Wall clock time and date at job start Tue Mar 31 2020 14:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47346 * 2 1 4 4 C 1.53001 * 109.46637 * 239.99940 * 2 1 3 5 5 C 1.50697 * 109.47291 * 60.00213 * 4 2 1 6 6 H 1.08006 * 119.99920 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00428 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99563 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00432 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47116 * 59.99479 * 9 7 5 11 11 H 1.48490 * 109.47381 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46756 * 300.00079 * 9 7 5 13 13 C 1.53000 * 109.47233 * 120.00458 * 2 1 3 14 14 N 1.46499 * 109.46840 * 299.99500 * 13 2 1 15 15 C 1.39703 * 119.99920 * 180.02562 * 14 13 2 16 16 C 1.39040 * 120.00113 * 359.72982 * 15 14 13 17 17 C 1.38208 * 120.22797 * 179.71949 * 16 15 14 18 18 C 1.38009 * 120.23711 * 0.55052 * 17 16 15 19 19 C 1.50700 * 120.00143 * 179.70107 * 18 17 16 20 20 F 1.39891 * 109.47164 * 0.02701 * 19 18 17 21 21 F 1.39908 * 109.46932 * 120.02971 * 19 18 17 22 22 F 1.39904 * 109.47162 * 240.02232 * 19 18 17 23 23 C 1.39644 * 119.99728 * 359.73032 * 18 17 16 24 24 C 1.43200 * 120.11471 * 179.97438 * 23 18 17 25 25 N 8.28482 * 85.76456 * 83.99688 * 2 1 3 26 26 C 1.38626 * 120.00440 * 180.02562 * 15 14 13 27 27 H 1.09000 * 109.46986 * 299.99746 * 1 2 3 28 28 H 1.08993 * 109.47662 * 59.99968 * 1 2 3 29 29 H 1.09002 * 109.47075 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47554 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47108 * 300.00289 * 3 2 1 32 32 H 1.09000 * 109.46870 * 60.00183 * 3 2 1 33 33 H 1.09001 * 109.47109 * 179.97438 * 4 2 1 34 34 H 1.09002 * 109.47508 * 299.99876 * 4 2 1 35 35 H 0.97000 * 119.99425 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.47398 * 59.99826 * 13 2 1 37 37 H 1.09001 * 109.47194 * 180.02562 * 13 2 1 38 38 H 0.97000 * 120.00420 * 0.02562 * 14 13 2 39 39 H 1.07994 * 119.87819 * 359.97438 * 16 15 14 40 40 H 1.08002 * 119.87910 * 180.27829 * 17 16 15 41 41 H 1.08001 * 120.11034 * 359.97438 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5376 -0.0109 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8710 -0.4816 -3.7320 8 7 2.6278 -1.5504 -3.8527 9 14 1.2489 0.3994 -5.2572 10 1 1.7440 1.7995 -5.2567 11 1 1.7436 -0.3007 -6.4697 12 1 -0.2361 0.3995 -5.2576 13 6 2.0401 -0.7213 1.2492 14 7 1.5518 -0.0307 2.4454 15 6 1.8898 -0.5078 3.7142 16 6 2.6848 -1.6412 3.8417 17 6 3.0268 -2.1139 5.0947 18 6 2.5722 -1.4708 6.2280 19 6 2.9428 -1.9946 7.5915 20 9 3.7469 -3.1308 7.4518 21 9 3.6451 -1.0097 8.2944 22 9 1.7803 -2.3295 8.2942 23 6 1.7683 -0.3349 6.1111 24 6 1.2947 0.3340 7.2854 25 7 0.9181 0.8641 8.2169 26 6 1.4274 0.1454 4.8462 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6768 1.9562 0.8900 33 1 3.1299 -0.7209 -1.2496 34 1 1.6766 -1.7490 -1.2493 35 1 2.8627 -1.8813 -4.7337 36 1 1.6767 -1.7490 1.2492 37 1 3.1301 -0.7209 1.2494 38 1 0.9939 0.7578 2.3565 39 1 3.0397 -2.1516 2.9586 40 1 3.6484 -2.9922 5.1872 41 1 0.8060 1.0234 4.7493 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340939414.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:28 Heat of formation + Delta-G solvation = -123.536974 kcal Electronic energy + Delta-G solvation = -26879.034032 eV Core-core repulsion = 22535.871512 eV Total energy + Delta-G solvation = -4343.162520 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.130 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.17935 -48.68902 -48.66306 -40.95261 -39.13618 -37.69572 -35.88825 -34.28137 -32.50655 -31.41170 -28.95686 -27.90143 -27.82844 -26.17365 -25.11239 -24.28024 -22.91114 -20.28332 -19.85148 -19.51218 -19.38106 -18.79777 -18.30599 -17.39792 -16.84919 -16.40676 -15.85197 -15.63343 -15.62665 -15.54656 -15.26203 -15.14659 -15.02949 -14.89247 -14.80951 -14.78318 -14.37837 -14.30203 -14.24867 -14.14676 -13.87477 -13.83939 -13.43715 -12.83646 -12.75132 -12.59021 -12.57724 -12.44858 -12.26340 -12.12879 -11.92148 -11.58483 -11.13904 -10.93015 -10.80079 -10.46316 -10.12054 -8.58088 -8.11607 -6.17193 -0.43635 0.20718 1.40051 1.44448 1.44756 1.51781 1.65734 1.84143 2.29662 2.46979 2.61024 2.62604 2.88690 3.00506 3.23804 3.41045 3.80577 4.02731 4.09496 4.18341 4.20149 4.32050 4.37226 4.69214 4.77087 4.81906 4.83180 4.88298 5.04013 5.14187 5.18002 5.18929 5.23124 5.45416 5.53060 5.58068 5.59859 5.61983 5.88009 5.95517 6.17392 6.22947 6.38600 6.74644 6.98416 7.50240 9.00029 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.027930 B = 0.002303 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.248844 B =12156.518185 C =12797.740668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.065 4.065 3 C -0.123 4.123 4 C 0.041 3.959 5 C -0.515 4.515 6 H 0.066 0.934 7 C 0.000 4.000 8 N -0.934 5.934 9 Si 0.948 3.052 10 H -0.270 1.270 11 H -0.291 1.291 12 H -0.270 1.270 13 C 0.137 3.863 14 N -0.718 5.718 15 C 0.252 3.748 16 C -0.175 4.175 17 C -0.011 4.011 18 C -0.221 4.221 19 C 0.508 3.492 20 F -0.171 7.171 21 F -0.187 7.187 22 F -0.187 7.187 23 C 0.060 3.940 24 C 0.258 3.742 25 N -0.430 5.430 26 C -0.141 4.141 27 H 0.066 0.934 28 H 0.045 0.955 29 H 0.041 0.959 30 H 0.041 0.959 31 H 0.045 0.955 32 H 0.066 0.934 33 H -0.007 1.007 34 H -0.007 1.007 35 H 0.259 0.741 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.411 0.589 39 H 0.150 0.850 40 H 0.164 0.836 41 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.239 0.335 18.347 18.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.065 4.065 3 C -0.181 4.181 4 C 0.003 3.997 5 C -0.553 4.553 6 H 0.084 0.916 7 C -0.197 4.197 8 N -0.576 5.576 9 Si 0.774 3.226 10 H -0.195 1.195 11 H -0.217 1.217 12 H -0.195 1.195 13 C 0.013 3.987 14 N -0.343 5.343 15 C 0.143 3.857 16 C -0.199 4.199 17 C -0.030 4.030 18 C -0.227 4.227 19 C 0.454 3.546 20 F -0.152 7.152 21 F -0.168 7.168 22 F -0.168 7.168 23 C 0.056 3.944 24 C -0.057 4.057 25 N -0.105 5.105 26 C -0.166 4.166 27 H 0.085 0.915 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.085 0.915 33 H 0.011 0.989 34 H 0.011 0.989 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.249 0.751 39 H 0.168 0.832 40 H 0.181 0.819 41 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -0.683 0.960 19.487 19.522 hybrid contribution -0.076 0.113 -1.294 1.301 sum -0.760 1.073 18.193 18.240 Atomic orbital electron populations 1.21701 0.94269 1.01019 1.01084 1.20675 0.96166 0.96063 0.93634 1.21700 1.00108 0.95182 1.01084 1.18963 0.94592 0.94305 0.91811 1.21594 1.30230 1.11970 0.91485 0.91633 1.25804 0.95786 0.95845 1.02266 1.70070 1.38667 1.24787 1.24029 0.85762 0.78888 0.78852 0.79111 1.19515 1.21738 1.19524 1.21456 0.98604 0.95800 0.82828 1.45030 1.55237 1.32429 1.01642 1.17890 0.90859 0.91649 0.85338 1.21079 1.02534 0.97709 0.98529 1.20817 0.94847 0.97989 0.89340 1.19544 1.09871 1.01372 0.91962 1.18367 0.74404 0.75491 0.86332 1.93167 1.74103 1.52103 1.95845 1.93211 1.79667 1.62511 1.81413 1.93210 1.49519 1.92650 1.81416 1.15205 0.97994 0.93489 0.87708 1.25862 0.93412 0.93404 0.93041 1.81238 1.09087 1.09354 1.10858 1.20610 1.04930 1.03047 0.88022 0.91529 0.93588 0.93991 0.93994 0.93593 0.91521 0.98877 0.98874 0.93222 0.91696 0.91706 0.75085 0.83215 0.81859 0.82315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.54 8.05 71.98 0.58 -2.96 16 2 C -0.06 -1.99 0.54 -52.18 -0.03 -2.02 16 3 C -0.12 -3.54 8.05 71.98 0.58 -2.96 16 4 C 0.04 1.81 4.04 29.85 0.12 1.93 16 5 C -0.51 -25.61 7.65 25.60 0.20 -25.41 16 6 H 0.07 3.11 5.68 -2.91 -0.02 3.09 16 7 C 0.00 0.01 5.46 84.65 0.46 0.47 16 8 N -0.93 -53.33 13.29 21.45 0.28 -53.05 16 9 Si 0.95 41.66 29.54 68.60 2.03 43.68 16 10 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 11 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 12 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 13 C 0.14 3.21 3.80 86.38 0.33 3.54 16 14 N -0.72 -12.38 5.14 -339.52 -1.74 -14.12 16 15 C 0.25 4.01 6.65 38.17 0.25 4.26 16 16 C -0.17 -2.67 9.31 22.45 0.21 -2.46 16 17 C -0.01 -0.16 9.41 22.21 0.21 0.05 16 18 C -0.22 -3.93 5.40 -19.58 -0.11 -4.03 16 19 C 0.51 10.20 2.89 71.24 0.21 10.41 16 20 F -0.17 -3.14 15.97 44.97 0.72 -2.42 16 21 F -0.19 -4.21 16.52 44.97 0.74 -3.47 16 22 F -0.19 -4.21 16.52 44.97 0.74 -3.47 16 23 C 0.06 1.09 5.71 -21.38 -0.12 0.97 16 24 C 0.26 5.75 13.17 88.33 1.16 6.92 16 25 N -0.43 -11.40 18.54 19.00 0.35 -11.04 16 26 C -0.14 -2.10 9.60 22.68 0.22 -1.88 16 27 H 0.07 1.41 6.86 -2.39 -0.02 1.40 16 28 H 0.05 1.51 6.62 -2.39 -0.02 1.50 16 29 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.04 1.51 6.62 -2.38 -0.02 1.50 16 32 H 0.07 1.42 6.86 -2.39 -0.02 1.40 16 33 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 34 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 35 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 36 H 0.06 1.54 7.93 -2.39 -0.02 1.52 16 37 H 0.06 1.54 7.95 -2.39 -0.02 1.52 16 38 H 0.41 6.12 6.17 -92.71 -0.57 5.54 16 39 H 0.15 2.13 6.71 -2.91 -0.02 2.12 16 40 H 0.16 1.74 7.14 -2.91 -0.02 1.72 16 41 H 0.16 1.74 8.06 -2.91 -0.02 1.71 16 Total: -1.00 -60.47 354.02 7.91 -52.56 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: 0.52 Total: 4.48 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: 4.27 Total: -13.16 kcal Atomic # 7 Polarization: -77.10 SS G_CDS: -1.11 Total: -78.21 kcal Atomic # 9 Polarization: -11.55 SS G_CDS: 2.20 Total: -9.35 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.68 kcal Total: -60.47 7.91 -52.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340939414.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.976 kcal (2) G-P(sol) polarization free energy of solvation -60.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds