Wall clock time and date at job start Tue Mar 31 2020 14:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47191 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47392 * 31.27901 * 3 2 1 5 5 O 1.42904 * 109.47377 * 179.97438 * 4 3 2 6 6 C 1.35711 * 117.00220 * 180.02562 * 5 4 3 7 7 C 1.39002 * 119.90955 * 0.29057 * 6 5 4 8 8 C 1.37701 * 120.08650 * 180.25938 * 7 6 5 9 9 C 1.39741 * 119.90999 * 359.45180 * 8 7 6 10 10 C 1.47598 * 120.08325 * 180.29903 * 9 8 7 11 11 O 1.21585 * 120.00320 * 330.13841 * 10 9 8 12 12 N 1.34782 * 119.99755 * 150.14778 * 10 9 8 13 13 C 1.46504 * 119.99756 * 6.16070 * 12 10 9 14 14 C 1.50696 * 109.47361 * 98.23590 * 13 12 10 15 15 H 1.08001 * 119.99522 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00414 * 180.02562 * 14 13 12 17 17 N 1.31507 * 120.00305 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 119.99779 * 359.97438 * 16 14 13 19 19 H 1.48493 * 109.46888 * 90.00088 * 18 16 14 20 20 H 1.48494 * 109.47276 * 210.00517 * 18 16 14 21 21 H 1.48501 * 109.47018 * 330.00327 * 18 16 14 22 22 C 1.46498 * 120.00203 * 186.16425 * 12 10 9 23 23 C 1.52997 * 109.47275 * 91.20031 * 22 12 10 24 24 C 1.47202 * 109.47046 * 180.02562 * 23 22 12 25 25 N 9.61873 * 142.94707 * 202.92369 * 6 1 2 26 26 C 1.39735 * 119.82439 * 0.27389 * 9 8 7 27 27 C 1.37702 * 119.91066 * 0.02562 * 26 9 8 28 28 H 4.44644 * 5.63264 * 180.02562 * 4 1 2 29 29 H 1.08999 * 109.47208 * 271.27880 * 3 2 1 30 30 H 1.08996 * 109.47273 * 151.28165 * 3 2 1 31 31 H 1.08999 * 109.46962 * 59.99828 * 4 3 2 32 32 H 1.09002 * 109.47019 * 299.99927 * 4 3 2 33 33 H 1.07998 * 119.95622 * 0.02562 * 7 6 5 34 34 H 1.07998 * 120.04767 * 179.72222 * 8 7 6 35 35 H 1.09002 * 109.46816 * 218.23525 * 13 12 10 36 36 H 1.08999 * 109.47366 * 338.23196 * 13 12 10 37 37 H 0.96996 * 120.00015 * 180.02562 * 17 16 14 38 38 H 1.09003 * 109.47183 * 211.19990 * 22 12 10 39 39 H 1.09003 * 109.46815 * 331.19838 * 22 12 10 40 40 H 1.09003 * 109.46981 * 300.00082 * 23 22 12 41 41 H 1.08989 * 109.47212 * 60.00221 * 23 22 12 42 42 H 1.07995 * 120.04663 * 180.02562 * 26 9 8 43 43 H 1.07992 * 119.95793 * 180.02562 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.2319 -0.7489 5 8 4.5856 -1.2309 -0.7494 6 6 5.2022 -2.2637 -1.3778 7 6 4.4438 -3.2562 -1.9877 8 6 5.0657 -4.3086 -2.6216 9 6 6.4611 -4.3720 -2.6612 10 6 7.1316 -5.4949 -3.3454 11 8 6.5947 -6.5846 -3.3948 12 7 8.3393 -5.3122 -3.9153 13 6 9.0468 -4.0413 -3.7409 14 6 10.0650 -4.1803 -2.6387 15 1 10.1739 -5.1212 -2.1197 16 6 10.8569 -3.1062 -2.2921 17 7 11.7458 -3.2276 -1.3305 18 14 10.6681 -1.4786 -3.1893 19 1 9.6591 -0.6425 -2.4908 20 1 11.9724 -0.7690 -3.2071 21 1 10.2227 -1.7307 -4.5833 22 6 8.9443 -6.3845 -4.7092 23 6 8.5414 -6.2225 -6.1762 24 6 9.1489 -7.3004 -6.9738 25 7 9.6194 -8.1297 -7.5906 26 6 7.2199 -3.3693 -2.0518 27 6 6.5904 -2.3234 -1.4145 28 1 -1.0498 -0.0002 -0.0003 29 1 3.0093 -0.0221 1.0274 30 1 3.0089 0.9020 -0.4938 31 1 2.7932 -1.2091 -1.7763 32 1 2.7936 -2.1333 -0.2551 33 1 3.3654 -3.2038 -1.9610 34 1 4.4758 -5.0817 -3.0914 35 1 9.5512 -3.7758 -4.6700 36 1 8.3325 -3.2606 -3.4793 37 1 12.3026 -2.4718 -1.0865 38 1 10.0297 -6.3325 -4.6227 39 1 8.5963 -7.3497 -4.3412 40 1 7.4560 -6.2745 -6.2628 41 1 8.8894 -5.2575 -6.5442 42 1 8.2985 -3.4144 -2.0806 43 1 7.1761 -1.5478 -0.9436 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294340496.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:37 Heat of formation + Delta-G solvation = 57.943694 kcal Electronic energy + Delta-G solvation = -26398.019281 eV Core-core repulsion = 22604.583093 eV Total energy + Delta-G solvation = -3793.436187 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.38059 -39.39885 -37.17610 -36.60774 -35.53205 -34.81297 -33.08028 -31.78010 -31.12638 -30.32320 -29.25365 -28.14564 -24.76649 -24.45161 -22.97065 -22.10363 -21.69135 -19.10059 -18.71455 -17.79335 -17.66423 -17.03881 -16.79722 -16.41002 -16.02066 -15.55142 -14.84447 -14.67496 -14.46128 -14.27451 -14.09887 -13.97743 -13.77983 -13.55689 -13.30734 -13.10078 -12.70191 -12.58780 -12.43487 -12.26448 -12.14729 -12.11336 -11.73743 -11.31217 -11.12530 -10.99151 -10.86672 -10.70231 -10.61151 -10.43885 -10.40136 -10.11963 -9.78488 -9.31262 -8.96260 -8.60863 -8.09493 -7.91204 -6.40387 -4.45072 1.30821 1.64359 2.29205 2.46967 2.80230 2.91014 3.07573 3.14035 3.15545 3.18757 3.27970 3.55699 4.10407 4.14329 4.16152 4.30002 4.66122 4.66922 4.87572 4.93696 5.04123 5.06725 5.12058 5.26549 5.31183 5.42765 5.47693 5.59707 5.62490 5.64218 5.72222 5.97514 6.07033 6.22089 6.24832 6.32713 6.45591 6.50040 6.56473 6.80363 7.06840 7.10245 7.22203 7.24778 7.46101 7.66858 7.89669 8.22135 8.65957 8.74170 9.15480 10.70627 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.010917 B = 0.003392 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2564.145014 B = 8253.232285 C =10185.768037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.188 4.188 3 C -0.011 4.011 4 C 0.064 3.936 5 O -0.314 6.314 6 C 0.146 3.854 7 C -0.232 4.232 8 C -0.027 4.027 9 C -0.170 4.170 10 C 0.566 3.434 11 O -0.562 6.562 12 N -0.584 5.584 13 C 0.178 3.822 14 C -0.551 4.551 15 H 0.085 0.915 16 C 0.083 3.917 17 N -0.875 5.875 18 Si 0.859 3.141 19 H -0.265 1.265 20 H -0.280 1.280 21 H -0.259 1.259 22 C 0.125 3.875 23 C -0.046 4.046 24 C 0.221 3.779 25 N -0.447 5.447 26 C -0.062 4.062 27 C -0.166 4.166 28 H 0.219 0.781 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.126 0.874 34 H 0.129 0.871 35 H 0.035 0.965 36 H 0.059 0.941 37 H 0.271 0.729 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.108 0.892 41 H 0.111 0.889 42 H 0.203 0.797 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.273 7.432 -0.712 17.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.188 4.188 3 C -0.047 4.047 4 C -0.011 4.011 5 O -0.227 6.227 6 C 0.101 3.899 7 C -0.250 4.250 8 C -0.046 4.046 9 C -0.173 4.173 10 C 0.357 3.643 11 O -0.443 6.443 12 N -0.314 5.314 13 C 0.058 3.942 14 C -0.588 4.588 15 H 0.103 0.897 16 C -0.124 4.124 17 N -0.511 5.511 18 Si 0.684 3.316 19 H -0.190 1.190 20 H -0.205 1.205 21 H -0.183 1.183 22 C 0.000 4.000 23 C -0.087 4.087 24 C -0.097 4.097 25 N -0.125 5.125 26 C -0.079 4.079 27 C -0.185 4.185 28 H 0.236 0.764 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.144 0.856 34 H 0.147 0.853 35 H 0.053 0.947 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.112 0.888 39 H 0.106 0.894 40 H 0.126 0.874 41 H 0.129 0.871 42 H 0.219 0.781 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -15.575 5.898 -1.456 16.717 hybrid contribution -0.517 1.252 -0.116 1.360 sum -16.091 7.150 -1.572 17.678 Atomic orbital electron populations 1.24941 0.95936 0.99874 1.00621 1.22663 0.94004 1.01241 1.00859 1.18460 0.84725 0.98731 1.02815 1.22632 0.79175 0.98495 1.00841 1.85964 1.20368 1.44220 1.72164 1.19297 0.92410 0.86548 0.91653 1.21013 0.99601 0.97608 1.06823 1.20913 0.93157 0.95832 0.94702 1.19808 0.93730 0.97926 1.05874 1.18186 0.80770 0.87492 0.77896 1.90703 1.66156 1.25936 1.61515 1.47684 1.17746 1.16634 1.49292 1.20739 0.93269 0.81994 0.98245 1.21327 1.18418 1.00816 1.18272 0.89717 1.24920 0.94296 0.98720 0.94424 1.69872 1.21157 1.31989 1.28049 0.87098 0.78831 0.84278 0.81386 1.18974 1.20528 1.18342 1.21158 0.99793 0.92315 0.86775 1.19769 1.01494 0.93177 0.94272 1.29030 0.93150 0.94077 0.93487 1.81169 1.09802 1.11142 1.10364 1.23331 1.05519 0.89633 0.89392 1.20548 0.90607 1.02003 1.05337 0.76370 0.88250 0.88292 0.91507 0.91451 0.85591 0.85265 0.94719 0.92354 0.91896 0.88750 0.89446 0.87397 0.87090 0.78098 0.84883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.47 19.25 29.55 0.57 -0.90 16 2 C -0.19 -1.63 13.34 -37.13 -0.50 -2.13 16 3 C -0.01 -0.09 6.07 -29.52 -0.18 -0.27 16 4 C 0.06 0.61 4.69 37.16 0.17 0.79 16 5 O -0.31 -4.05 10.12 -18.84 -0.19 -4.24 16 6 C 0.15 2.15 6.70 -39.02 -0.26 1.89 16 7 C -0.23 -3.15 9.01 -39.49 -0.36 -3.51 16 8 C -0.03 -0.41 9.59 -39.22 -0.38 -0.79 16 9 C -0.17 -3.01 5.58 -104.96 -0.59 -3.60 16 10 C 0.57 10.69 7.45 -12.44 -0.09 10.60 16 11 O -0.56 -11.54 16.24 5.29 0.09 -11.46 16 12 N -0.58 -10.47 2.47 -176.26 -0.43 -10.91 16 13 C 0.18 3.43 3.72 -5.19 -0.02 3.41 16 14 C -0.55 -12.88 8.03 -34.44 -0.28 -13.15 16 15 H 0.08 2.26 8.06 -52.49 -0.42 1.84 16 16 C 0.08 2.01 5.34 -17.82 -0.10 1.92 16 17 N -0.88 -23.36 13.96 55.43 0.77 -22.59 16 18 Si 0.86 17.69 27.35 -169.99 -4.65 13.04 16 19 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 20 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 21 H -0.26 -4.98 6.54 56.52 0.37 -4.61 16 22 C 0.12 1.92 5.43 -4.04 -0.02 1.90 16 23 C -0.05 -0.55 6.03 -29.52 -0.18 -0.73 16 24 C 0.22 3.06 15.43 -20.77 -0.32 2.74 16 25 N -0.45 -7.31 18.53 42.14 0.78 -6.52 16 26 C -0.06 -1.12 7.47 -39.22 -0.29 -1.42 16 27 C -0.17 -2.75 9.97 -39.50 -0.39 -3.14 16 28 H 0.22 0.88 7.80 -54.10 -0.42 0.46 16 29 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.59 7.64 -51.93 -0.40 0.20 16 32 H 0.07 0.61 7.67 -51.93 -0.40 0.22 16 33 H 0.13 1.36 6.28 -52.49 -0.33 1.03 16 34 H 0.13 1.81 7.92 -52.49 -0.42 1.40 16 35 H 0.03 0.64 7.19 -51.93 -0.37 0.26 16 36 H 0.06 1.11 3.50 -51.98 -0.18 0.93 16 37 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 38 H 0.09 1.48 8.08 -51.93 -0.42 1.06 16 39 H 0.09 1.41 7.31 -51.93 -0.38 1.03 16 40 H 0.11 1.22 8.14 -51.93 -0.42 0.79 16 41 H 0.11 1.17 8.14 -51.94 -0.42 0.75 16 42 H 0.20 4.10 2.90 -52.49 -0.15 3.94 16 43 H 0.13 2.11 8.06 -52.49 -0.42 1.69 16 LS Contribution 375.80 15.07 5.66 5.66 Total: -1.00 -29.40 375.80 -6.34 -35.75 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -5.17 Total: 7.66 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: -3.20 Total: -6.39 kcal Atomic # 7 Polarization: -41.14 SS G_CDS: 1.12 Total: -40.02 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -0.10 Total: -15.70 kcal Atomic # 14 Polarization: 17.69 SS G_CDS: -4.65 Total: 13.04 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -29.40 -6.34 -35.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294340496.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.690 kcal (2) G-P(sol) polarization free energy of solvation -29.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds