Wall clock time and date at job start Tue Mar 31 2020 14:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47191 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47392 * 31.27901 * 3 2 1 5 5 O 1.42904 * 109.47377 * 179.97438 * 4 3 2 6 6 C 1.35711 * 117.00220 * 180.02562 * 5 4 3 7 7 C 1.39002 * 119.90955 * 0.29057 * 6 5 4 8 8 C 1.37701 * 120.08650 * 180.25938 * 7 6 5 9 9 C 1.39741 * 119.90999 * 359.45180 * 8 7 6 10 10 C 1.47598 * 120.08325 * 180.29903 * 9 8 7 11 11 O 1.21585 * 120.00320 * 330.13841 * 10 9 8 12 12 N 1.34782 * 119.99755 * 150.14778 * 10 9 8 13 13 C 1.46504 * 119.99756 * 6.16070 * 12 10 9 14 14 C 1.50696 * 109.47361 * 98.23590 * 13 12 10 15 15 H 1.08001 * 119.99522 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00414 * 180.02562 * 14 13 12 17 17 N 1.31507 * 120.00305 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 119.99779 * 359.97438 * 16 14 13 19 19 H 1.48493 * 109.46888 * 90.00088 * 18 16 14 20 20 H 1.48494 * 109.47276 * 210.00517 * 18 16 14 21 21 H 1.48501 * 109.47018 * 330.00327 * 18 16 14 22 22 C 1.46498 * 120.00203 * 186.16425 * 12 10 9 23 23 C 1.52997 * 109.47275 * 91.20031 * 22 12 10 24 24 C 1.47202 * 109.47046 * 180.02562 * 23 22 12 25 25 N 9.61873 * 142.94707 * 202.92369 * 6 1 2 26 26 C 1.39735 * 119.82439 * 0.27389 * 9 8 7 27 27 C 1.37702 * 119.91066 * 0.02562 * 26 9 8 28 28 H 4.44644 * 5.63264 * 180.02562 * 4 1 2 29 29 H 1.08999 * 109.47208 * 271.27880 * 3 2 1 30 30 H 1.08996 * 109.47273 * 151.28165 * 3 2 1 31 31 H 1.08999 * 109.46962 * 59.99828 * 4 3 2 32 32 H 1.09002 * 109.47019 * 299.99927 * 4 3 2 33 33 H 1.07998 * 119.95622 * 0.02562 * 7 6 5 34 34 H 1.07998 * 120.04767 * 179.72222 * 8 7 6 35 35 H 1.09002 * 109.46816 * 218.23525 * 13 12 10 36 36 H 1.08999 * 109.47366 * 338.23196 * 13 12 10 37 37 H 0.96996 * 120.00015 * 180.02562 * 17 16 14 38 38 H 1.09003 * 109.47183 * 211.19990 * 22 12 10 39 39 H 1.09003 * 109.46815 * 331.19838 * 22 12 10 40 40 H 1.09003 * 109.46981 * 300.00082 * 23 22 12 41 41 H 1.08989 * 109.47212 * 60.00221 * 23 22 12 42 42 H 1.07995 * 120.04663 * 180.02562 * 26 9 8 43 43 H 1.07992 * 119.95793 * 180.02562 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.2319 -0.7489 5 8 4.5856 -1.2309 -0.7494 6 6 5.2022 -2.2637 -1.3778 7 6 4.4438 -3.2562 -1.9877 8 6 5.0657 -4.3086 -2.6216 9 6 6.4611 -4.3720 -2.6612 10 6 7.1316 -5.4949 -3.3454 11 8 6.5947 -6.5846 -3.3948 12 7 8.3393 -5.3122 -3.9153 13 6 9.0468 -4.0413 -3.7409 14 6 10.0650 -4.1803 -2.6387 15 1 10.1739 -5.1212 -2.1197 16 6 10.8569 -3.1062 -2.2921 17 7 11.7458 -3.2276 -1.3305 18 14 10.6681 -1.4786 -3.1893 19 1 9.6591 -0.6425 -2.4908 20 1 11.9724 -0.7690 -3.2071 21 1 10.2227 -1.7307 -4.5833 22 6 8.9443 -6.3845 -4.7092 23 6 8.5414 -6.2225 -6.1762 24 6 9.1489 -7.3004 -6.9738 25 7 9.6194 -8.1297 -7.5906 26 6 7.2199 -3.3693 -2.0518 27 6 6.5904 -2.3234 -1.4145 28 1 -1.0498 -0.0002 -0.0003 29 1 3.0093 -0.0221 1.0274 30 1 3.0089 0.9020 -0.4938 31 1 2.7932 -1.2091 -1.7763 32 1 2.7936 -2.1333 -0.2551 33 1 3.3654 -3.2038 -1.9610 34 1 4.4758 -5.0817 -3.0914 35 1 9.5512 -3.7758 -4.6700 36 1 8.3325 -3.2606 -3.4793 37 1 12.3026 -2.4718 -1.0865 38 1 10.0297 -6.3325 -4.6227 39 1 8.5963 -7.3497 -4.3412 40 1 7.4560 -6.2745 -6.2628 41 1 8.8894 -5.2575 -6.5442 42 1 8.2985 -3.4144 -2.0806 43 1 7.1761 -1.5478 -0.9436 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294340496.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:36 Heat of formation + Delta-G solvation = 42.525898 kcal Electronic energy + Delta-G solvation = -26398.687846 eV Core-core repulsion = 22604.583093 eV Total energy + Delta-G solvation = -3794.104753 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.64030 -40.61227 -38.32615 -37.86606 -36.98987 -35.48321 -34.75534 -33.14401 -32.15548 -31.31940 -30.36223 -29.76372 -25.86397 -25.47674 -24.59344 -23.34453 -22.85185 -20.47573 -19.51605 -19.16922 -18.62048 -18.46810 -18.17656 -17.32709 -17.22913 -16.74271 -16.27948 -15.96857 -15.76689 -15.51528 -15.28500 -14.87394 -14.78980 -14.64847 -14.58232 -14.41268 -14.18672 -13.80725 -13.60497 -13.45486 -13.33723 -13.18494 -13.04449 -12.72892 -12.59003 -12.26489 -12.03665 -11.91214 -11.79670 -11.67324 -11.42200 -11.23946 -11.03217 -10.81954 -10.72016 -9.89877 -9.53966 -9.16073 -8.28094 -6.36413 0.04216 0.41799 1.46519 1.48898 1.56161 1.62437 1.63475 1.79137 1.89614 1.90275 2.22750 2.30104 2.37523 2.85228 3.06197 3.16710 3.60168 3.71127 3.81087 3.95326 4.00169 4.09485 4.11657 4.17537 4.29907 4.39015 4.49744 4.55509 4.71409 4.77462 4.84501 4.85201 4.91225 4.94065 5.07229 5.12157 5.14569 5.25804 5.31236 5.43073 5.51768 5.68618 5.81353 6.17589 6.38443 6.55303 6.58946 6.66776 6.73988 7.21492 7.32728 8.87070 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.010917 B = 0.003392 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2564.145014 B = 8253.232285 C =10185.768037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.224 4.224 3 C -0.007 4.007 4 C 0.058 3.942 5 O -0.320 6.320 6 C 0.155 3.845 7 C -0.217 4.217 8 C -0.023 4.023 9 C -0.190 4.190 10 C 0.563 3.437 11 O -0.584 6.584 12 N -0.585 5.585 13 C 0.185 3.815 14 C -0.541 4.541 15 H 0.035 0.965 16 C 0.031 3.969 17 N -0.933 5.933 18 Si 0.917 3.083 19 H -0.254 1.254 20 H -0.289 1.289 21 H -0.228 1.228 22 C 0.120 3.880 23 C -0.030 4.030 24 C 0.245 3.755 25 N -0.490 5.490 26 C -0.077 4.077 27 C -0.179 4.179 28 H 0.247 0.753 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.161 0.839 34 H 0.144 0.856 35 H 0.056 0.944 36 H 0.073 0.927 37 H 0.270 0.730 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.125 0.875 41 H 0.138 0.862 42 H 0.178 0.822 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.531 9.349 -2.040 21.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.224 4.224 3 C -0.044 4.044 4 C -0.016 4.016 5 O -0.233 6.233 6 C 0.109 3.891 7 C -0.236 4.236 8 C -0.042 4.042 9 C -0.193 4.193 10 C 0.354 3.646 11 O -0.467 6.467 12 N -0.313 5.313 13 C 0.064 3.936 14 C -0.579 4.579 15 H 0.053 0.947 16 C -0.170 4.170 17 N -0.571 5.571 18 Si 0.739 3.261 19 H -0.178 1.178 20 H -0.215 1.215 21 H -0.150 1.150 22 C -0.004 4.004 23 C -0.071 4.071 24 C -0.073 4.073 25 N -0.168 5.168 26 C -0.094 4.094 27 C -0.197 4.197 28 H 0.264 0.736 29 H 0.120 0.880 30 H 0.122 0.878 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.178 0.822 34 H 0.161 0.839 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.105 0.895 39 H 0.094 0.906 40 H 0.143 0.857 41 H 0.156 0.844 42 H 0.194 0.806 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -18.854 7.808 -2.806 20.598 hybrid contribution 0.344 0.628 0.449 0.845 sum -18.510 8.435 -2.357 20.477 Atomic orbital electron populations 1.25750 0.96820 0.98374 0.99192 1.22935 0.94560 1.02651 1.02226 1.18403 0.84817 0.98287 1.02848 1.22896 0.77121 0.99628 1.01991 1.85966 1.22434 1.43391 1.71508 1.19268 0.91897 0.86984 0.90960 1.21322 1.01212 0.96121 1.04902 1.21105 0.92140 0.96517 0.94410 1.19811 0.94884 0.97651 1.06989 1.18456 0.80889 0.87606 0.77636 1.90681 1.66798 1.26763 1.62490 1.47681 1.17543 1.16672 1.49440 1.20609 0.92630 0.83047 0.97335 1.21398 1.19113 0.98640 1.18752 0.94664 1.25713 0.93757 1.02503 0.95021 1.70033 1.23158 1.33226 1.30696 0.86155 0.78558 0.79528 0.81840 1.17799 1.21519 1.15022 1.21209 0.99237 0.91240 0.88727 1.19718 1.02359 0.93657 0.91330 1.29215 0.91990 0.93443 0.92616 1.81198 1.11289 1.12466 1.11875 1.22954 1.04340 0.90924 0.91232 1.20541 0.91889 1.01699 1.05616 0.73620 0.88040 0.87803 0.90255 0.90656 0.82156 0.83854 0.92652 0.90951 0.92094 0.89548 0.90596 0.85686 0.84426 0.80571 0.84986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.22 19.25 74.32 1.43 -0.79 16 2 C -0.22 -3.34 13.34 31.12 0.42 -2.93 16 3 C -0.01 -0.10 6.07 28.78 0.17 0.07 16 4 C 0.06 0.94 4.69 71.98 0.34 1.28 16 5 O -0.32 -7.45 10.12 -90.32 -0.91 -8.36 16 6 C 0.16 4.19 6.70 22.63 0.15 4.34 16 7 C -0.22 -5.19 9.01 22.33 0.20 -4.99 16 8 C -0.02 -0.64 9.59 22.51 0.22 -0.43 16 9 C -0.19 -6.54 5.58 -20.08 -0.11 -6.66 16 10 C 0.56 21.01 7.45 86.71 0.65 21.66 16 11 O -0.58 -23.80 16.24 -3.98 -0.06 -23.86 16 12 N -0.58 -20.73 2.47 -829.84 -2.05 -22.78 16 13 C 0.18 6.97 3.72 85.63 0.32 7.29 16 14 C -0.54 -26.12 8.03 25.60 0.21 -25.91 16 15 H 0.04 2.00 8.06 -2.91 -0.02 1.98 16 16 C 0.03 1.54 5.34 84.66 0.45 1.99 16 17 N -0.93 -52.10 13.96 21.45 0.30 -51.80 16 18 Si 0.92 35.95 27.35 68.60 1.88 37.83 16 19 H -0.25 -9.44 7.11 99.48 0.71 -8.73 16 20 H -0.29 -11.73 7.11 99.48 0.71 -11.03 16 21 H -0.23 -7.71 6.54 99.48 0.65 -7.06 16 22 C 0.12 3.67 5.43 86.38 0.47 4.14 16 23 C -0.03 -0.66 6.03 28.79 0.17 -0.48 16 24 C 0.24 6.47 15.43 89.45 1.38 7.85 16 25 N -0.49 -15.71 18.53 20.00 0.37 -15.34 16 26 C -0.08 -2.77 7.47 22.50 0.17 -2.61 16 27 C -0.18 -5.73 9.97 22.32 0.22 -5.51 16 28 H 0.25 1.09 7.80 -4.43 -0.03 1.05 16 29 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.08 1.11 7.64 -2.39 -0.02 1.09 16 32 H 0.08 1.12 7.67 -2.39 -0.02 1.10 16 33 H 0.16 2.70 6.28 -2.91 -0.02 2.69 16 34 H 0.14 3.61 7.92 -2.91 -0.02 3.59 16 35 H 0.06 1.88 7.19 -2.39 -0.02 1.87 16 36 H 0.07 2.65 3.50 -2.43 -0.01 2.65 16 37 H 0.27 14.17 8.31 -92.71 -0.77 13.39 16 38 H 0.09 2.75 8.08 -2.39 -0.02 2.73 16 39 H 0.08 2.48 7.31 -2.39 -0.02 2.47 16 40 H 0.13 2.46 8.14 -2.39 -0.02 2.44 16 41 H 0.14 2.41 8.14 -2.39 -0.02 2.39 16 42 H 0.18 7.29 2.90 -2.91 -0.01 7.28 16 43 H 0.13 4.15 8.06 -2.91 -0.02 4.12 16 Total: -1.00 -66.70 375.80 7.36 -59.34 By element: Atomic # 1 Polarization: 25.64 SS G_CDS: 0.99 Total: 26.63 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: 6.85 Total: -1.67 kcal Atomic # 7 Polarization: -88.54 SS G_CDS: -1.38 Total: -89.91 kcal Atomic # 8 Polarization: -31.24 SS G_CDS: -0.98 Total: -32.22 kcal Atomic # 14 Polarization: 35.95 SS G_CDS: 1.88 Total: 37.83 kcal Total: -66.70 7.36 -59.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294340496.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.868 kcal (2) G-P(sol) polarization free energy of solvation -66.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds