Wall clock time and date at job start Tue Mar 31 2020 14:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47346 * 2 1 4 4 C 1.53001 * 109.46637 * 239.99940 * 2 1 3 5 5 C 1.50697 * 109.47291 * 60.00213 * 4 2 1 6 6 H 1.08006 * 119.99920 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00428 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99563 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00432 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47116 * 59.99479 * 9 7 5 11 11 H 1.48490 * 109.47381 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46756 * 300.00079 * 9 7 5 13 13 C 1.53000 * 109.47233 * 120.00458 * 2 1 3 14 14 N 1.46499 * 109.46840 * 299.99500 * 13 2 1 15 15 C 1.39703 * 119.99920 * 180.02562 * 14 13 2 16 16 C 1.39040 * 120.00113 * 359.72982 * 15 14 13 17 17 C 1.38208 * 120.22797 * 179.71949 * 16 15 14 18 18 C 1.38009 * 120.23711 * 0.55052 * 17 16 15 19 19 C 1.50700 * 120.00143 * 179.70107 * 18 17 16 20 20 F 1.39891 * 109.47164 * 0.02701 * 19 18 17 21 21 F 1.39908 * 109.46932 * 120.02971 * 19 18 17 22 22 F 1.39904 * 109.47162 * 240.02232 * 19 18 17 23 23 C 1.39644 * 119.99728 * 359.73032 * 18 17 16 24 24 C 1.43200 * 120.11471 * 179.97438 * 23 18 17 25 25 N 8.28482 * 85.76456 * 83.99688 * 2 1 3 26 26 C 1.38626 * 120.00440 * 180.02562 * 15 14 13 27 27 H 1.09000 * 109.46986 * 299.99746 * 1 2 3 28 28 H 1.08993 * 109.47662 * 59.99968 * 1 2 3 29 29 H 1.09002 * 109.47075 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47554 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47108 * 300.00289 * 3 2 1 32 32 H 1.09000 * 109.46870 * 60.00183 * 3 2 1 33 33 H 1.09001 * 109.47109 * 179.97438 * 4 2 1 34 34 H 1.09002 * 109.47508 * 299.99876 * 4 2 1 35 35 H 0.97000 * 119.99425 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.47398 * 59.99826 * 13 2 1 37 37 H 1.09001 * 109.47194 * 180.02562 * 13 2 1 38 38 H 0.97000 * 120.00420 * 0.02562 * 14 13 2 39 39 H 1.07994 * 119.87819 * 359.97438 * 16 15 14 40 40 H 1.08002 * 119.87910 * 180.27829 * 17 16 15 41 41 H 1.08001 * 120.11034 * 359.97438 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5376 -0.0109 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8710 -0.4816 -3.7320 8 7 2.6278 -1.5504 -3.8527 9 14 1.2489 0.3994 -5.2572 10 1 1.7440 1.7995 -5.2567 11 1 1.7436 -0.3007 -6.4697 12 1 -0.2361 0.3995 -5.2576 13 6 2.0401 -0.7213 1.2492 14 7 1.5518 -0.0307 2.4454 15 6 1.8898 -0.5078 3.7142 16 6 2.6848 -1.6412 3.8417 17 6 3.0268 -2.1139 5.0947 18 6 2.5722 -1.4708 6.2280 19 6 2.9428 -1.9946 7.5915 20 9 3.7469 -3.1308 7.4518 21 9 3.6451 -1.0097 8.2944 22 9 1.7803 -2.3295 8.2942 23 6 1.7683 -0.3349 6.1111 24 6 1.2947 0.3340 7.2854 25 7 0.9181 0.8641 8.2169 26 6 1.4274 0.1454 4.8462 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6768 1.9562 0.8900 33 1 3.1299 -0.7209 -1.2496 34 1 1.6766 -1.7490 -1.2493 35 1 2.8627 -1.8813 -4.7337 36 1 1.6767 -1.7490 1.2492 37 1 3.1301 -0.7209 1.2494 38 1 0.9939 0.7578 2.3565 39 1 3.0397 -2.1516 2.9586 40 1 3.6484 -2.9922 5.1872 41 1 0.8060 1.0234 4.7493 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340939414.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:28 Heat of formation + Delta-G solvation = -110.653390 kcal Electronic energy + Delta-G solvation = -26878.475358 eV Core-core repulsion = 22535.871512 eV Total energy + Delta-G solvation = -4342.603846 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.130 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.32078 -47.85048 -47.77061 -40.15805 -37.99540 -36.70109 -34.78917 -32.49783 -31.75103 -30.46459 -27.28470 -26.80425 -26.65848 -25.13244 -24.17366 -22.82152 -22.07103 -19.45599 -18.74206 -18.64378 -18.35605 -17.97463 -16.62179 -16.28805 -15.93328 -14.92210 -14.88502 -14.69192 -14.65125 -14.64478 -14.26216 -14.25699 -14.09312 -13.96290 -13.93842 -13.65907 -13.47383 -13.13868 -13.11482 -13.01820 -12.85837 -12.33337 -12.16741 -11.79618 -11.66874 -11.41484 -11.11938 -10.96740 -10.77612 -10.55441 -10.45604 -10.38169 -9.95638 -9.38430 -9.36144 -9.08073 -8.46360 -7.78189 -6.11075 -4.12618 0.35199 0.92225 2.30575 2.48487 2.68588 3.17005 3.24884 3.30914 3.32289 3.41278 3.44244 3.70723 3.82182 4.25803 4.36216 4.49255 4.81273 4.96559 5.06120 5.21766 5.24500 5.38478 5.42992 5.56168 5.59305 5.84176 5.88157 5.94336 5.97802 6.05756 6.19328 6.22500 6.48807 6.48889 6.86066 6.92674 6.93981 7.07836 7.12251 7.47863 7.51932 7.60007 7.86685 8.28231 8.91598 9.51406 11.00262 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.027930 B = 0.002303 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.248844 B =12156.518185 C =12797.740668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.071 4.071 3 C -0.128 4.128 4 C 0.037 3.963 5 C -0.515 4.515 6 H 0.059 0.941 7 C 0.058 3.942 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.123 3.877 14 N -0.721 5.721 15 C 0.256 3.744 16 C -0.177 4.177 17 C -0.017 4.017 18 C -0.220 4.220 19 C 0.510 3.490 20 F -0.176 7.176 21 F -0.179 7.179 22 F -0.179 7.179 23 C 0.072 3.928 24 C 0.241 3.759 25 N -0.392 5.392 26 C -0.157 4.157 27 H 0.029 0.971 28 H 0.067 0.933 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.067 0.933 32 H 0.029 0.971 33 H 0.018 0.982 34 H 0.018 0.982 35 H 0.261 0.739 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.405 0.595 39 H 0.144 0.856 40 H 0.145 0.855 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.331 -0.470 17.696 17.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.072 4.072 3 C -0.185 4.185 4 C 0.000 4.000 5 C -0.553 4.553 6 H 0.077 0.923 7 C -0.143 4.143 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.203 1.203 13 C 0.000 4.000 14 N -0.345 5.345 15 C 0.146 3.854 16 C -0.200 4.200 17 C -0.036 4.036 18 C -0.227 4.227 19 C 0.456 3.544 20 F -0.157 7.157 21 F -0.160 7.160 22 F -0.160 7.160 23 C 0.068 3.932 24 C -0.075 4.075 25 N -0.067 5.067 26 C -0.182 4.182 27 H 0.048 0.952 28 H 0.086 0.914 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.048 0.952 33 H 0.037 0.963 34 H 0.037 0.963 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.242 0.758 39 H 0.161 0.839 40 H 0.163 0.837 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.099 0.135 18.811 18.811 hybrid contribution -0.285 0.408 -1.136 1.240 sum -0.384 0.543 17.675 17.688 Atomic orbital electron populations 1.21767 0.95122 1.01247 1.00388 1.20888 0.95588 0.95930 0.94755 1.21766 1.00569 0.95804 1.00389 1.19087 0.96309 0.95178 0.89460 1.21122 1.31437 1.12204 0.90506 0.92329 1.24995 0.95209 0.95036 0.99107 1.69938 1.36731 1.22992 1.23700 0.86711 0.79191 0.79805 0.82617 1.20291 1.21334 1.20297 1.21833 0.98716 0.96149 0.83308 1.45336 1.54721 1.32212 1.02277 1.17877 0.90485 0.91347 0.85680 1.20919 1.03041 0.97928 0.98140 1.20653 0.95172 0.97725 0.90077 1.19507 1.09747 1.01290 0.92140 1.18224 0.74636 0.75468 0.86073 1.93159 1.74271 1.52380 1.95882 1.93226 1.79506 1.62148 1.81128 1.93225 1.49061 1.92585 1.81131 1.15162 0.97089 0.93084 0.87884 1.25632 0.94387 0.94226 0.93215 1.81226 1.07643 1.08015 1.09810 1.20499 1.05782 1.02993 0.88936 0.95196 0.91372 0.93283 0.93280 0.91376 0.95189 0.96331 0.96334 0.92892 0.91688 0.91690 0.75819 0.83856 0.83693 0.84240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.96 8.05 37.16 0.30 -1.66 16 2 C -0.07 -1.14 0.54 -154.51 -0.08 -1.22 16 3 C -0.13 -1.96 8.05 37.16 0.30 -1.66 16 4 C 0.04 0.81 4.04 -27.88 -0.11 0.70 16 5 C -0.51 -12.71 7.65 -34.44 -0.26 -12.97 16 6 H 0.06 1.40 5.68 -52.48 -0.30 1.10 16 7 C 0.06 1.52 5.46 -17.82 -0.10 1.43 16 8 N -0.89 -24.93 13.29 55.43 0.74 -24.19 16 9 Si 0.89 20.22 29.54 -169.99 -5.02 15.20 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 13 C 0.12 1.57 3.80 -4.04 -0.02 1.55 16 14 N -0.72 -7.43 5.14 -58.67 -0.30 -7.73 16 15 C 0.26 2.45 6.65 -83.83 -0.56 1.90 16 16 C -0.18 -1.60 9.31 -39.30 -0.37 -1.96 16 17 C -0.02 -0.15 9.41 -39.68 -0.37 -0.52 16 18 C -0.22 -2.19 5.40 -104.18 -0.56 -2.75 16 19 C 0.51 5.48 2.89 36.01 0.10 5.58 16 20 F -0.18 -1.76 15.97 2.25 0.04 -1.72 16 21 F -0.18 -2.10 16.52 2.25 0.04 -2.07 16 22 F -0.18 -2.10 16.52 2.25 0.04 -2.06 16 23 C 0.07 0.73 5.71 -106.96 -0.61 0.12 16 24 C 0.24 2.85 13.17 -22.47 -0.30 2.56 16 25 N -0.39 -5.34 18.54 41.84 0.78 -4.57 16 26 C -0.16 -1.41 9.60 -38.95 -0.37 -1.79 16 27 H 0.03 0.37 6.86 -51.93 -0.36 0.01 16 28 H 0.07 1.17 6.62 -51.93 -0.34 0.83 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.07 1.17 6.62 -51.93 -0.34 0.83 16 32 H 0.03 0.37 6.86 -51.93 -0.36 0.01 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 36 H 0.06 0.83 7.93 -51.93 -0.41 0.42 16 37 H 0.06 0.83 7.95 -51.93 -0.41 0.42 16 38 H 0.40 3.86 6.17 -40.82 -0.25 3.61 16 39 H 0.14 1.21 6.71 -52.49 -0.35 0.86 16 40 H 0.15 0.98 7.14 -52.49 -0.37 0.60 16 41 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 354.02 15.07 5.34 5.34 Total: -1.00 -27.55 354.02 -6.13 -33.68 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: -4.75 Total: -1.19 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: -3.01 Total: -10.69 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: 1.21 Total: -36.49 kcal Atomic # 9 Polarization: -5.96 SS G_CDS: 0.11 Total: -5.85 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -27.55 -6.13 -33.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340939414.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.976 kcal (2) G-P(sol) polarization free energy of solvation -27.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds