Wall clock time and date at job start Tue Mar 31 2020 14:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52991 * 109.47058 * 2 1 4 4 C 1.53004 * 109.47087 * 239.99425 * 2 1 3 5 5 C 1.50702 * 109.46745 * 60.00456 * 4 2 1 6 6 H 1.08000 * 120.00045 * 359.97438 * 5 4 2 7 7 C 1.37873 * 119.99583 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99804 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 120.00294 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.47319 * 90.00084 * 9 7 5 11 11 H 1.48501 * 109.47531 * 210.00088 * 9 7 5 12 12 H 1.48504 * 109.47146 * 329.99719 * 9 7 5 13 13 C 1.53001 * 109.47048 * 119.99920 * 2 1 3 14 14 N 1.46504 * 109.46745 * 300.00302 * 13 2 1 15 15 C 1.34778 * 119.99932 * 180.02562 * 14 13 2 16 16 O 1.21590 * 119.99715 * 359.97438 * 15 14 13 17 17 N 1.34775 * 120.00119 * 179.97438 * 15 14 13 18 18 C 1.47026 * 125.64611 * 179.97438 * 17 15 14 19 19 C 1.54330 * 107.26840 * 181.02123 * 18 17 15 20 20 F 1.39901 * 110.71874 * 140.55610 * 19 18 17 21 21 F 1.39897 * 110.72023 * 263.82900 * 19 18 17 22 22 C 1.55164 * 102.94081 * 22.19556 * 19 18 17 23 23 F 1.39902 * 110.99772 * 206.42355 * 22 19 18 24 24 F 1.39893 * 111.04014 * 82.58538 * 22 19 18 25 25 C 1.47422 * 125.64887 * 359.95545 * 17 15 14 26 26 H 1.09001 * 109.47236 * 300.00057 * 1 2 3 27 27 H 1.08996 * 109.46834 * 60.00402 * 1 2 3 28 28 H 1.09004 * 109.46942 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47228 * 179.97438 * 3 2 1 30 30 H 1.09006 * 109.46895 * 299.99372 * 3 2 1 31 31 H 1.08995 * 109.47813 * 59.99778 * 3 2 1 32 32 H 1.09001 * 109.46616 * 180.02562 * 4 2 1 33 33 H 1.08998 * 109.47387 * 300.00422 * 4 2 1 34 34 H 0.97006 * 120.00147 * 180.02562 * 8 7 5 35 35 H 1.08993 * 109.47635 * 180.02562 * 13 2 1 36 36 H 1.09000 * 109.47584 * 59.99644 * 13 2 1 37 37 H 0.96996 * 120.00577 * 359.97438 * 14 13 2 38 38 H 1.08998 * 109.88351 * 300.43722 * 18 17 15 39 39 H 1.08998 * 109.88379 * 61.60512 * 18 17 15 40 40 H 1.08996 * 110.36785 * 274.74511 * 25 17 15 41 41 H 1.09004 * 110.36699 * 36.95923 * 25 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.5377 -0.0110 -2.4797 6 1 0.9166 0.8669 -2.3806 7 6 1.8713 -0.4818 -3.7319 8 7 1.4325 0.1378 -4.8057 9 14 2.9463 -1.9998 -3.9032 10 1 2.0886 -3.2113 -3.9487 11 1 3.7383 -1.9068 -5.1559 12 1 3.8667 -2.0883 -2.7412 13 6 2.0400 -0.7212 1.2493 14 7 1.5516 -0.0306 2.4454 15 6 1.8775 -0.4907 3.6696 16 8 2.5766 -1.4792 3.7811 17 7 1.4286 0.1450 4.7699 18 6 1.7062 -0.2476 6.1594 19 6 0.9678 0.7523 7.0741 20 9 0.4103 0.0958 8.1766 21 9 1.8293 1.7738 7.4882 22 6 -0.1445 1.3134 6.1492 23 9 -0.5273 2.5985 6.5482 24 9 -1.2474 0.4536 6.1114 25 6 0.5783 1.3492 4.7798 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9562 -0.8901 31 1 1.6767 1.9563 0.8899 32 1 3.1301 -0.7217 -1.2489 33 1 1.6767 -1.7490 -1.2492 34 1 1.6669 -0.1936 -5.6868 35 1 3.1300 -0.7209 1.2496 36 1 1.6767 -1.7489 1.2494 37 1 0.9942 0.7582 2.3564 38 1 1.3376 -1.2573 6.3400 39 1 2.7784 -0.2024 6.3502 40 1 1.1909 2.2469 4.6978 41 1 -0.1456 1.3091 3.9657 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458768136.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:37 Heat of formation + Delta-G solvation = -218.765974 kcal Electronic energy + Delta-G solvation = -28983.224678 eV Core-core repulsion = 24205.163494 eV Total energy + Delta-G solvation = -4778.061184 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.136 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.33060 -49.18841 -48.32077 -47.62293 -40.54119 -37.97416 -36.89132 -33.90368 -32.23965 -30.83706 -29.68754 -27.87084 -26.65033 -26.37122 -24.55671 -22.67764 -22.30740 -20.62064 -19.55982 -19.14497 -18.34744 -17.90445 -17.55315 -17.20656 -16.84086 -16.78449 -16.27304 -15.77721 -15.18389 -14.89940 -14.69461 -14.58908 -14.46611 -14.23670 -14.20964 -14.08141 -13.95740 -13.62955 -13.57163 -13.44590 -13.21631 -12.83309 -12.67882 -12.42519 -12.31666 -11.38356 -11.32505 -11.21616 -11.07059 -10.68290 -10.57596 -10.51042 -10.05351 -9.80130 -9.62056 -9.50603 -9.05941 -8.92327 -8.57761 -6.08464 -4.06287 1.78577 1.86778 2.51907 2.66993 2.90154 3.15744 3.27049 3.28597 3.37015 3.40248 3.68745 3.90836 4.02949 4.41820 4.46831 4.71442 4.81568 4.88229 5.18822 5.23629 5.32926 5.43686 5.53067 5.99679 6.00281 6.01084 6.21457 6.32633 6.44534 6.51155 6.57243 6.80740 6.94056 6.97473 7.13132 7.29641 7.62528 7.74033 8.29140 8.47749 8.95068 9.53998 11.04163 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.027620 B = 0.002693 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.530206 B =10394.061706 C =10831.052385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.064 4.064 3 C -0.128 4.128 4 C -0.001 4.001 5 C -0.513 4.513 6 H 0.078 0.922 7 C 0.067 3.933 8 N -0.903 5.903 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.142 3.858 14 N -0.728 5.728 15 C 0.729 3.271 16 O -0.573 6.573 17 N -0.637 5.637 18 C 0.096 3.904 19 C 0.252 3.748 20 F -0.162 7.162 21 F -0.159 7.159 22 C 0.251 3.749 23 F -0.161 7.161 24 F -0.156 7.156 25 C 0.067 3.933 26 H 0.028 0.972 27 H 0.074 0.926 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.074 0.926 31 H 0.029 0.971 32 H 0.019 0.981 33 H 0.015 0.985 34 H 0.263 0.737 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.396 0.604 38 H 0.114 0.886 39 H 0.113 0.887 40 H 0.116 0.884 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.384 3.779 24.021 24.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.064 4.064 3 C -0.186 4.186 4 C -0.039 4.039 5 C -0.550 4.550 6 H 0.096 0.904 7 C -0.134 4.134 8 N -0.542 5.542 9 Si 0.702 3.298 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C 0.019 3.981 14 N -0.383 5.383 15 C 0.431 3.569 16 O -0.449 6.449 17 N -0.379 5.379 18 C -0.029 4.029 19 C 0.214 3.786 20 F -0.142 7.142 21 F -0.139 7.139 22 C 0.212 3.788 23 F -0.142 7.142 24 F -0.137 7.137 25 C -0.058 4.058 26 H 0.047 0.953 27 H 0.093 0.907 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.093 0.907 31 H 0.048 0.952 32 H 0.037 0.963 33 H 0.033 0.967 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.232 0.768 38 H 0.132 0.868 39 H 0.131 0.869 40 H 0.134 0.866 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.832 2.981 23.821 24.077 hybrid contribution 0.021 -0.235 0.062 0.244 sum -1.811 2.746 23.883 24.109 Atomic orbital electron populations 1.21782 0.94718 1.01387 1.00715 1.20726 0.95894 0.95998 0.93791 1.21773 1.00566 0.95492 1.00731 1.19588 0.96357 0.95524 0.92437 1.21058 1.31958 1.13432 0.88588 0.90384 1.24996 0.95672 0.96746 0.95976 1.69900 1.45832 1.40554 0.97917 0.86860 0.81328 0.83882 0.77701 1.20351 1.21495 1.18962 1.21644 0.98961 0.95827 0.81650 1.45377 1.55655 1.33234 1.04033 1.15278 0.80143 0.82175 0.79287 1.90979 1.42255 1.26708 1.84936 1.47150 1.55636 1.30257 1.04863 1.22612 1.02716 0.97984 0.79567 1.22481 0.87464 0.84537 0.84140 1.93140 1.85095 1.80807 1.55185 1.93145 1.69776 1.59805 1.91210 1.22594 0.83951 0.75690 0.96586 1.93137 1.92129 1.37423 1.91472 1.93150 1.54456 1.69148 1.96930 1.23195 0.95640 0.91808 0.95141 0.95252 0.90734 0.93249 0.93261 0.90741 0.95210 0.96264 0.96713 0.92746 0.91527 0.91548 0.76785 0.86792 0.86944 0.86588 0.86416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.06 8.05 37.16 0.30 -1.76 16 2 C -0.06 -1.08 0.54 -154.51 -0.08 -1.16 16 3 C -0.13 -2.04 8.05 37.15 0.30 -1.74 16 4 C 0.00 -0.03 3.11 -27.88 -0.09 -0.11 16 5 C -0.51 -13.23 8.20 -34.44 -0.28 -13.51 16 6 H 0.08 2.13 5.92 -52.49 -0.31 1.82 16 7 C 0.07 1.86 5.47 -17.82 -0.10 1.76 16 8 N -0.90 -26.65 13.96 55.43 0.77 -25.87 16 9 Si 0.87 20.97 27.47 -169.99 -4.67 16.30 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.27 -6.12 6.54 56.52 0.37 -5.75 16 13 C 0.14 2.17 4.56 -4.04 -0.02 2.16 16 14 N -0.73 -9.07 4.92 -65.22 -0.32 -9.39 16 15 C 0.73 9.58 8.49 -86.92 -0.74 8.85 16 16 O -0.57 -9.74 16.67 5.29 0.09 -9.65 16 17 N -0.64 -6.10 3.33 -176.25 -0.59 -6.69 16 18 C 0.10 0.78 6.51 -3.06 -0.02 0.76 16 19 C 0.25 2.03 2.36 -24.89 -0.06 1.97 16 20 F -0.16 -1.45 16.92 2.25 0.04 -1.41 16 21 F -0.16 -1.34 16.91 2.25 0.04 -1.30 16 22 C 0.25 2.00 2.42 -24.59 -0.06 1.94 16 23 F -0.16 -1.37 16.96 2.25 0.04 -1.34 16 24 F -0.16 -1.46 16.97 2.25 0.04 -1.42 16 25 C 0.07 0.46 6.20 -2.54 -0.02 0.44 16 26 H 0.03 0.37 6.86 -51.93 -0.36 0.01 16 27 H 0.07 1.36 6.62 -51.93 -0.34 1.02 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 1.36 6.62 -51.93 -0.34 1.01 16 31 H 0.03 0.37 6.86 -51.93 -0.36 0.01 16 32 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 33 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 34 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.40 4.04 4.64 -40.82 -0.19 3.85 16 38 H 0.11 0.90 8.10 -51.93 -0.42 0.48 16 39 H 0.11 0.84 8.11 -51.93 -0.42 0.42 16 40 H 0.12 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.12 0.66 7.29 -51.93 -0.38 0.28 16 LS Contribution 343.61 15.07 5.18 5.18 Total: -1.00 -30.98 343.61 -5.41 -36.40 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -5.17 Total: -0.40 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: -0.86 Total: -0.41 kcal Atomic # 7 Polarization: -41.81 SS G_CDS: -0.13 Total: -41.95 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.09 Total: -9.65 kcal Atomic # 9 Polarization: -5.62 SS G_CDS: 0.15 Total: -5.46 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.67 Total: 16.30 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.98 -5.41 -36.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458768136.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -182.369 kcal (2) G-P(sol) polarization free energy of solvation -30.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds