Wall clock time and date at job start Tue Mar 31 2020 15:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47462 * 2 1 4 4 H 1.09003 * 109.47270 * 54.99519 * 3 2 1 5 5 C 1.50693 * 109.47330 * 174.99769 * 3 2 1 6 6 H 1.08007 * 120.00187 * 119.99766 * 5 3 2 7 7 C 1.37879 * 120.00259 * 299.99967 * 5 3 2 8 8 N 1.31512 * 119.99316 * 359.97438 * 7 5 3 9 9 Si 1.86789 * 120.00239 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47191 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47475 * 119.99929 * 9 7 5 12 12 H 1.48506 * 109.46852 * 239.99801 * 9 7 5 13 13 N 1.46503 * 109.46966 * 294.99665 * 3 2 1 14 14 C 1.34780 * 120.00093 * 85.00022 * 13 3 2 15 15 O 1.21589 * 119.99969 * 0.02562 * 14 13 3 16 16 C 1.47608 * 120.00388 * 179.97438 * 14 13 3 17 17 C 1.40288 * 120.50279 * 179.97438 * 16 14 13 18 18 C 1.37948 * 118.36309 * 179.97438 * 17 16 14 19 19 C 1.39186 * 119.26112 * 359.97438 * 18 17 16 20 20 O 1.35494 * 119.52866 * 180.02562 * 19 18 17 21 21 C 1.35890 * 118.00237 * 175.16635 * 20 19 18 22 22 C 1.38744 * 120.05824 * 256.64227 * 21 20 19 23 23 C 1.38145 * 119.94614 * 179.78819 * 22 21 20 24 24 C 1.38277 * 120.05069 * 0.46683 * 23 22 21 25 25 C 1.38267 * 120.11556 * 359.78518 * 24 23 22 26 26 C 1.38135 * 120.05881 * 359.97438 * 25 24 23 27 27 N 1.32425 * 120.94422 * 0.02562 * 19 18 17 28 28 C 1.31657 * 121.79860 * 359.72033 * 27 19 18 29 29 H 1.09002 * 109.47044 * 60.00242 * 1 2 3 30 30 H 1.08996 * 109.47478 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47290 * 300.00753 * 1 2 3 32 32 H 1.09004 * 109.47326 * 239.99228 * 2 1 3 33 33 H 1.08997 * 109.46631 * 119.99936 * 2 1 3 34 34 H 0.97006 * 119.99617 * 180.02562 * 8 7 5 35 35 H 0.96997 * 120.00167 * 264.99768 * 13 3 2 36 36 H 1.08000 * 120.81581 * 0.02562 * 17 16 14 37 37 H 1.07999 * 120.37258 * 179.97438 * 18 17 16 38 38 H 1.08006 * 120.02995 * 0.02562 * 22 21 20 39 39 H 1.07997 * 119.97721 * 180.20556 * 23 22 21 40 40 H 1.08002 * 119.93654 * 179.76681 * 24 23 22 41 41 H 1.08002 * 119.96679 * 180.02562 * 25 24 23 42 42 H 1.08004 * 120.02797 * 179.97438 * 26 25 24 43 43 H 1.08001 * 119.68432 * 180.27289 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8887 -0.6523 7 6 4.1433 0.8783 1.2280 8 7 3.4061 0.3374 2.1733 9 14 6.0048 0.8811 1.3819 10 1 6.5987 1.5461 0.1943 11 1 6.3989 1.6166 2.6103 12 1 6.4969 -0.5177 1.4632 13 7 1.6526 2.0974 -1.2519 14 6 0.4353 2.6644 -1.3671 15 8 -0.3411 2.6327 -0.4319 16 6 0.0450 3.3248 -2.6282 17 6 -1.2195 3.9178 -2.7598 18 6 -1.5379 4.5233 -3.9577 19 6 -0.6022 4.5269 -4.9881 20 8 -0.9090 5.1205 -6.1667 21 6 0.0610 5.1943 -7.1155 22 6 0.7229 6.3927 -7.3409 23 6 1.7117 6.4640 -8.3030 24 6 2.0352 5.3447 -9.0478 25 6 1.3734 4.1506 -8.8287 26 6 0.3873 4.0728 -7.8644 27 7 0.5837 3.9583 -4.8329 28 6 0.9306 3.3738 -3.7054 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5140 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8291 -0.0604 2.9504 35 1 2.2721 2.1230 -1.9978 36 1 -1.9260 3.9013 -1.9431 37 1 -2.5025 4.9894 -4.0945 38 1 0.4680 7.2681 -6.7620 39 1 2.2295 7.3956 -8.4766 40 1 2.8059 5.4035 -9.8021 41 1 1.6283 3.2778 -9.4115 42 1 -0.1295 3.1399 -7.6940 43 1 1.9086 2.9245 -3.6147 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358080170.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:18 Heat of formation + Delta-G solvation = -21.915681 kcal Electronic energy + Delta-G solvation = -26434.394902 eV Core-core repulsion = 22637.495752 eV Total energy + Delta-G solvation = -3796.899150 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.26357 -41.03644 -39.87353 -38.45779 -36.94669 -34.41899 -33.65769 -33.18750 -31.99161 -31.89747 -30.61347 -28.87384 -25.88624 -25.10596 -24.79182 -23.68578 -23.05871 -22.15079 -21.25967 -20.03774 -19.43687 -18.51669 -17.80359 -17.45552 -17.24918 -17.05314 -16.35822 -16.30788 -15.90245 -15.80499 -15.24615 -15.17071 -14.89739 -14.59301 -14.40180 -14.33834 -13.93005 -13.88140 -13.53061 -13.42982 -13.22122 -13.15916 -12.87248 -12.69755 -12.56629 -12.14580 -12.05640 -11.87139 -11.58307 -11.14296 -11.09024 -11.03768 -10.63968 -10.50625 -9.94811 -9.93223 -9.71011 -9.54067 -8.15472 -6.32342 -0.40651 0.06444 0.10804 0.39654 1.45006 1.46778 1.57990 1.85516 1.92643 2.33636 2.56405 2.75625 2.88043 3.06516 3.14630 3.66470 3.80155 3.89628 3.95032 3.99584 4.05259 4.22841 4.45833 4.47601 4.50836 4.55971 4.58570 4.59978 4.75968 4.80722 5.01604 5.03336 5.09662 5.25175 5.28454 5.38740 5.42063 5.44542 5.52934 5.55239 5.61170 5.79911 5.82324 5.91560 6.17404 6.28035 6.61857 6.74967 6.92200 7.32733 7.50247 8.90123 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.014419 B = 0.002823 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.437505 B = 9916.569719 C =11227.394647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 C 0.279 3.721 4 H 0.003 0.997 5 C -0.548 4.548 6 H 0.072 0.928 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.968 3.032 10 H -0.261 1.261 11 H -0.285 1.285 12 H -0.279 1.279 13 N -0.698 5.698 14 C 0.552 3.448 15 O -0.579 6.579 16 C -0.221 4.221 17 C 0.012 3.988 18 C -0.180 4.180 19 C 0.322 3.678 20 O -0.251 6.251 21 C 0.064 3.936 22 C -0.131 4.131 23 C -0.110 4.110 24 C -0.116 4.116 25 C -0.112 4.112 26 C -0.125 4.125 27 N -0.538 5.538 28 C 0.178 3.822 29 H 0.042 0.958 30 H 0.045 0.955 31 H 0.028 0.972 32 H 0.041 0.959 33 H 0.073 0.927 34 H 0.265 0.735 35 H 0.401 0.599 36 H 0.161 0.839 37 H 0.177 0.823 38 H 0.134 0.866 39 H 0.155 0.845 40 H 0.155 0.845 41 H 0.149 0.851 42 H 0.121 0.879 43 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.746 9.749 -22.658 25.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.161 4.161 3 C 0.176 3.824 4 H 0.021 0.979 5 C -0.586 4.586 6 H 0.090 0.910 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.793 3.207 10 H -0.185 1.185 11 H -0.211 1.211 12 H -0.205 1.205 13 N -0.347 5.347 14 C 0.339 3.661 15 O -0.461 6.461 16 C -0.227 4.227 17 C -0.013 4.013 18 C -0.200 4.200 19 C 0.145 3.855 20 O -0.156 6.156 21 C 0.022 3.978 22 C -0.149 4.149 23 C -0.128 4.128 24 C -0.133 4.133 25 C -0.129 4.129 26 C -0.144 4.144 27 N -0.261 5.261 28 C 0.021 3.979 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.047 0.953 32 H 0.060 0.940 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.237 0.763 36 H 0.178 0.822 37 H 0.195 0.805 38 H 0.151 0.849 39 H 0.172 0.828 40 H 0.173 0.827 41 H 0.167 0.833 42 H 0.139 0.861 43 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -4.918 9.765 -22.598 25.104 hybrid contribution 0.525 -0.321 1.087 1.249 sum -4.393 9.444 -21.511 23.900 Atomic orbital electron populations 1.21682 0.96957 0.99187 1.00304 1.21794 0.93788 0.99059 1.01413 1.18422 0.93741 0.89222 0.81038 0.97918 1.21602 0.91360 1.38893 1.06737 0.90974 1.25733 1.03159 0.94391 0.95048 1.70050 1.36939 1.38379 1.09846 0.85349 0.79317 0.77800 0.78188 1.18458 1.21103 1.20493 1.46204 1.15075 1.55604 1.17817 1.18259 0.82184 0.78454 0.87153 1.90736 1.52397 1.61561 1.41444 1.20920 0.98325 1.07468 0.96010 1.21669 0.94234 0.88663 0.96778 1.21223 1.02130 1.05853 0.90770 1.20465 0.89958 0.89287 0.85752 1.84575 1.37117 1.72915 1.21018 1.18831 0.92723 0.95343 0.90886 1.21404 0.95803 0.97282 1.00417 1.21383 0.96181 1.00334 0.94878 1.21641 0.99782 0.92283 0.99624 1.21353 0.94922 0.99448 0.97226 1.21422 0.98530 0.97439 0.96990 1.67375 1.18300 1.14175 1.26213 1.22841 0.98819 0.90816 0.85462 0.93875 0.93611 0.95301 0.94005 0.90865 0.92598 0.76292 0.82163 0.80513 0.84858 0.82781 0.82733 0.83322 0.86113 0.80485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.51 8.51 71.98 0.61 -4.90 16 2 C -0.12 -5.90 5.45 30.59 0.17 -5.73 16 3 C 0.28 14.02 2.24 44.24 0.10 14.12 16 4 H 0.00 0.17 7.58 -2.39 -0.02 0.16 16 5 C -0.55 -28.42 8.73 25.60 0.22 -28.20 16 6 H 0.07 3.51 7.74 -2.91 -0.02 3.48 16 7 C 0.02 0.90 5.29 84.66 0.45 1.34 16 8 N -0.91 -51.54 11.29 21.45 0.24 -51.30 16 9 Si 0.97 41.54 29.54 68.60 2.03 43.57 16 10 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 11 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 12 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 13 N -0.70 -28.30 4.97 -449.20 -2.23 -30.53 16 14 C 0.55 21.65 6.34 86.72 0.55 22.20 16 15 O -0.58 -26.76 13.55 -3.99 -0.05 -26.82 16 16 C -0.22 -6.76 5.89 -19.99 -0.12 -6.87 16 17 C 0.01 0.32 9.70 22.70 0.22 0.54 16 18 C -0.18 -3.98 10.02 22.43 0.22 -3.75 16 19 C 0.32 8.12 7.41 84.83 0.63 8.75 16 20 O -0.25 -6.07 9.95 -31.27 -0.31 -6.38 16 21 C 0.06 1.43 5.15 22.51 0.12 1.55 16 22 C -0.13 -2.47 9.99 22.37 0.22 -2.25 16 23 C -0.11 -1.58 10.04 22.26 0.22 -1.35 16 24 C -0.12 -1.52 10.04 22.29 0.22 -1.30 16 25 C -0.11 -1.73 10.04 22.25 0.22 -1.51 16 26 C -0.13 -2.55 9.56 22.37 0.21 -2.34 16 27 N -0.54 -14.51 9.02 -307.78 -2.78 -17.28 16 28 C 0.18 4.84 10.71 85.03 0.91 5.75 16 29 H 0.04 1.85 5.65 -2.39 -0.01 1.83 16 30 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.03 1.37 7.84 -2.39 -0.02 1.35 16 32 H 0.04 1.90 8.14 -2.38 -0.02 1.88 16 33 H 0.07 3.98 5.95 -2.39 -0.01 3.97 16 34 H 0.26 14.14 8.31 -92.70 -0.77 13.37 16 35 H 0.40 13.73 6.59 -92.71 -0.61 13.12 16 36 H 0.16 4.00 7.73 -2.91 -0.02 3.97 16 37 H 0.18 2.79 8.06 -2.91 -0.02 2.77 16 38 H 0.13 2.25 8.06 -2.91 -0.02 2.23 16 39 H 0.15 1.35 8.06 -2.91 -0.02 1.32 16 40 H 0.16 1.11 8.06 -2.91 -0.02 1.08 16 41 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 42 H 0.12 2.45 8.06 -2.91 -0.02 2.43 16 43 H 0.18 4.18 6.41 -2.91 -0.02 4.17 16 Total: -1.00 -67.21 363.19 2.51 -64.70 By element: Atomic # 1 Polarization: 27.56 SS G_CDS: 0.43 Total: 27.99 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: 5.19 Total: -3.95 kcal Atomic # 7 Polarization: -94.35 SS G_CDS: -4.77 Total: -99.12 kcal Atomic # 8 Polarization: -32.83 SS G_CDS: -0.37 Total: -33.20 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Total: -67.21 2.51 -64.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358080170.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.784 kcal (2) G-P(sol) polarization free energy of solvation -67.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds