0.02 2.28 16 7 C 0.00 -0.11 5.47 84.65 0.46 0.35 16 8 N -0.96 -58.47 13.96 21.45 0.30 -58.17 16 9 Si 0.94 41.27 27.47 68.60 1.88 43.16 16 10 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 11 H -0.30 -13.23 7.11 99.48 0.71 -12.52 16 12 H -0.24 -9.10 6.54 99.48 0.65 -8.45 16 13 C 0.13 2.77 3.80 86.38 0.33 3.10 16 14 N -0.72 -14.34 5.04 -338.73 -1.71 -16.05 16 15 C 0.29 4.96 6.66 38.67 0.26 5.22 16 16 C -0.20 -2.47 9.29 22.37 0.21 -2.26 16 17 C 0.02 0.17 9.41 22.30 0.21 0.38 16 18 C -0.26 -3.40 5.37 -19.89 -0.11 -3.51 16 19 C 0.52 7.35 3.31 71.24 0.24 7.59 16 20 F -0.18 -2.47 15.95 44.97 0.72 -1.75 16 21 F -0.18 -2.91 17.23 44.97 0.77 -2.14 16 22 F -0.18 -2.91 17.23 44.97 0.77 -2.14 16 23 C 0.04 0.53 9.28 22.53 0.21 0.73 16 24 C -0.13 -2.30 5.76 -21.15 -0.12 -2.43 16 25 C 0.28 6.20 14.09 88.33 1.24 7.45 16 26 N -0.47 -12.88 18.54 19.00 0.35 -12.53 16 27 H 0.05 1.38 6.86 -2.39 -0.02 1.36 16 28 H 0.04 1.46 6.62 -2.39 -0.02 1.45 16 29 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 30 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.04 1.47 6.62 -2.39 -0.02 1.45 16 32 H 0.05 1.38 6.86 -2.39 -0.02 1.36 16 33 H 0.03 1.04 7.20 -2.39 -0.02 1.02 16 34 H 0.03 0.95 7.57 -2.38 -0.02 0.94 16 35 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 36 H 0.09 1.62 7.94 -2.39 -0.02 1.60 16 37 H 0.09 1.62 7.94 -2.39 -0.02 1.60 16 38 H 0.40 8.99 5.02 -92.70 -0.47 8.52 16 39 H 0.16 1.56 6.72 -2.92 -0.02 1.54 16 40 H 0.17 1.09 7.13 -2.91 -0.02 1.07 16 41 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 Total: -1.00 -64.07 351.62 8.03 -56.04 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: 0.57 Total: 11.88 kcal Atomic # 6 Polarization: -22.67 SS G_CDS: 4.36 Total: -18.31 kcal Atomic # 7 Polarization: -85.69 SS G_CDS: -1.06 Total: -86.75 kcal Atomic # 9 Polarization: -8.29 SS G_CDS: 2.27 Total: -6.02 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 1.88 Total: 43.16 kcal Total: -64.07 8.03 -56.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229702359.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.095 kcal (2) G-P(sol) polarization free energy of solvation -64.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds