Wall clock time and date at job start Tue Mar 31 2020 15:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47462 * 2 1 4 4 H 1.09003 * 109.47270 * 54.99519 * 3 2 1 5 5 C 1.50693 * 109.47330 * 174.99769 * 3 2 1 6 6 H 1.08007 * 120.00187 * 119.99766 * 5 3 2 7 7 C 1.37879 * 120.00259 * 299.99967 * 5 3 2 8 8 N 1.31512 * 119.99316 * 359.97438 * 7 5 3 9 9 Si 1.86789 * 120.00239 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47191 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47475 * 119.99929 * 9 7 5 12 12 H 1.48506 * 109.46852 * 239.99801 * 9 7 5 13 13 N 1.46503 * 109.46966 * 294.99665 * 3 2 1 14 14 C 1.34780 * 120.00093 * 85.00022 * 13 3 2 15 15 O 1.21589 * 119.99969 * 0.02562 * 14 13 3 16 16 C 1.47608 * 120.00388 * 179.97438 * 14 13 3 17 17 C 1.40288 * 120.50279 * 179.97438 * 16 14 13 18 18 C 1.37948 * 118.36309 * 179.97438 * 17 16 14 19 19 C 1.39186 * 119.26112 * 359.97438 * 18 17 16 20 20 O 1.35494 * 119.52866 * 180.02562 * 19 18 17 21 21 C 1.35890 * 118.00237 * 175.16635 * 20 19 18 22 22 C 1.38744 * 120.05824 * 256.64227 * 21 20 19 23 23 C 1.38145 * 119.94614 * 179.78819 * 22 21 20 24 24 C 1.38277 * 120.05069 * 0.46683 * 23 22 21 25 25 C 1.38267 * 120.11556 * 359.78518 * 24 23 22 26 26 C 1.38135 * 120.05881 * 359.97438 * 25 24 23 27 27 N 1.32425 * 120.94422 * 0.02562 * 19 18 17 28 28 C 1.31657 * 121.79860 * 359.72033 * 27 19 18 29 29 H 1.09002 * 109.47044 * 60.00242 * 1 2 3 30 30 H 1.08996 * 109.47478 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47290 * 300.00753 * 1 2 3 32 32 H 1.09004 * 109.47326 * 239.99228 * 2 1 3 33 33 H 1.08997 * 109.46631 * 119.99936 * 2 1 3 34 34 H 0.97006 * 119.99617 * 180.02562 * 8 7 5 35 35 H 0.96997 * 120.00167 * 264.99768 * 13 3 2 36 36 H 1.08000 * 120.81581 * 0.02562 * 17 16 14 37 37 H 1.07999 * 120.37258 * 179.97438 * 18 17 16 38 38 H 1.08006 * 120.02995 * 0.02562 * 22 21 20 39 39 H 1.07997 * 119.97721 * 180.20556 * 23 22 21 40 40 H 1.08002 * 119.93654 * 179.76681 * 24 23 22 41 41 H 1.08002 * 119.96679 * 180.02562 * 25 24 23 42 42 H 1.08004 * 120.02797 * 179.97438 * 26 25 24 43 43 H 1.08001 * 119.68432 * 180.27289 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8887 -0.6523 7 6 4.1433 0.8783 1.2280 8 7 3.4061 0.3374 2.1733 9 14 6.0048 0.8811 1.3819 10 1 6.5987 1.5461 0.1943 11 1 6.3989 1.6166 2.6103 12 1 6.4969 -0.5177 1.4632 13 7 1.6526 2.0974 -1.2519 14 6 0.4353 2.6644 -1.3671 15 8 -0.3411 2.6327 -0.4319 16 6 0.0450 3.3248 -2.6282 17 6 -1.2195 3.9178 -2.7598 18 6 -1.5379 4.5233 -3.9577 19 6 -0.6022 4.5269 -4.9881 20 8 -0.9090 5.1205 -6.1667 21 6 0.0610 5.1943 -7.1155 22 6 0.7229 6.3927 -7.3409 23 6 1.7117 6.4640 -8.3030 24 6 2.0352 5.3447 -9.0478 25 6 1.3734 4.1506 -8.8287 26 6 0.3873 4.0728 -7.8644 27 7 0.5837 3.9583 -4.8329 28 6 0.9306 3.3738 -3.7054 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5140 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8291 -0.0604 2.9504 35 1 2.2721 2.1230 -1.9978 36 1 -1.9260 3.9013 -1.9431 37 1 -2.5025 4.9894 -4.0945 38 1 0.4680 7.2681 -6.7620 39 1 2.2295 7.3956 -8.4766 40 1 2.8059 5.4035 -9.8021 41 1 1.6283 3.2778 -9.4115 42 1 -0.1295 3.1399 -7.6940 43 1 1.9086 2.9245 -3.6147 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358080170.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:19 Heat of formation + Delta-G solvation = -3.524083 kcal Electronic energy + Delta-G solvation = -26433.597382 eV Core-core repulsion = 22637.495752 eV Total energy + Delta-G solvation = -3796.101630 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.26961 -39.83838 -38.65829 -37.52472 -35.13640 -32.70497 -32.49239 -31.59963 -31.25366 -30.69258 -29.61665 -27.01598 -24.63528 -24.04898 -23.05780 -22.95853 -22.09988 -20.62071 -19.50537 -19.12300 -17.88151 -17.46140 -16.70064 -16.37835 -15.96604 -15.51053 -15.11042 -14.82715 -14.73360 -14.43445 -14.17087 -14.07450 -13.72926 -13.71922 -13.06367 -12.87966 -12.73158 -12.63244 -12.46911 -11.99560 -11.91350 -11.55160 -11.28393 -11.11769 -10.99487 -10.87035 -10.34678 -10.22227 -10.02611 -9.92963 -9.65682 -9.24953 -9.15071 -9.06416 -9.04892 -8.65116 -8.53588 -7.88916 -6.15469 -4.24975 0.71779 0.86158 1.08410 1.12827 2.74199 3.20991 3.22363 3.30452 3.32869 3.61130 3.94851 4.03911 4.08331 4.34256 4.62193 4.62564 4.76684 4.82173 4.86331 4.95149 5.09755 5.16215 5.23920 5.29094 5.44604 5.52485 5.68986 5.78424 6.05623 6.11665 6.13658 6.19856 6.24542 6.37005 6.43345 6.55255 6.63145 7.01449 7.16276 7.20464 7.31336 7.37865 7.58374 7.65964 7.68721 7.86025 8.14215 8.57504 8.72922 9.02263 9.42298 10.89925 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.014419 B = 0.002823 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.437505 B = 9916.569719 C =11227.394647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.052 0.948 5 C -0.535 4.535 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.700 5.700 14 C 0.550 3.450 15 O -0.543 6.543 16 C -0.204 4.204 17 C 0.010 3.990 18 C -0.191 4.191 19 C 0.324 3.676 20 O -0.249 6.249 21 C 0.095 3.905 22 C -0.118 4.118 23 C -0.109 4.109 24 C -0.118 4.118 25 C -0.108 4.108 26 C -0.110 4.110 27 N -0.530 5.530 28 C 0.172 3.828 29 H 0.037 0.963 30 H 0.023 0.977 31 H 0.050 0.950 32 H 0.032 0.968 33 H 0.100 0.900 34 H 0.264 0.736 35 H 0.387 0.613 36 H 0.156 0.844 37 H 0.147 0.853 38 H 0.128 0.872 39 H 0.129 0.871 40 H 0.126 0.874 41 H 0.128 0.872 42 H 0.126 0.874 43 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.782 8.923 -19.933 22.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.069 0.931 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.348 5.348 14 C 0.335 3.665 15 O -0.423 6.423 16 C -0.210 4.210 17 C -0.016 4.016 18 C -0.211 4.211 19 C 0.147 3.853 20 O -0.155 6.155 21 C 0.053 3.947 22 C -0.137 4.137 23 C -0.127 4.127 24 C -0.136 4.136 25 C -0.126 4.126 26 C -0.129 4.129 27 N -0.252 5.252 28 C 0.014 3.986 29 H 0.057 0.943 30 H 0.042 0.958 31 H 0.069 0.931 32 H 0.050 0.950 33 H 0.118 0.882 34 H 0.074 0.926 35 H 0.220 0.780 36 H 0.174 0.826 37 H 0.165 0.835 38 H 0.146 0.854 39 H 0.147 0.853 40 H 0.144 0.856 41 H 0.146 0.854 42 H 0.144 0.856 43 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -5.952 8.920 -19.820 22.535 hybrid contribution 0.885 -0.147 0.373 0.971 sum -5.067 8.772 -19.448 21.928 Atomic orbital electron populations 1.21843 0.98332 0.98118 1.01214 1.21941 0.92638 0.99682 1.02400 1.18846 0.94351 0.89230 0.80683 0.93058 1.21257 0.90604 1.39097 1.06392 0.91975 1.24879 0.98651 0.94746 0.95357 1.69903 1.35073 1.37583 1.09308 0.86400 0.84803 0.77796 0.78156 1.19706 1.20872 1.20858 1.46474 1.14169 1.55428 1.18706 1.17791 0.83130 0.79313 0.86286 1.90758 1.51500 1.60265 1.39737 1.21272 0.96786 1.05556 0.97392 1.21564 0.94931 0.89089 0.95986 1.20996 1.01243 1.06854 0.92032 1.20135 0.90046 0.89986 0.85154 1.84563 1.36511 1.73313 1.21142 1.18522 0.91613 0.94218 0.90382 1.21193 0.95301 0.97572 0.99590 1.21013 0.96926 0.98995 0.95762 1.21235 0.99824 0.92934 0.99656 1.21032 0.95679 0.98153 0.97701 1.21314 0.97639 0.97785 0.96118 1.67324 1.17629 1.13756 1.26497 1.22727 0.98652 0.91272 0.85956 0.94348 0.95794 0.93081 0.94955 0.88177 0.92575 0.77988 0.82639 0.83499 0.85377 0.85339 0.85626 0.85412 0.85639 0.81717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.51 37.16 0.32 -2.70 16 2 C -0.13 -3.04 5.45 -26.73 -0.15 -3.18 16 3 C 0.27 6.60 2.24 -69.09 -0.15 6.45 16 4 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 5 C -0.54 -13.77 8.73 -34.44 -0.30 -14.07 16 6 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.24 11.29 55.43 0.63 -23.61 16 9 Si 0.90 20.28 29.54 -169.99 -5.02 15.26 16 10 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 13 N -0.70 -14.03 4.97 -55.95 -0.28 -14.31 16 14 C 0.55 10.63 6.34 -12.44 -0.08 10.55 16 15 O -0.54 -12.16 13.55 5.29 0.07 -12.09 16 16 C -0.20 -3.16 5.89 -104.82 -0.62 -3.78 16 17 C 0.01 0.14 9.70 -38.92 -0.38 -0.24 16 18 C -0.19 -2.27 10.02 -39.34 -0.39 -2.67 16 19 C 0.32 4.29 7.41 -16.94 -0.13 4.17 16 20 O -0.25 -3.15 9.95 -2.34 -0.02 -3.18 16 21 C 0.09 1.11 5.15 -39.20 -0.20 0.91 16 22 C -0.12 -1.21 9.99 -39.43 -0.39 -1.60 16 23 C -0.11 -0.93 10.04 -39.60 -0.40 -1.32 16 24 C -0.12 -0.96 10.04 -39.56 -0.40 -1.36 16 25 C -0.11 -0.95 10.04 -39.61 -0.40 -1.35 16 26 C -0.11 -1.18 9.56 -39.43 -0.38 -1.56 16 27 N -0.53 -7.45 9.02 -12.96 -0.12 -7.57 16 28 C 0.17 2.41 10.71 -17.14 -0.18 2.22 16 29 H 0.04 0.81 5.65 -51.93 -0.29 0.52 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 1.19 7.84 -51.93 -0.41 0.78 16 32 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 34 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 35 H 0.39 6.69 6.59 -40.82 -0.27 6.42 16 36 H 0.16 1.98 7.73 -52.49 -0.41 1.57 16 37 H 0.15 1.35 8.06 -52.49 -0.42 0.93 16 38 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 39 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 40 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 41 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 42 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 43 H 0.17 2.04 6.41 -52.49 -0.34 1.70 16 LS Contribution 363.19 15.07 5.47 5.47 Total: -1.00 -30.45 363.19 -8.93 -39.38 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -5.34 Total: 8.50 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: -4.32 Total: -7.86 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: 0.23 Total: -45.49 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: 0.05 Total: -15.26 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.45 -8.93 -39.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358080170.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.857 kcal (2) G-P(sol) polarization free energy of solvation -30.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds