Wall clock time and date at job start Tue Mar 31 2020 14:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47174 * 2 1 4 4 C 1.50709 * 109.47234 * 119.99880 * 2 1 3 5 5 C 1.38006 * 119.50771 * 275.00069 * 4 2 1 6 6 C 1.39966 * 119.12384 * 179.97438 * 5 4 2 7 7 C 1.48104 * 120.89013 * 180.27791 * 6 5 4 8 8 O 1.21526 * 120.00162 * 359.71273 * 7 6 5 9 9 N 1.34776 * 119.99586 * 179.72094 * 7 6 5 10 10 C 1.39001 * 119.99839 * 175.80491 * 9 7 6 11 11 C 1.38676 * 120.28779 * 34.54885 * 10 9 7 12 12 C 1.38201 * 120.03302 * 180.02562 * 11 10 9 13 13 C 1.38890 * 120.61685 * 0.02562 * 12 11 10 14 14 C 1.36448 * 120.58350 * 0.02562 * 13 12 11 15 15 C 1.40747 * 119.94991 * 359.67806 * 14 13 12 16 16 C 1.41046 * 120.30684 * 180.29650 * 15 14 13 17 17 H 1.07994 * 119.99870 * 214.98036 * 16 15 14 18 18 C 1.39974 * 119.99914 * 34.97834 * 16 15 14 19 19 N 1.30847 * 119.99861 * 355.67045 * 18 16 15 20 20 Si 1.86795 * 120.00034 * 175.67490 * 18 16 15 21 21 H 1.48496 * 109.47486 * 59.99440 * 20 18 16 22 22 H 1.48499 * 109.47166 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.47017 * 299.99728 * 20 18 16 24 24 C 1.39638 * 118.21196 * 359.97438 * 6 5 4 25 25 C 1.38835 * 118.94817 * 0.02562 * 24 6 5 26 26 O 1.35684 * 119.62605 * 180.02562 * 25 24 6 27 27 N 1.31879 * 119.50800 * 94.99775 * 4 2 1 28 28 H 1.09002 * 109.47143 * 299.99632 * 1 2 3 29 29 H 1.08996 * 109.47091 * 60.00426 * 1 2 3 30 30 H 1.08999 * 109.46768 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47433 * 239.99645 * 2 1 3 32 32 H 1.09007 * 109.47555 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47448 * 299.99617 * 3 2 1 34 34 H 1.09004 * 109.47516 * 60.00223 * 3 2 1 35 35 H 1.07999 * 120.43876 * 0.02562 * 5 4 2 36 36 H 0.97001 * 120.00113 * 355.80379 * 9 7 6 37 37 H 1.08000 * 119.98731 * 0.02714 * 11 10 9 38 38 H 1.07995 * 119.69623 * 179.97438 * 12 11 10 39 39 H 1.08001 * 119.70261 * 180.02562 * 13 12 11 40 40 H 1.08001 * 120.02570 * 180.02562 * 14 13 12 41 41 H 0.97002 * 119.99967 * 180.02562 * 19 18 16 42 42 H 1.07999 * 120.53105 * 180.02562 * 24 6 5 43 43 H 0.96699 * 114.00578 * 89.98956 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 2.1603 -0.0121 2.4140 6 6 2.6271 -0.6799 3.5520 7 6 2.7736 0.0298 4.8436 8 8 2.4918 1.2092 4.9242 9 7 3.2195 -0.6323 5.9295 10 6 3.4400 0.0523 7.1190 11 6 2.6237 1.1150 7.4760 12 6 2.8481 1.7923 8.6596 13 6 3.8881 1.4200 9.5014 14 6 4.7073 0.3789 9.1744 15 6 4.4968 -0.3317 7.9779 16 6 5.3352 -1.4131 7.6355 17 1 5.5858 -1.5955 6.6010 18 6 5.8422 -2.2498 8.6365 19 7 5.6086 -1.9798 9.8953 20 14 6.8526 -3.7517 8.1753 21 1 8.0577 -3.3248 7.4200 22 1 7.2693 -4.4658 9.4088 23 1 6.0343 -4.6583 7.3304 24 6 2.9449 -2.0349 3.4384 25 6 2.7868 -2.6615 2.2096 26 8 3.0910 -3.9778 2.0837 27 7 2.3432 -1.9901 1.1604 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.9028 1.0357 2.4616 36 1 3.3864 -1.5866 5.8811 37 1 1.8122 1.4135 6.8289 38 1 2.2093 2.6194 8.9321 39 1 4.0498 1.9594 10.4231 40 1 5.5130 0.0968 9.8359 41 1 5.9603 -2.5595 10.5890 42 1 3.3079 -2.5869 4.2928 43 1 2.3491 -4.5718 2.2625 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361015224.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:59 Heat of formation + Delta-G solvation = -26.394848 kcal Electronic energy + Delta-G solvation = -26871.731231 eV Core-core repulsion = 23074.637850 eV Total energy + Delta-G solvation = -3797.093381 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.94671 -39.45750 -37.69401 -37.22228 -35.18842 -34.00116 -33.70205 -32.58984 -29.73445 -29.55329 -28.51708 -27.38058 -25.48220 -24.62492 -24.05375 -21.85730 -21.22805 -20.62889 -19.41277 -18.52698 -17.62662 -17.19576 -17.01408 -16.05554 -15.71595 -15.51820 -15.15540 -14.73628 -14.64492 -14.42902 -14.29827 -13.82624 -13.61612 -13.13346 -12.75931 -12.74632 -12.51490 -12.36159 -12.12341 -11.98642 -11.82677 -11.58064 -11.36918 -11.31654 -11.22022 -11.06392 -11.04709 -10.54567 -10.28889 -9.90706 -9.89321 -9.73260 -9.41773 -9.27892 -8.99492 -8.92853 -7.38865 -7.05977 -6.70485 -4.53057 0.66151 0.85234 2.57379 2.83201 3.00733 3.02707 3.10750 3.14366 3.42628 3.57600 3.82878 3.85838 4.21743 4.58002 4.65337 4.83814 4.87215 4.93422 5.01367 5.03805 5.28860 5.42710 5.44416 5.52427 5.61929 5.63889 5.68576 5.79519 6.01396 6.04259 6.11448 6.25569 6.31388 6.43264 6.49489 6.84065 6.97528 7.11070 7.18526 7.32593 7.56924 7.62431 7.75839 7.87361 8.01179 8.02972 8.28436 8.46974 8.68122 8.76159 8.89257 10.15060 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.012707 B = 0.003780 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.899902 B = 7405.340535 C = 9273.083948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.044 4.044 3 C -0.152 4.152 4 C 0.153 3.847 5 C -0.126 4.126 6 C -0.056 4.056 7 C 0.538 3.462 8 O -0.527 6.527 9 N -0.622 5.622 10 C 0.014 3.986 11 C -0.090 4.090 12 C -0.216 4.216 13 C -0.116 4.116 14 C -0.139 4.139 15 C 0.100 3.900 16 C -0.472 4.472 17 H 0.074 0.926 18 C 0.075 3.925 19 N -0.805 5.805 20 Si 0.912 3.088 21 H -0.265 1.265 22 H -0.278 1.278 23 H -0.265 1.265 24 C -0.162 4.162 25 C 0.310 3.690 26 O -0.479 6.479 27 N -0.492 5.492 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.091 0.909 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.153 0.847 36 H 0.404 0.596 37 H 0.110 0.890 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.132 0.868 41 H 0.280 0.720 42 H 0.148 0.852 43 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.059 -1.594 -13.557 15.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.064 4.064 3 C -0.209 4.209 4 C 0.015 3.985 5 C -0.147 4.147 6 C -0.067 4.067 7 C 0.324 3.676 8 O -0.405 6.405 9 N -0.264 5.264 10 C -0.079 4.079 11 C -0.110 4.110 12 C -0.236 4.236 13 C -0.135 4.135 14 C -0.159 4.159 15 C 0.097 3.903 16 C -0.502 4.502 17 H 0.093 0.907 18 C -0.142 4.142 19 N -0.431 5.431 20 Si 0.737 3.263 21 H -0.190 1.190 22 H -0.203 1.203 23 H -0.190 1.190 24 C -0.184 4.184 25 C 0.132 3.868 26 O -0.285 6.285 27 N -0.211 5.211 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.110 0.890 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.171 0.829 36 H 0.240 0.760 37 H 0.128 0.872 38 H 0.110 0.890 39 H 0.108 0.892 40 H 0.149 0.851 41 H 0.091 0.909 42 H 0.166 0.834 43 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -6.695 -1.175 -14.144 15.693 hybrid contribution 0.343 -1.208 0.864 1.524 sum -6.352 -2.382 -13.280 14.913 Atomic orbital electron populations 1.21819 0.93413 1.02324 1.02421 1.20075 0.96319 0.95515 0.94460 1.21972 1.01659 0.94570 1.02716 1.20896 0.94525 0.88273 0.94790 1.22126 0.98712 1.02318 0.91496 1.20457 0.97871 0.93234 0.95146 1.18081 0.79734 0.86683 0.83111 1.90733 1.49875 1.15255 1.84639 1.42751 1.62554 1.11882 1.09184 1.17805 0.99387 1.01111 0.89601 1.20656 0.98249 0.96095 0.95984 1.20379 1.02572 1.03590 0.97080 1.20572 0.96706 0.98165 0.98079 1.21196 1.01056 0.94717 0.98962 1.17454 0.88993 0.92016 0.91850 1.19286 1.26482 1.10050 0.94396 0.90746 1.25855 0.94550 0.99262 0.94491 1.69746 1.36897 1.36052 1.00422 0.86291 0.80427 0.80741 0.78836 1.18969 1.20272 1.18957 1.22402 1.02083 0.95183 0.98708 1.18909 0.94449 0.85874 0.87589 1.84813 1.39007 1.12233 1.92489 1.66785 1.11942 1.09784 1.32637 0.92186 0.91708 0.92335 0.89046 0.92143 0.91630 0.91630 0.82935 0.75976 0.87175 0.89005 0.89166 0.85066 0.90853 0.83424 0.74244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.18 37.16 0.34 -0.83 16 2 C -0.04 -0.43 3.23 -91.77 -0.30 -0.73 16 3 C -0.15 -1.30 8.61 37.15 0.32 -0.98 16 4 C 0.15 1.94 5.79 -82.65 -0.48 1.46 16 5 C -0.13 -1.75 8.74 -39.02 -0.34 -2.09 16 6 C -0.06 -0.87 5.91 -104.68 -0.62 -1.49 16 7 C 0.54 10.27 7.63 -12.21 -0.09 10.18 16 8 O -0.53 -11.42 13.85 5.34 0.07 -11.35 16 9 N -0.62 -12.53 4.91 -10.26 -0.05 -12.58 16 10 C 0.01 0.34 6.33 -83.21 -0.53 -0.18 16 11 C -0.09 -2.11 8.68 -39.43 -0.34 -2.45 16 12 C -0.22 -4.90 10.04 -39.35 -0.39 -5.30 16 13 C -0.12 -2.69 9.97 -39.99 -0.40 -3.09 16 14 C -0.14 -3.51 8.61 -39.28 -0.34 -3.85 16 15 C 0.10 2.54 5.56 -106.64 -0.59 1.95 16 16 C -0.47 -11.60 8.22 -37.87 -0.31 -11.91 16 17 H 0.07 1.75 7.63 -52.49 -0.40 1.35 16 18 C 0.07 1.77 5.42 -17.32 -0.09 1.68 16 19 N -0.80 -19.77 10.62 55.55 0.59 -19.18 16 20 Si 0.91 17.84 29.56 -169.99 -5.03 12.82 16 21 H -0.27 -5.22 7.11 56.52 0.40 -4.81 16 22 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 23 H -0.26 -5.05 7.11 56.52 0.40 -4.64 16 24 C -0.16 -2.26 9.55 -38.84 -0.37 -2.63 16 25 C 0.31 4.19 7.74 -17.16 -0.13 4.06 16 26 O -0.48 -5.57 13.56 -18.75 -0.25 -5.82 16 27 N -0.49 -6.79 10.27 -9.60 -0.10 -6.88 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.58 6.48 -51.93 -0.34 0.24 16 35 H 0.15 2.02 5.98 -52.49 -0.31 1.71 16 36 H 0.40 7.30 6.25 -40.82 -0.25 7.04 16 37 H 0.11 2.53 6.19 -52.49 -0.33 2.21 16 38 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 39 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 40 H 0.13 3.40 6.15 -52.49 -0.32 3.08 16 41 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 42 H 0.15 1.88 6.54 -52.49 -0.34 1.54 16 43 H 0.40 2.54 9.06 45.56 0.41 2.96 16 LS Contribution 360.85 15.07 5.44 5.44 Total: -1.00 -30.02 360.85 -8.40 -38.41 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: -4.40 Total: 15.35 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: -4.67 Total: -16.20 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: 0.44 Total: -38.64 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -0.18 Total: -17.17 kcal Atomic # 14 Polarization: 17.84 SS G_CDS: -5.03 Total: 12.82 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.02 -8.40 -38.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361015224.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.018 kcal (2) G-P(sol) polarization free energy of solvation -30.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds