Wall clock time and date at job start Tue Mar 31 2020 15:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47065 * 2 1 4 4 N 1.46501 * 109.47079 * 240.00002 * 2 1 3 5 5 C 1.34382 * 125.73395 * 84.71677 * 4 2 1 6 6 C 1.38385 * 107.34786 * 179.84426 * 5 4 2 7 7 C 1.46864 * 126.44888 * 180.16109 * 6 5 4 8 8 C 1.35297 * 120.00128 * 134.57234 * 7 6 5 9 9 C 1.41640 * 119.99578 * 347.38913 * 8 7 6 10 10 O 1.21819 * 120.00303 * 353.37274 * 9 8 7 11 11 C 1.47717 * 119.99878 * 173.37543 * 9 8 7 12 12 C 1.39777 * 120.07224 * 359.72555 * 11 9 8 13 13 C 1.37654 * 119.92031 * 179.81231 * 12 11 9 14 14 C 1.39150 * 120.07672 * 0.43912 * 13 12 11 15 15 O 1.35565 * 119.92458 * 179.76908 * 14 13 12 16 16 C 1.34786 * 116.99959 * 174.22171 * 15 14 13 17 17 H 1.07996 * 120.00105 * 5.10231 * 16 15 14 18 18 C 1.38741 * 120.00164 * 185.10400 * 16 15 14 19 19 N 1.31496 * 119.99856 * 359.97438 * 18 16 15 20 20 Si 1.86791 * 120.00149 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.47468 * 59.99724 * 20 18 16 22 22 H 1.48501 * 109.47281 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.47174 * 299.99926 * 20 18 16 24 24 C 1.39149 * 120.14936 * 359.79062 * 14 13 12 25 25 C 1.37652 * 120.07656 * 359.97438 * 24 14 13 26 26 C 1.41482 * 107.09331 * 0.41405 * 6 5 4 27 27 N 1.30421 * 108.03530 * 359.74528 * 26 6 5 28 28 H 1.08995 * 109.47052 * 299.99478 * 1 2 3 29 29 H 1.08997 * 109.46842 * 60.00321 * 1 2 3 30 30 H 1.09000 * 109.46888 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47125 * 120.00387 * 2 1 3 32 32 H 1.08995 * 109.46759 * 60.00343 * 3 2 1 33 33 H 1.08999 * 109.46732 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.47029 * 299.99565 * 3 2 1 35 35 H 1.07995 * 126.32181 * 0.02562 * 5 4 2 36 36 H 1.08005 * 120.00042 * 314.56171 * 7 6 5 37 37 H 1.07995 * 120.00456 * 167.39617 * 8 7 6 38 38 H 1.07998 * 120.03941 * 359.97438 * 12 11 9 39 39 H 1.08002 * 119.96346 * 180.18812 * 13 12 11 40 40 H 0.96995 * 120.00632 * 180.02562 * 19 18 16 41 41 H 1.07997 * 119.96246 * 179.97438 * 24 14 13 42 42 H 1.08000 * 120.03583 * 179.97438 * 25 24 14 43 43 H 1.07994 * 125.98046 * 179.70831 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1852 -0.1367 -2.4091 6 6 2.6642 -1.1245 -3.2515 7 6 2.9953 -0.9729 -4.6743 8 6 4.1476 -1.4900 -5.1596 9 6 5.1536 -1.9374 -4.2685 10 8 5.0351 -1.7472 -3.0710 11 6 6.3464 -2.6344 -4.7911 12 6 6.4812 -2.8585 -6.1643 13 6 7.5959 -3.5049 -6.6483 14 6 8.5836 -3.9433 -5.7716 15 8 9.6779 -4.5838 -6.2512 16 6 10.6522 -4.8763 -5.3670 17 1 10.5057 -4.6759 -4.3160 18 6 11.8436 -5.4349 -5.8071 19 7 12.0219 -5.6794 -7.0867 20 14 13.1936 -5.8410 -4.5817 21 1 12.6831 -6.8206 -3.5892 22 1 14.3551 -6.4243 -5.2999 23 1 13.6157 -4.6013 -3.8814 24 6 8.4503 -3.7262 -4.4036 25 6 7.3404 -3.0761 -3.9132 26 6 2.7692 -2.3094 -2.4855 27 7 2.3836 -2.0394 -1.2692 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9562 0.8900 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.9855 0.8905 -2.6761 36 1 2.3189 -0.4488 -5.3333 37 1 4.3003 -1.5616 -6.2263 38 1 5.7129 -2.5224 -6.8448 39 1 7.7022 -3.6757 -7.7094 40 1 12.8545 -6.0703 -7.3945 41 1 9.2184 -4.0681 -3.7258 42 1 7.2374 -2.9083 -2.8513 43 1 3.1087 -3.2694 -2.8452 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255675437.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:20 Heat of formation + Delta-G solvation = 62.876689 kcal Electronic energy + Delta-G solvation = -25835.003282 eV Core-core repulsion = 22041.781006 eV Total energy + Delta-G solvation = -3793.222277 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.20051 -39.49468 -38.53486 -36.28318 -35.88095 -33.41884 -32.47068 -30.42694 -30.31285 -29.90555 -28.52278 -27.72436 -25.63977 -24.42646 -22.91987 -22.07105 -21.59485 -20.36834 -20.02579 -18.71182 -17.96482 -17.40908 -16.61109 -16.13545 -15.47122 -15.05688 -14.84739 -14.61994 -14.45581 -14.07004 -14.02062 -13.85982 -13.53010 -13.28394 -13.23742 -12.99481 -12.88231 -12.69274 -12.61112 -12.47243 -12.12775 -11.79759 -11.74616 -11.56458 -11.47248 -11.31075 -10.84777 -10.73022 -10.59930 -10.50806 -9.76894 -9.46062 -9.38428 -9.08199 -8.95568 -8.29131 -7.78587 -7.33173 -6.60822 -4.16660 0.88034 1.81423 2.16249 2.23325 2.41215 3.06358 3.07610 3.10925 3.11372 3.67862 3.86499 4.16569 4.47620 4.61924 4.64963 4.66730 4.79053 4.85112 4.98079 5.02246 5.10305 5.14410 5.22681 5.25174 5.36816 5.42852 5.55494 5.65945 5.68859 5.70908 5.77740 5.84763 5.93564 6.11474 6.25697 6.38420 6.55040 6.61287 6.72701 6.82954 6.97781 7.02359 7.08404 7.31499 7.32010 7.70903 7.80571 7.85088 8.29059 8.84121 9.51143 10.55821 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.024687 B = 0.002169 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.923340 B =12907.048650 C =13681.398556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.155 3.845 3 C -0.165 4.165 4 N -0.365 5.365 5 C 0.070 3.930 6 C -0.216 4.216 7 C 0.015 3.985 8 C -0.237 4.237 9 C 0.423 3.577 10 O -0.475 6.475 11 C -0.266 4.266 12 C -0.030 4.030 13 C -0.206 4.206 14 C 0.174 3.826 15 O -0.162 6.162 16 C -0.394 4.394 17 H 0.097 0.903 18 C 0.042 3.958 19 N -0.853 5.853 20 Si 0.944 3.056 21 H -0.268 1.268 22 H -0.276 1.276 23 H -0.268 1.268 24 C -0.250 4.250 25 C -0.011 4.011 26 C 0.114 3.886 27 N -0.306 5.306 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.101 0.899 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.170 0.830 36 H 0.125 0.875 37 H 0.132 0.868 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.274 0.726 41 H 0.130 0.870 42 H 0.116 0.884 43 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.591 12.571 8.335 25.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.053 3.947 3 C -0.223 4.223 4 N -0.146 5.146 5 C -0.077 4.077 6 C -0.227 4.227 7 C -0.005 4.005 8 C -0.256 4.256 9 C 0.309 3.691 10 O -0.357 6.357 11 C -0.268 4.268 12 C -0.049 4.049 13 C -0.225 4.225 14 C 0.117 3.883 15 O -0.063 6.063 16 C -0.469 4.469 17 H 0.114 0.886 18 C -0.164 4.164 19 N -0.486 5.486 20 Si 0.768 3.232 21 H -0.193 1.193 22 H -0.201 1.201 23 H -0.193 1.193 24 C -0.269 4.269 25 C -0.030 4.030 26 C -0.074 4.074 27 N -0.125 5.125 28 H 0.094 0.906 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.119 0.881 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.187 0.813 36 H 0.143 0.857 37 H 0.149 0.851 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.084 0.916 41 H 0.148 0.852 42 H 0.134 0.866 43 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -20.600 12.066 9.867 25.832 hybrid contribution 1.036 0.105 -0.473 1.144 sum -19.564 12.170 9.395 24.882 Atomic orbital electron populations 1.22238 0.93797 1.03260 1.02882 1.21214 0.94570 0.92732 0.86196 1.22201 1.02650 0.94038 1.03422 1.48403 1.50709 1.07544 1.07980 1.22740 1.00268 0.98905 0.85819 1.19288 1.13958 0.94124 0.95353 1.21765 0.94479 0.92232 0.91973 1.22645 0.95704 1.05969 1.01288 1.19050 0.85650 0.76183 0.88242 1.90655 1.78308 1.48890 1.17895 1.19893 0.99760 1.13014 0.94157 1.20854 0.95493 0.94620 0.93925 1.20165 0.95577 1.07708 0.99083 1.19633 0.88012 0.88686 0.91961 1.83899 1.23163 1.61674 1.37606 1.21430 0.93004 1.42481 0.90000 0.88612 1.25384 0.97669 0.96175 0.97184 1.69996 1.26241 1.38659 1.13695 0.85723 0.79047 0.79268 0.79148 1.19258 1.20105 1.19263 1.21120 1.01145 1.09220 0.95409 1.20902 0.91326 0.91986 0.98758 1.23759 0.95063 0.98798 0.89749 1.77048 1.22113 0.92797 1.20535 0.90612 0.91979 0.91612 0.88071 0.90082 0.91285 0.91614 0.81296 0.85735 0.85068 0.86241 0.86080 0.91593 0.85222 0.86566 0.80769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.00 9.52 37.16 0.35 -0.65 16 2 C 0.15 1.25 3.91 -67.93 -0.27 0.98 16 3 C -0.16 -0.98 8.83 37.16 0.33 -0.65 16 4 N -0.37 -4.30 3.50 -54.19 -0.19 -4.49 16 5 C 0.07 0.77 10.62 -16.38 -0.17 0.59 16 6 C -0.22 -2.78 4.46 -105.12 -0.47 -3.25 16 7 C 0.02 0.17 10.14 -37.14 -0.38 -0.21 16 8 C -0.24 -3.01 9.33 -39.33 -0.37 -3.38 16 9 C 0.42 7.00 6.52 -34.41 -0.22 6.78 16 10 O -0.48 -8.86 12.37 5.08 0.06 -8.80 16 11 C -0.27 -4.89 5.88 -104.87 -0.62 -5.50 16 12 C -0.03 -0.53 9.42 -39.22 -0.37 -0.90 16 13 C -0.21 -4.19 9.97 -39.46 -0.39 -4.59 16 14 C 0.17 4.12 6.66 -38.90 -0.26 3.86 16 15 O -0.16 -4.50 9.74 0.74 0.01 -4.49 16 16 C -0.39 -10.71 9.48 30.92 0.29 -10.41 16 17 H 0.10 2.42 5.19 -52.49 -0.27 2.14 16 18 C 0.04 1.12 5.49 -17.51 -0.10 1.02 16 19 N -0.85 -24.18 13.67 55.48 0.76 -23.43 16 20 Si 0.94 19.98 29.55 -169.99 -5.02 14.96 16 21 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 22 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 23 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 24 C -0.25 -5.50 9.15 -39.46 -0.36 -5.86 16 25 C -0.01 -0.22 9.58 -39.22 -0.38 -0.60 16 26 C 0.11 1.68 9.12 -16.92 -0.15 1.53 16 27 N -0.31 -4.59 12.49 30.90 0.39 -4.20 16 28 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.33 7.13 -51.93 -0.37 -0.04 16 35 H 0.17 1.26 7.24 -52.49 -0.38 0.88 16 36 H 0.12 0.95 8.06 -52.48 -0.42 0.52 16 37 H 0.13 1.37 6.26 -52.49 -0.33 1.04 16 38 H 0.12 1.60 6.21 -52.49 -0.33 1.27 16 39 H 0.12 2.32 8.06 -52.49 -0.42 1.89 16 40 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 41 H 0.13 2.84 5.62 -52.49 -0.30 2.54 16 42 H 0.12 2.23 7.64 -52.49 -0.40 1.82 16 43 H 0.18 2.52 7.94 -52.49 -0.42 2.10 16 LS Contribution 367.23 15.07 5.53 5.53 Total: -1.00 -33.09 367.23 -7.30 -40.39 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -5.31 Total: 5.77 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: -3.53 Total: -21.23 kcal Atomic # 7 Polarization: -33.08 SS G_CDS: 0.95 Total: -32.12 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: 0.07 Total: -13.29 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.09 -7.30 -40.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255675437.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.263 kcal (2) G-P(sol) polarization free energy of solvation -33.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds