Wall clock time and date at job start Tue Mar 31 2020 14:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47174 * 2 1 4 4 C 1.50709 * 109.47234 * 119.99880 * 2 1 3 5 5 C 1.38006 * 119.50771 * 275.00069 * 4 2 1 6 6 C 1.39966 * 119.12384 * 179.97438 * 5 4 2 7 7 C 1.48104 * 120.89013 * 180.27791 * 6 5 4 8 8 O 1.21526 * 120.00162 * 359.71273 * 7 6 5 9 9 N 1.34776 * 119.99586 * 179.72094 * 7 6 5 10 10 C 1.39001 * 119.99839 * 175.80491 * 9 7 6 11 11 C 1.38676 * 120.28779 * 34.54885 * 10 9 7 12 12 C 1.38201 * 120.03302 * 180.02562 * 11 10 9 13 13 C 1.38890 * 120.61685 * 0.02562 * 12 11 10 14 14 C 1.36448 * 120.58350 * 0.02562 * 13 12 11 15 15 C 1.40747 * 119.94991 * 359.67806 * 14 13 12 16 16 C 1.41046 * 120.30684 * 180.29650 * 15 14 13 17 17 H 1.07994 * 119.99870 * 214.98036 * 16 15 14 18 18 C 1.39974 * 119.99914 * 34.97834 * 16 15 14 19 19 N 1.30847 * 119.99861 * 355.67045 * 18 16 15 20 20 Si 1.86795 * 120.00034 * 175.67490 * 18 16 15 21 21 H 1.48496 * 109.47486 * 59.99440 * 20 18 16 22 22 H 1.48499 * 109.47166 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.47017 * 299.99728 * 20 18 16 24 24 C 1.39638 * 118.21196 * 359.97438 * 6 5 4 25 25 C 1.38835 * 118.94817 * 0.02562 * 24 6 5 26 26 O 1.35684 * 119.62605 * 180.02562 * 25 24 6 27 27 N 1.31879 * 119.50800 * 94.99775 * 4 2 1 28 28 H 1.09002 * 109.47143 * 299.99632 * 1 2 3 29 29 H 1.08996 * 109.47091 * 60.00426 * 1 2 3 30 30 H 1.08999 * 109.46768 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47433 * 239.99645 * 2 1 3 32 32 H 1.09007 * 109.47555 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47448 * 299.99617 * 3 2 1 34 34 H 1.09004 * 109.47516 * 60.00223 * 3 2 1 35 35 H 1.07999 * 120.43876 * 0.02562 * 5 4 2 36 36 H 0.97001 * 120.00113 * 355.80379 * 9 7 6 37 37 H 1.08000 * 119.98731 * 0.02714 * 11 10 9 38 38 H 1.07995 * 119.69623 * 179.97438 * 12 11 10 39 39 H 1.08001 * 119.70261 * 180.02562 * 13 12 11 40 40 H 1.08001 * 120.02570 * 180.02562 * 14 13 12 41 41 H 0.97002 * 119.99967 * 180.02562 * 19 18 16 42 42 H 1.07999 * 120.53105 * 180.02562 * 24 6 5 43 43 H 0.96699 * 114.00578 * 89.98956 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 2.1603 -0.0121 2.4140 6 6 2.6271 -0.6799 3.5520 7 6 2.7736 0.0298 4.8436 8 8 2.4918 1.2092 4.9242 9 7 3.2195 -0.6323 5.9295 10 6 3.4400 0.0523 7.1190 11 6 2.6237 1.1150 7.4760 12 6 2.8481 1.7923 8.6596 13 6 3.8881 1.4200 9.5014 14 6 4.7073 0.3789 9.1744 15 6 4.4968 -0.3317 7.9779 16 6 5.3352 -1.4131 7.6355 17 1 5.5858 -1.5955 6.6010 18 6 5.8422 -2.2498 8.6365 19 7 5.6086 -1.9798 9.8953 20 14 6.8526 -3.7517 8.1753 21 1 8.0577 -3.3248 7.4200 22 1 7.2693 -4.4658 9.4088 23 1 6.0343 -4.6583 7.3304 24 6 2.9449 -2.0349 3.4384 25 6 2.7868 -2.6615 2.2096 26 8 3.0910 -3.9778 2.0837 27 7 2.3432 -1.9901 1.1604 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.9028 1.0357 2.4616 36 1 3.3864 -1.5866 5.8811 37 1 1.8122 1.4135 6.8289 38 1 2.2093 2.6194 8.9321 39 1 4.0498 1.9594 10.4231 40 1 5.5130 0.0968 9.8359 41 1 5.9603 -2.5595 10.5890 42 1 3.3079 -2.5869 4.2928 43 1 2.3491 -4.5718 2.2625 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361015224.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:58 Heat of formation + Delta-G solvation = -46.108164 kcal Electronic energy + Delta-G solvation = -26872.586065 eV Core-core repulsion = 23074.637850 eV Total energy + Delta-G solvation = -3797.948215 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.12118 -40.95376 -39.05495 -38.51381 -36.12562 -35.61066 -35.49766 -33.76418 -31.52468 -30.67386 -30.18771 -28.05812 -27.24312 -25.90273 -25.13710 -23.38003 -22.69816 -22.04569 -20.83236 -19.67562 -19.21050 -18.64555 -18.24676 -17.53227 -16.97928 -16.82157 -16.57146 -16.17089 -15.99735 -15.68378 -15.29549 -15.20544 -14.83878 -14.51276 -14.43256 -14.16187 -13.70748 -13.53744 -13.45455 -13.05011 -12.90344 -12.85656 -12.84302 -12.76567 -12.39004 -12.16046 -12.08283 -12.05392 -11.80326 -11.65906 -11.23071 -11.08226 -11.04700 -10.86562 -10.50494 -9.95717 -9.26452 -8.86001 -8.48668 -6.40257 -0.53586 -0.18115 0.85052 1.06144 1.41605 1.50770 1.52883 1.75241 2.11950 2.21939 2.39142 2.61342 2.78616 3.25698 3.48411 3.66464 3.79817 3.83920 4.00427 4.12332 4.22262 4.33044 4.47096 4.57734 4.60715 4.61786 4.73286 4.80636 4.87643 4.96050 5.00396 5.06614 5.15648 5.16677 5.30166 5.33136 5.38447 5.39453 5.40358 5.74863 5.82056 6.08198 6.15276 6.22440 6.51599 6.56357 6.66664 6.76289 6.91501 6.95282 7.18283 8.38933 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.012707 B = 0.003780 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.899902 B = 7405.340535 C = 9273.083948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.043 4.043 3 C -0.150 4.150 4 C 0.158 3.842 5 C -0.128 4.128 6 C -0.069 4.069 7 C 0.541 3.459 8 O -0.556 6.556 9 N -0.623 5.623 10 C 0.010 3.990 11 C -0.103 4.103 12 C -0.217 4.217 13 C -0.120 4.120 14 C -0.163 4.163 15 C 0.072 3.928 16 C -0.493 4.493 17 H 0.077 0.923 18 C 0.037 3.963 19 N -0.834 5.834 20 Si 0.981 3.019 21 H -0.266 1.266 22 H -0.272 1.272 23 H -0.253 1.253 24 C -0.163 4.163 25 C 0.315 3.685 26 O -0.483 6.483 27 N -0.500 5.500 28 H 0.055 0.945 29 H 0.086 0.914 30 H 0.053 0.947 31 H 0.097 0.903 32 H 0.051 0.949 33 H 0.087 0.913 34 H 0.060 0.940 35 H 0.156 0.844 36 H 0.412 0.588 37 H 0.112 0.888 38 H 0.119 0.881 39 H 0.114 0.886 40 H 0.117 0.883 41 H 0.286 0.714 42 H 0.156 0.844 43 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.522 -2.467 -15.345 17.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.062 4.062 3 C -0.208 4.208 4 C 0.020 3.980 5 C -0.149 4.149 6 C -0.080 4.080 7 C 0.330 3.670 8 O -0.436 6.436 9 N -0.265 5.265 10 C -0.084 4.084 11 C -0.124 4.124 12 C -0.237 4.237 13 C -0.139 4.139 14 C -0.183 4.183 15 C 0.069 3.931 16 C -0.523 4.523 17 H 0.095 0.905 18 C -0.177 4.177 19 N -0.461 5.461 20 Si 0.802 3.198 21 H -0.190 1.190 22 H -0.197 1.197 23 H -0.177 1.177 24 C -0.184 4.184 25 C 0.136 3.864 26 O -0.294 6.294 27 N -0.220 5.220 28 H 0.074 0.926 29 H 0.105 0.895 30 H 0.072 0.928 31 H 0.115 0.885 32 H 0.070 0.930 33 H 0.106 0.894 34 H 0.079 0.921 35 H 0.173 0.827 36 H 0.250 0.750 37 H 0.130 0.870 38 H 0.137 0.863 39 H 0.132 0.868 40 H 0.135 0.865 41 H 0.096 0.904 42 H 0.174 0.826 43 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -7.183 -2.072 -15.940 17.606 hybrid contribution 0.424 -0.907 1.361 1.690 sum -6.759 -2.979 -14.579 16.343 Atomic orbital electron populations 1.21808 0.92139 1.02316 1.03346 1.20199 0.97254 0.95731 0.93036 1.21976 1.01147 0.94015 1.03628 1.21371 0.93304 0.87958 0.95366 1.22222 0.98616 1.02566 0.91451 1.20173 1.00119 0.93988 0.93736 1.18544 0.78241 0.86439 0.83818 1.90701 1.50971 1.16621 1.85274 1.42721 1.62894 1.12253 1.08670 1.17951 0.98831 1.01160 0.90468 1.20845 0.98512 0.96477 0.96519 1.20709 1.02506 1.03945 0.96510 1.20815 0.96314 0.97690 0.99056 1.21219 1.01699 0.96013 0.99418 1.17771 0.90012 0.92794 0.92550 1.19481 1.27348 1.10587 0.94908 0.90450 1.26670 0.95162 1.01749 0.94141 1.69824 1.37653 1.37219 1.01385 0.85256 0.78684 0.77184 0.78701 1.19040 1.19700 1.17725 1.22446 1.02038 0.94506 0.99452 1.18959 0.93608 0.86624 0.87206 1.84763 1.40557 1.11651 1.92394 1.66920 1.12145 1.10206 1.32702 0.92582 0.89504 0.92800 0.88503 0.92964 0.89372 0.92092 0.82661 0.75012 0.86983 0.86325 0.86756 0.86512 0.90352 0.82614 0.71528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.18 71.98 0.66 -1.31 16 2 C -0.04 -0.74 3.23 -11.54 -0.04 -0.78 16 3 C -0.15 -2.30 8.61 71.98 0.62 -1.68 16 4 C 0.16 3.77 5.79 42.50 0.25 4.02 16 5 C -0.13 -3.46 8.74 22.63 0.20 -3.26 16 6 C -0.07 -2.14 5.91 -19.90 -0.12 -2.25 16 7 C 0.54 20.88 7.63 86.86 0.66 21.54 16 8 O -0.56 -24.42 13.85 -3.80 -0.05 -24.47 16 9 N -0.62 -25.43 4.91 -304.66 -1.50 -26.93 16 10 C 0.01 0.49 6.33 38.91 0.25 0.74 16 11 C -0.10 -4.89 8.68 22.37 0.19 -4.70 16 12 C -0.22 -9.76 10.04 22.42 0.22 -9.53 16 13 C -0.12 -5.57 9.97 22.01 0.22 -5.35 16 14 C -0.16 -8.44 8.61 22.46 0.19 -8.24 16 15 C 0.07 3.75 5.56 -21.17 -0.12 3.63 16 16 C -0.49 -24.65 8.22 23.38 0.19 -24.46 16 17 H 0.08 3.69 7.63 -2.91 -0.02 3.66 16 18 C 0.04 1.73 5.42 85.26 0.46 2.20 16 19 N -0.83 -41.61 10.62 21.83 0.23 -41.38 16 20 Si 0.98 36.21 29.56 68.60 2.03 38.24 16 21 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 22 H -0.27 -9.73 7.11 99.48 0.71 -9.02 16 23 H -0.25 -8.82 7.11 99.48 0.71 -8.11 16 24 C -0.16 -4.38 9.55 22.75 0.22 -4.16 16 25 C 0.31 7.98 7.74 84.78 0.66 8.64 16 26 O -0.48 -10.18 13.56 -90.02 -1.22 -11.40 16 27 N -0.50 -12.92 10.27 -297.15 -3.05 -15.97 16 28 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 33 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.06 0.99 6.48 -2.38 -0.02 0.98 16 35 H 0.16 4.07 5.98 -2.91 -0.02 4.05 16 36 H 0.41 15.05 6.25 -92.71 -0.58 14.47 16 37 H 0.11 5.20 6.19 -2.91 -0.02 5.18 16 38 H 0.12 4.60 8.06 -2.91 -0.02 4.58 16 39 H 0.11 4.61 8.06 -2.91 -0.02 4.59 16 40 H 0.12 6.28 6.15 -2.91 -0.02 6.26 16 41 H 0.29 13.06 8.30 -92.71 -0.77 12.29 16 42 H 0.16 3.84 6.54 -2.91 -0.02 3.82 16 43 H 0.42 4.33 9.06 -74.06 -0.67 3.66 16 Total: -1.00 -64.67 360.85 0.99 -63.68 By element: Atomic # 1 Polarization: 43.38 SS G_CDS: -0.17 Total: 43.21 kcal Atomic # 6 Polarization: -29.70 SS G_CDS: 4.72 Total: -24.98 kcal Atomic # 7 Polarization: -79.96 SS G_CDS: -4.32 Total: -84.28 kcal Atomic # 8 Polarization: -34.59 SS G_CDS: -1.27 Total: -35.86 kcal Atomic # 14 Polarization: 36.21 SS G_CDS: 2.03 Total: 38.24 kcal Total: -64.67 0.99 -63.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361015224.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.570 kcal (2) G-P(sol) polarization free energy of solvation -64.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds