Wall clock time and date at job start Tue Mar 31 2020 15:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47065 * 2 1 4 4 N 1.46501 * 109.47079 * 240.00002 * 2 1 3 5 5 C 1.34382 * 125.73395 * 84.71677 * 4 2 1 6 6 C 1.38385 * 107.34786 * 179.84426 * 5 4 2 7 7 C 1.46864 * 126.44888 * 180.16109 * 6 5 4 8 8 C 1.35297 * 120.00128 * 134.57234 * 7 6 5 9 9 C 1.41640 * 119.99578 * 347.38913 * 8 7 6 10 10 O 1.21819 * 120.00303 * 353.37274 * 9 8 7 11 11 C 1.47717 * 119.99878 * 173.37543 * 9 8 7 12 12 C 1.39777 * 120.07224 * 359.72555 * 11 9 8 13 13 C 1.37654 * 119.92031 * 179.81231 * 12 11 9 14 14 C 1.39150 * 120.07672 * 0.43912 * 13 12 11 15 15 O 1.35565 * 119.92458 * 179.76908 * 14 13 12 16 16 C 1.34786 * 116.99959 * 174.22171 * 15 14 13 17 17 H 1.07996 * 120.00105 * 5.10231 * 16 15 14 18 18 C 1.38741 * 120.00164 * 185.10400 * 16 15 14 19 19 N 1.31496 * 119.99856 * 359.97438 * 18 16 15 20 20 Si 1.86791 * 120.00149 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.47468 * 59.99724 * 20 18 16 22 22 H 1.48501 * 109.47281 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.47174 * 299.99926 * 20 18 16 24 24 C 1.39149 * 120.14936 * 359.79062 * 14 13 12 25 25 C 1.37652 * 120.07656 * 359.97438 * 24 14 13 26 26 C 1.41482 * 107.09331 * 0.41405 * 6 5 4 27 27 N 1.30421 * 108.03530 * 359.74528 * 26 6 5 28 28 H 1.08995 * 109.47052 * 299.99478 * 1 2 3 29 29 H 1.08997 * 109.46842 * 60.00321 * 1 2 3 30 30 H 1.09000 * 109.46888 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47125 * 120.00387 * 2 1 3 32 32 H 1.08995 * 109.46759 * 60.00343 * 3 2 1 33 33 H 1.08999 * 109.46732 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.47029 * 299.99565 * 3 2 1 35 35 H 1.07995 * 126.32181 * 0.02562 * 5 4 2 36 36 H 1.08005 * 120.00042 * 314.56171 * 7 6 5 37 37 H 1.07995 * 120.00456 * 167.39617 * 8 7 6 38 38 H 1.07998 * 120.03941 * 359.97438 * 12 11 9 39 39 H 1.08002 * 119.96346 * 180.18812 * 13 12 11 40 40 H 0.96995 * 120.00632 * 180.02562 * 19 18 16 41 41 H 1.07997 * 119.96246 * 179.97438 * 24 14 13 42 42 H 1.08000 * 120.03583 * 179.97438 * 25 24 14 43 43 H 1.07994 * 125.98046 * 179.70831 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1852 -0.1367 -2.4091 6 6 2.6642 -1.1245 -3.2515 7 6 2.9953 -0.9729 -4.6743 8 6 4.1476 -1.4900 -5.1596 9 6 5.1536 -1.9374 -4.2685 10 8 5.0351 -1.7472 -3.0710 11 6 6.3464 -2.6344 -4.7911 12 6 6.4812 -2.8585 -6.1643 13 6 7.5959 -3.5049 -6.6483 14 6 8.5836 -3.9433 -5.7716 15 8 9.6779 -4.5838 -6.2512 16 6 10.6522 -4.8763 -5.3670 17 1 10.5057 -4.6759 -4.3160 18 6 11.8436 -5.4349 -5.8071 19 7 12.0219 -5.6794 -7.0867 20 14 13.1936 -5.8410 -4.5817 21 1 12.6831 -6.8206 -3.5892 22 1 14.3551 -6.4243 -5.2999 23 1 13.6157 -4.6013 -3.8814 24 6 8.4503 -3.7262 -4.4036 25 6 7.3404 -3.0761 -3.9132 26 6 2.7692 -2.3094 -2.4855 27 7 2.3836 -2.0394 -1.2692 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9562 0.8900 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.9855 0.8905 -2.6761 36 1 2.3189 -0.4488 -5.3333 37 1 4.3003 -1.5616 -6.2263 38 1 5.7129 -2.5224 -6.8448 39 1 7.7022 -3.6757 -7.7094 40 1 12.8545 -6.0703 -7.3945 41 1 9.2184 -4.0681 -3.7258 42 1 7.2374 -2.9083 -2.8513 43 1 3.1087 -3.2694 -2.8452 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255675437.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:19 Heat of formation + Delta-G solvation = 43.383440 kcal Electronic energy + Delta-G solvation = -25835.848573 eV Core-core repulsion = 22041.781006 eV Total energy + Delta-G solvation = -3794.067567 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.14441 -41.05150 -40.06529 -37.85965 -36.68759 -34.43852 -34.37805 -31.96633 -31.41811 -31.21551 -29.63560 -28.21190 -27.53585 -25.65816 -23.82663 -23.64796 -22.93754 -21.58748 -20.83226 -20.19718 -19.44300 -18.95001 -17.83385 -17.36035 -16.47843 -16.30127 -16.25081 -15.88003 -15.71453 -15.57996 -15.42885 -15.16992 -14.74712 -14.55851 -14.39863 -14.21922 -13.89796 -13.76969 -13.56404 -13.38578 -13.14451 -13.09138 -13.01422 -12.93310 -12.48579 -12.39509 -12.30212 -12.16517 -12.09635 -11.58318 -11.27437 -10.86033 -10.75050 -10.44178 -10.24331 -9.90631 -9.09526 -8.74734 -8.54702 -6.21861 -0.29411 0.55782 0.58096 1.09693 1.33699 1.43267 1.49333 1.63100 2.02676 2.13602 2.37918 2.88827 3.20393 3.37738 3.51868 3.59966 3.90853 3.95188 3.99251 4.02516 4.08407 4.09973 4.33909 4.42008 4.51150 4.59748 4.63403 4.67482 4.77152 4.78038 4.82885 4.86923 4.92762 5.00237 5.07037 5.17033 5.17907 5.22012 5.41094 5.48654 5.51544 5.60623 5.71126 5.83691 5.94403 6.08011 6.23002 6.82841 6.89276 6.98627 7.64449 8.66815 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.024687 B = 0.002169 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.923340 B =12907.048650 C =13681.398556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.143 3.857 3 C -0.158 4.158 4 N -0.364 5.364 5 C 0.084 3.916 6 C -0.247 4.247 7 C 0.054 3.946 8 C -0.264 4.264 9 C 0.426 3.574 10 O -0.500 6.500 11 C -0.253 4.253 12 C -0.011 4.011 13 C -0.211 4.211 14 C 0.142 3.858 15 O -0.214 6.214 16 C -0.421 4.421 17 H 0.101 0.899 18 C -0.015 4.015 19 N -0.909 5.909 20 Si 1.017 2.983 21 H -0.259 1.259 22 H -0.267 1.267 23 H -0.258 1.258 24 C -0.258 4.258 25 C -0.023 4.023 26 C 0.095 3.905 27 N -0.347 5.347 28 H 0.101 0.899 29 H 0.071 0.929 30 H 0.045 0.955 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.049 0.951 34 H 0.082 0.918 35 H 0.211 0.789 36 H 0.173 0.827 37 H 0.162 0.838 38 H 0.174 0.826 39 H 0.131 0.869 40 H 0.277 0.723 41 H 0.120 0.880 42 H 0.120 0.880 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.985 15.775 8.730 30.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.042 3.958 3 C -0.216 4.216 4 N -0.145 5.145 5 C -0.064 4.064 6 C -0.258 4.258 7 C 0.034 3.966 8 C -0.283 4.283 9 C 0.314 3.686 10 O -0.383 6.383 11 C -0.255 4.255 12 C -0.028 4.028 13 C -0.230 4.230 14 C 0.089 3.911 15 O -0.118 6.118 16 C -0.496 4.496 17 H 0.119 0.881 18 C -0.214 4.214 19 N -0.545 5.545 20 Si 0.836 3.164 21 H -0.183 1.183 22 H -0.192 1.192 23 H -0.183 1.183 24 C -0.277 4.277 25 C -0.041 4.041 26 C -0.092 4.092 27 N -0.167 5.167 28 H 0.119 0.881 29 H 0.090 0.910 30 H 0.064 0.936 31 H 0.107 0.893 32 H 0.124 0.876 33 H 0.068 0.932 34 H 0.101 0.899 35 H 0.228 0.772 36 H 0.190 0.810 37 H 0.179 0.821 38 H 0.191 0.809 39 H 0.149 0.851 40 H 0.086 0.914 41 H 0.138 0.862 42 H 0.138 0.862 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -24.051 15.289 10.294 30.301 hybrid contribution 1.557 -0.618 -0.375 1.717 sum -22.493 14.671 9.919 28.628 Atomic orbital electron populations 1.22182 0.91986 1.02510 1.04607 1.21595 0.95975 0.93588 0.84612 1.22194 1.01375 0.92525 1.05509 1.48793 1.49680 1.06598 1.09404 1.23393 0.97915 1.00167 0.84926 1.19648 1.15420 0.93902 0.96843 1.22242 0.93819 0.89186 0.91327 1.22577 0.95518 1.08394 1.01839 1.19344 0.85602 0.75226 0.88474 1.90675 1.78661 1.49792 1.19221 1.20473 0.99669 1.10734 0.94613 1.21341 0.95160 0.92179 0.94155 1.20531 0.95623 1.07467 0.99412 1.20201 0.88132 0.89528 0.93233 1.83882 1.24671 1.64877 1.38408 1.21825 0.93847 1.43495 0.90469 0.88148 1.26588 0.99849 0.95745 0.99260 1.70120 1.27271 1.41282 1.15877 0.84671 0.75720 0.79377 0.76635 1.18300 1.19165 1.18280 1.21146 1.01798 1.09787 0.94987 1.21044 0.91394 0.92211 0.99499 1.23766 0.95686 0.99416 0.90334 1.76961 1.23516 0.95158 1.21093 0.88084 0.91015 0.93575 0.89261 0.87627 0.93175 0.89950 0.77199 0.81007 0.82088 0.80894 0.85060 0.91431 0.86200 0.86196 0.81980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.52 71.98 0.69 -0.79 16 2 C 0.14 2.00 3.91 44.99 0.18 2.17 16 3 C -0.16 -1.34 8.83 71.98 0.64 -0.70 16 4 N -0.36 -7.88 3.50 -325.36 -1.14 -9.01 16 5 C 0.08 1.55 10.62 84.34 0.90 2.44 16 6 C -0.25 -5.60 4.46 -20.19 -0.09 -5.69 16 7 C 0.05 0.92 10.14 23.85 0.24 1.16 16 8 C -0.26 -5.53 9.33 22.43 0.21 -5.32 16 9 C 0.43 13.09 6.52 25.62 0.17 13.25 16 10 O -0.50 -18.04 12.37 -4.73 -0.06 -18.10 16 11 C -0.25 -8.87 5.88 -20.03 -0.12 -8.99 16 12 C -0.01 -0.34 9.42 22.50 0.21 -0.12 16 13 C -0.21 -8.54 9.97 22.35 0.22 -8.31 16 14 C 0.14 7.02 6.66 22.71 0.15 7.17 16 15 O -0.21 -12.63 9.74 -20.26 -0.20 -12.83 16 16 C -0.42 -24.36 9.48 67.94 0.64 -23.71 16 17 H 0.10 5.42 5.19 -2.91 -0.02 5.40 16 18 C -0.02 -0.84 5.49 84.86 0.47 -0.38 16 19 N -0.91 -54.50 13.67 21.63 0.30 -54.21 16 20 Si 1.02 42.56 29.55 68.60 2.03 44.59 16 21 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 22 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 23 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 24 C -0.26 -11.88 9.15 22.35 0.20 -11.67 16 25 C -0.02 -0.93 9.58 22.50 0.22 -0.72 16 26 C 0.09 2.73 9.12 85.70 0.78 3.51 16 27 N -0.35 -10.34 12.49 -56.16 -0.70 -11.04 16 28 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.08 0.44 7.13 -2.39 -0.02 0.42 16 35 H 0.21 1.93 7.24 -2.91 -0.02 1.91 16 36 H 0.17 1.36 8.06 -2.91 -0.02 1.33 16 37 H 0.16 2.36 6.26 -2.91 -0.02 2.34 16 38 H 0.17 3.69 6.21 -2.91 -0.02 3.67 16 39 H 0.13 4.99 8.06 -2.91 -0.02 4.96 16 40 H 0.28 15.15 8.31 -92.71 -0.77 14.38 16 41 H 0.12 5.62 5.62 -2.91 -0.02 5.61 16 42 H 0.12 4.70 7.64 -2.91 -0.02 4.68 16 43 H 0.16 4.79 7.94 -2.91 -0.02 4.77 16 Total: -1.00 -79.85 367.23 6.96 -72.88 By element: Atomic # 1 Polarization: 23.38 SS G_CDS: 1.04 Total: 24.42 kcal Atomic # 6 Polarization: -42.40 SS G_CDS: 5.70 Total: -36.70 kcal Atomic # 7 Polarization: -72.72 SS G_CDS: -1.54 Total: -74.26 kcal Atomic # 8 Polarization: -30.67 SS G_CDS: -0.26 Total: -30.93 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -79.85 6.96 -72.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255675437.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.267 kcal (2) G-P(sol) polarization free energy of solvation -79.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds