Wall clock time and date at job start Tue Mar 31 2020 14:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52991 * 109.47058 * 2 1 4 4 C 1.53004 * 109.47087 * 239.99425 * 2 1 3 5 5 C 1.50702 * 109.46745 * 60.00456 * 4 2 1 6 6 H 1.08000 * 120.00045 * 359.97438 * 5 4 2 7 7 C 1.37873 * 119.99583 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99804 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 120.00294 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.47319 * 90.00084 * 9 7 5 11 11 H 1.48501 * 109.47531 * 210.00088 * 9 7 5 12 12 H 1.48504 * 109.47146 * 329.99719 * 9 7 5 13 13 C 1.53001 * 109.47048 * 119.99920 * 2 1 3 14 14 N 1.46504 * 109.46745 * 300.00302 * 13 2 1 15 15 C 1.34778 * 119.99932 * 180.02562 * 14 13 2 16 16 O 1.21590 * 119.99715 * 359.97438 * 15 14 13 17 17 N 1.34775 * 120.00119 * 179.97438 * 15 14 13 18 18 C 1.47026 * 125.64611 * 179.97438 * 17 15 14 19 19 C 1.54330 * 107.26840 * 181.02123 * 18 17 15 20 20 F 1.39901 * 110.71874 * 140.55610 * 19 18 17 21 21 F 1.39897 * 110.72023 * 263.82900 * 19 18 17 22 22 C 1.55164 * 102.94081 * 22.19556 * 19 18 17 23 23 F 1.39902 * 110.99772 * 206.42355 * 22 19 18 24 24 F 1.39893 * 111.04014 * 82.58538 * 22 19 18 25 25 C 1.47422 * 125.64887 * 359.95545 * 17 15 14 26 26 H 1.09001 * 109.47236 * 300.00057 * 1 2 3 27 27 H 1.08996 * 109.46834 * 60.00402 * 1 2 3 28 28 H 1.09004 * 109.46942 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47228 * 179.97438 * 3 2 1 30 30 H 1.09006 * 109.46895 * 299.99372 * 3 2 1 31 31 H 1.08995 * 109.47813 * 59.99778 * 3 2 1 32 32 H 1.09001 * 109.46616 * 180.02562 * 4 2 1 33 33 H 1.08998 * 109.47387 * 300.00422 * 4 2 1 34 34 H 0.97006 * 120.00147 * 180.02562 * 8 7 5 35 35 H 1.08993 * 109.47635 * 180.02562 * 13 2 1 36 36 H 1.09000 * 109.47584 * 59.99644 * 13 2 1 37 37 H 0.96996 * 120.00577 * 359.97438 * 14 13 2 38 38 H 1.08998 * 109.88351 * 300.43722 * 18 17 15 39 39 H 1.08998 * 109.88379 * 61.60512 * 18 17 15 40 40 H 1.08996 * 110.36785 * 274.74511 * 25 17 15 41 41 H 1.09004 * 110.36699 * 36.95923 * 25 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.5377 -0.0110 -2.4797 6 1 0.9166 0.8669 -2.3806 7 6 1.8713 -0.4818 -3.7319 8 7 1.4325 0.1378 -4.8057 9 14 2.9463 -1.9998 -3.9032 10 1 2.0886 -3.2113 -3.9487 11 1 3.7383 -1.9068 -5.1559 12 1 3.8667 -2.0883 -2.7412 13 6 2.0400 -0.7212 1.2493 14 7 1.5516 -0.0306 2.4454 15 6 1.8775 -0.4907 3.6696 16 8 2.5766 -1.4792 3.7811 17 7 1.4286 0.1450 4.7699 18 6 1.7062 -0.2476 6.1594 19 6 0.9678 0.7523 7.0741 20 9 0.4103 0.0958 8.1766 21 9 1.8293 1.7738 7.4882 22 6 -0.1445 1.3134 6.1492 23 9 -0.5273 2.5985 6.5482 24 9 -1.2474 0.4536 6.1114 25 6 0.5783 1.3492 4.7798 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9562 -0.8901 31 1 1.6767 1.9563 0.8899 32 1 3.1301 -0.7217 -1.2489 33 1 1.6767 -1.7490 -1.2492 34 1 1.6669 -0.1936 -5.6868 35 1 3.1300 -0.7209 1.2496 36 1 1.6767 -1.7489 1.2494 37 1 0.9942 0.7582 2.3564 38 1 1.3376 -1.2573 6.3400 39 1 2.7784 -0.2024 6.3502 40 1 1.1909 2.2469 4.6978 41 1 -0.1456 1.3091 3.9657 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458768136.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:36 Heat of formation + Delta-G solvation = -237.978270 kcal Electronic energy + Delta-G solvation = -28984.057785 eV Core-core repulsion = 24205.163494 eV Total energy + Delta-G solvation = -4778.894292 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.136 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.98057 -49.84195 -48.97741 -48.28056 -41.50360 -39.12580 -37.93747 -35.29169 -34.05407 -31.68367 -30.33900 -29.62544 -27.95847 -27.53552 -25.44830 -24.15528 -23.14857 -21.57588 -20.49261 -19.79981 -19.46579 -18.88099 -18.67536 -18.34136 -17.92384 -17.47764 -17.14701 -16.76039 -16.22527 -15.84209 -15.74273 -15.49517 -15.40763 -15.34570 -15.24884 -14.92389 -14.88670 -14.67299 -14.54400 -14.29884 -14.16417 -14.14407 -13.83912 -13.77048 -13.31808 -12.91686 -12.82333 -12.58870 -12.27643 -12.14202 -12.03704 -11.76781 -11.58486 -11.48932 -11.16517 -10.88960 -10.68289 -10.43525 -9.88193 -8.20315 -6.20275 0.96213 1.24646 1.38081 1.41308 1.50546 1.84022 1.96084 2.09311 2.41134 2.45490 2.61285 2.83127 3.15709 3.28137 3.44083 3.90019 3.97276 4.08745 4.17320 4.18412 4.22605 4.27584 4.57502 4.65704 4.74235 4.79608 4.97508 5.03681 5.12899 5.31981 5.34218 5.44671 5.45737 5.55164 5.60262 5.72798 5.79647 6.40149 6.69793 6.87280 7.31354 7.42727 8.95230 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.027620 B = 0.002693 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.530206 B =10394.061706 C =10831.052385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.058 4.058 3 C -0.124 4.124 4 C -0.004 4.004 5 C -0.500 4.500 6 H 0.053 0.947 7 C 0.005 3.995 8 N -0.952 5.952 9 Si 0.933 3.067 10 H -0.273 1.273 11 H -0.291 1.291 12 H -0.249 1.249 13 C 0.156 3.844 14 N -0.718 5.718 15 C 0.732 3.268 16 O -0.614 6.614 17 N -0.633 5.633 18 C 0.095 3.905 19 C 0.257 3.743 20 F -0.168 7.168 21 F -0.160 7.160 22 C 0.251 3.749 23 F -0.163 7.163 24 F -0.165 7.165 25 C 0.065 3.935 26 H 0.068 0.932 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.044 0.956 31 H 0.070 0.930 32 H 0.017 0.983 33 H 0.014 0.986 34 H 0.262 0.738 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.409 0.591 38 H 0.116 0.884 39 H 0.120 0.880 40 H 0.142 0.858 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.206 3.907 26.100 26.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.059 4.059 3 C -0.181 4.181 4 C -0.042 4.042 5 C -0.539 4.539 6 H 0.071 0.929 7 C -0.191 4.191 8 N -0.594 5.594 9 Si 0.758 3.242 10 H -0.198 1.198 11 H -0.218 1.218 12 H -0.173 1.173 13 C 0.032 3.968 14 N -0.374 5.374 15 C 0.434 3.566 16 O -0.494 6.494 17 N -0.373 5.373 18 C -0.030 4.030 19 C 0.218 3.782 20 F -0.148 7.148 21 F -0.140 7.140 22 C 0.212 3.788 23 F -0.144 7.144 24 F -0.146 7.146 25 C -0.058 4.058 26 H 0.087 0.913 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.035 0.965 33 H 0.032 0.968 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.248 0.752 38 H 0.134 0.866 39 H 0.138 0.862 40 H 0.160 0.840 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.680 3.147 25.950 26.194 hybrid contribution -0.098 -0.192 -0.491 0.536 sum -1.778 2.955 25.459 25.691 Atomic orbital electron populations 1.21716 0.93892 1.01332 1.01243 1.20574 0.96499 0.96242 0.92578 1.21705 1.00379 0.94754 1.01284 1.19569 0.96084 0.95527 0.92998 1.21383 1.30113 1.12285 0.90072 0.92880 1.25826 0.97474 0.99852 0.95946 1.70043 1.48217 1.42717 0.98442 0.85917 0.79915 0.80424 0.77929 1.19827 1.21753 1.17283 1.21244 0.98436 0.95333 0.81778 1.45053 1.55758 1.33444 1.03182 1.15236 0.79781 0.81756 0.79807 1.90958 1.44134 1.28635 1.85655 1.46954 1.55241 1.30684 1.04465 1.22689 1.03309 0.98137 0.78833 1.22447 0.87464 0.84367 0.83894 1.93130 1.85184 1.80982 1.55553 1.93146 1.69845 1.59823 1.91234 1.22669 0.83604 0.75358 0.97135 1.93135 1.92149 1.37534 1.91559 1.93137 1.54972 1.69458 1.96991 1.23477 0.95945 0.91421 0.94972 0.91275 0.93637 0.93608 0.93540 0.93665 0.91162 0.96516 0.96754 0.92940 0.92223 0.92327 0.75233 0.86607 0.86159 0.84034 0.84559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.76 8.05 71.98 0.58 -3.18 16 2 C -0.06 -1.88 0.54 -52.18 -0.03 -1.91 16 3 C -0.12 -3.70 8.05 71.98 0.58 -3.12 16 4 C 0.00 -0.16 3.11 29.85 0.09 -0.07 16 5 C -0.50 -26.17 8.20 25.60 0.21 -25.96 16 6 H 0.05 2.99 5.92 -2.91 -0.02 2.97 16 7 C 0.01 0.29 5.47 84.65 0.46 0.75 16 8 N -0.95 -57.73 13.96 21.45 0.30 -57.43 16 9 Si 0.93 43.30 27.47 68.60 1.88 45.18 16 10 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 12 H -0.25 -10.81 6.54 99.48 0.65 -10.16 16 13 C 0.16 4.42 4.56 86.38 0.39 4.82 16 14 N -0.72 -15.55 4.92 -478.53 -2.35 -17.90 16 15 C 0.73 17.29 8.49 179.05 1.52 18.81 16 16 O -0.61 -19.86 16.67 -4.00 -0.07 -19.92 16 17 N -0.63 -10.24 3.33 -829.78 -2.76 -13.00 16 18 C 0.09 1.34 6.51 86.73 0.56 1.90 16 19 C 0.26 3.56 2.36 31.79 0.08 3.63 16 20 F -0.17 -2.73 16.92 44.97 0.76 -1.97 16 21 F -0.16 -2.33 16.91 44.97 0.76 -1.57 16 22 C 0.25 3.33 2.42 31.98 0.08 3.40 16 23 F -0.16 -2.36 16.96 44.97 0.76 -1.60 16 24 F -0.16 -2.70 16.97 44.97 0.76 -1.94 16 25 C 0.07 0.65 6.20 86.85 0.54 1.19 16 26 H 0.07 1.51 6.86 -2.39 -0.02 1.49 16 27 H 0.04 1.64 6.62 -2.39 -0.02 1.63 16 28 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.04 1.62 6.62 -2.38 -0.02 1.60 16 31 H 0.07 1.50 6.86 -2.39 -0.02 1.49 16 32 H 0.02 0.72 7.20 -2.39 -0.02 0.70 16 33 H 0.01 0.61 7.57 -2.39 -0.02 0.59 16 34 H 0.26 15.04 8.31 -92.70 -0.77 14.27 16 35 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.41 6.55 4.64 -92.71 -0.43 6.12 16 38 H 0.12 1.64 8.10 -2.39 -0.02 1.62 16 39 H 0.12 1.55 8.11 -2.39 -0.02 1.53 16 40 H 0.14 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.14 0.90 7.29 -2.38 -0.02 0.88 16 Total: -1.00 -68.28 343.61 5.71 -62.57 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: 0.59 Total: 7.32 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: 5.07 Total: 0.27 kcal Atomic # 7 Polarization: -83.53 SS G_CDS: -4.81 Total: -88.34 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -0.07 Total: -19.92 kcal Atomic # 9 Polarization: -10.12 SS G_CDS: 3.05 Total: -7.08 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 1.88 Total: 45.18 kcal Total: -68.28 5.71 -62.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458768136.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -175.404 kcal (2) G-P(sol) polarization free energy of solvation -68.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -243.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -237.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds