Wall clock time and date at job start Tue Mar 31 2020 15:05:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53010 * 1
3 3 C 1.52996 * 109.47320 * 2 1
4 4 H 1.08999 * 109.46910 * 54.99611 * 3 2 1
5 5 C 1.50700 * 109.47278 * 175.00183 * 3 2 1
6 6 H 1.07998 * 119.99690 * 119.99771 * 5 3 2
7 7 C 1.37876 * 119.99709 * 300.00218 * 5 3 2
8 8 N 1.31515 * 120.00442 * 359.97438 * 7 5 3
9 9 Si 1.86804 * 119.99723 * 180.02562 * 7 5 3
10 10 H 1.48501 * 109.47070 * 89.99945 * 9 7 5
11 11 H 1.48502 * 109.46906 * 209.99864 * 9 7 5
12 12 H 1.48500 * 109.46824 * 329.99563 * 9 7 5
13 13 N 1.46500 * 109.47025 * 295.00364 * 3 2 1
14 14 C 1.34777 * 120.00310 * 84.99906 * 13 3 2
15 15 O 1.21506 * 119.99910 * 0.02562 * 14 13 3
16 16 C 1.48158 * 119.99989 * 180.02562 * 14 13 3
17 17 C 1.39973 * 120.89265 * 359.97438 * 16 14 13
18 18 C 1.37985 * 119.13792 * 180.02562 * 17 16 14
19 19 N 1.31909 * 120.97779 * 359.74885 * 18 17 16
20 20 C 1.32193 * 121.96487 * 0.52359 * 19 18 17
21 21 O 1.35684 * 119.62148 * 179.75517 * 20 19 18
22 22 C 1.35899 * 117.99796 * 5.55404 * 21 20 19
23 23 C 1.38742 * 120.05914 * 69.99654 * 22 21 20
24 24 C 1.38137 * 119.94539 * 179.97438 * 23 22 21
25 25 C 1.38278 * 120.05214 * 359.97438 * 24 23 22
26 26 C 1.38267 * 120.11906 * 0.29760 * 25 24 23
27 27 C 1.38145 * 120.05446 * 359.44532 * 26 25 24
28 28 C 1.38905 * 120.75659 * 359.47245 * 20 19 18
29 29 H 1.08994 * 109.47068 * 59.99761 * 1 2 3
30 30 H 1.08995 * 109.47200 * 180.02562 * 1 2 3
31 31 H 1.09004 * 109.46513 * 299.99882 * 1 2 3
32 32 H 1.08999 * 109.46728 * 239.99689 * 2 1 3
33 33 H 1.09004 * 109.47010 * 120.00165 * 2 1 3
34 34 H 0.96991 * 120.00083 * 180.02562 * 8 7 5
35 35 H 0.97003 * 120.00144 * 264.99887 * 13 3 2
36 36 H 1.07993 * 120.43051 * 0.02562 * 17 16 14
37 37 H 1.07995 * 119.51344 * 180.02562 * 18 17 16
38 38 H 1.08005 * 120.03177 * 359.95663 * 23 22 21
39 39 H 1.07997 * 119.97635 * 180.02562 * 24 23 22
40 40 H 1.08002 * 119.94000 * 180.02562 * 25 24 23
41 41 H 1.07994 * 119.97211 * 179.70160 * 26 25 24
42 42 H 1.07993 * 120.02901 * 180.25188 * 27 26 25
43 43 H 1.07995 * 120.53049 * 180.27187 * 28 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 1 1.6055 1.9815 0.8418
5 6 3.5420 1.4442 0.1238
6 1 4.1473 1.8888 -0.6524
7 6 4.1434 0.8783 1.2279
8 7 3.4063 0.3373 2.1733
9 14 6.0051 0.8811 1.3817
10 1 6.4418 2.1140 2.0849
11 1 6.4397 -0.3100 2.1548
12 1 6.6136 0.8415 0.0277
13 7 1.6525 2.0974 -1.2518
14 6 0.4352 2.6644 -1.3669
15 8 -0.3406 2.6327 -0.4323
16 6 0.0431 3.3263 -2.6331
17 6 0.9222 3.3742 -3.7213
18 6 0.5197 4.0004 -4.8831
19 7 -0.6773 4.5461 -4.9807
20 6 -1.5379 4.5293 -3.9774
21 8 -2.7551 5.1096 -4.1283
22 6 -3.0852 5.5897 -5.3560
23 6 -3.3334 4.7123 -6.4016
24 6 -3.6693 5.2028 -7.6485
25 6 -3.7588 6.5672 -7.8548
26 6 -3.5065 7.4440 -6.8159
27 6 -3.1754 6.9584 -5.5657
28 6 -1.2127 3.9193 -2.7726
29 1 -0.3633 0.5138 -0.8899
30 1 -0.3633 -1.0276 0.0005
31 1 -0.3632 0.5139 0.8901
32 1 1.8934 -0.5139 -0.8900
33 1 1.8934 -0.5139 0.8900
34 1 3.8294 -0.0605 2.9501
35 1 2.2720 2.1231 -1.9978
36 1 1.9027 2.9269 -3.6524
37 1 1.1930 4.0406 -5.7265
38 1 -3.2637 3.6465 -6.2410
39 1 -3.8630 4.5202 -8.4627
40 1 -4.0220 6.9488 -8.8303
41 1 -3.5724 8.5092 -6.9808
42 1 -2.9824 7.6435 -4.7535
43 1 -1.9203 3.9039 -1.9569
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000545155213.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 15:05:45
Heat of formation + Delta-G solvation = -20.839464 kcal
Electronic energy + Delta-G solvation = -26336.126783 eV
Core-core repulsion = 22539.274301 eV
Total energy + Delta-G solvation = -3796.852481 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 326.142 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-42.25886 -41.06772 -39.93712 -38.47077 -37.02483 -34.54571 -33.81286 -32.71206
-32.08537 -31.89742 -30.51526 -29.04646 -26.22816 -25.04710 -24.50335 -23.64683
-23.56429 -22.05479 -21.30437 -20.21314 -19.01004 -18.29220 -17.58679 -17.38759
-17.20871 -17.00283 -16.72506 -16.36354 -16.19597 -15.92097 -15.25077 -15.21918
-14.94715 -14.82588 -14.58555 -14.39732 -13.97502 -13.70329 -13.49693 -13.26897
-13.18359 -13.01082 -12.89214 -12.69319 -12.55946 -12.18767 -12.08175 -11.88612
-11.61511 -11.25204 -11.07146 -11.05006 -10.70054 -10.53436 -9.95354 -9.93343
-9.73521 -9.52242 -8.15956 -6.33392 -0.41552 -0.05435 0.16620 0.39523
1.46746 1.47125 1.57459 1.80653 1.89399 2.30747 2.50780 2.73313
2.88382 3.14143 3.20216 3.61398 3.83297 3.89545 3.94823 3.95084
4.04407 4.23263 4.46769 4.47754 4.51962 4.55002 4.57028 4.64466
4.73298 4.75440 4.98278 5.03791 5.04607 5.23497 5.28180 5.40244
5.40818 5.42837 5.49300 5.52888 5.58932 5.76935 5.84929 5.88318
6.14589 6.34081 6.68360 6.72810 6.84198 7.28871 7.44391 8.89521
Molecular weight = 326.14amu
Principal moments of inertia in cm(-1)
A = 0.027917 B = 0.002346 C = 0.002264
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1002.739968 B =11932.873282 C =12366.951985
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.126 4.126
2 C -0.121 4.121
3 C 0.277 3.723
4 H 0.001 0.999
5 C -0.547 4.547
6 H 0.076 0.924
7 C 0.016 3.984
8 N -0.914 5.914
9 Si 0.970 3.030
10 H -0.280 1.280
11 H -0.286 1.286
12 H -0.258 1.258
13 N -0.688 5.688
14 C 0.541 3.459
15 O -0.574 6.574
16 C -0.055 4.055
17 C -0.163 4.163
18 C 0.146 3.854
19 N -0.520 5.520
20 C 0.304 3.696
21 O -0.263 6.263
22 C 0.068 3.932
23 C -0.132 4.132
24 C -0.107 4.107
25 C -0.116 4.116
26 C -0.105 4.105
27 C -0.133 4.133
28 C -0.145 4.145
29 H 0.040 0.960
30 H 0.047 0.953
31 H 0.026 0.974
32 H 0.045 0.955
33 H 0.074 0.926
34 H 0.265 0.735
35 H 0.406 0.594
36 H 0.171 0.829
37 H 0.210 0.790
38 H 0.117 0.883
39 H 0.151 0.849
40 H 0.158 0.842
41 H 0.156 0.844
42 H 0.130 0.870
43 H 0.139 0.861
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.845 10.285 -22.832 26.557
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.183 4.183
2 C -0.160 4.160
3 C 0.174 3.826
4 H 0.019 0.981
5 C -0.585 4.585
6 H 0.094 0.906
7 C -0.184 4.184
8 N -0.553 5.553
9 Si 0.795 3.205
10 H -0.206 1.206
11 H -0.212 1.212
12 H -0.182 1.182
13 N -0.337 5.337
14 C 0.327 3.673
15 O -0.455 6.455
16 C -0.066 4.066
17 C -0.184 4.184
18 C -0.010 4.010
19 N -0.243 5.243
20 C 0.128 3.872
21 O -0.169 6.169
22 C 0.026 3.974
23 C -0.150 4.150
24 C -0.125 4.125
25 C -0.134 4.134
26 C -0.123 4.123
27 C -0.151 4.151
28 C -0.167 4.167
29 H 0.059 0.941
30 H 0.066 0.934
31 H 0.045 0.955
32 H 0.064 0.936
33 H 0.093 0.907
34 H 0.074 0.926
35 H 0.243 0.757
36 H 0.189 0.811
37 H 0.226 0.774
38 H 0.135 0.865
39 H 0.169 0.831
40 H 0.176 0.824
41 H 0.174 0.826
42 H 0.147 0.853
43 H 0.157 0.843
Dipole moment (debyes) X Y Z Total
from point charges -9.803 10.572 -22.541 26.757
hybrid contribution 1.168 -0.634 1.462 1.976
sum -8.635 9.939 -21.079 24.853
Atomic orbital electron populations
1.21700 0.97199 0.99267 1.00137 1.21799 0.93529 0.98996 1.01665
1.18482 0.94015 0.89253 0.80854 0.98083 1.21546 0.91053 1.39032
1.06880 0.90595 1.25764 1.03282 0.94358 0.95043 1.70042 1.37104
1.38285 1.09831 0.85371 0.79127 0.77283 0.78713 1.20621 1.21165
1.18161 1.46160 1.14666 1.54841 1.18028 1.18470 0.82587 0.79027
0.87167 1.90742 1.52484 1.60895 1.41367 1.20198 0.94405 0.97464
0.94534 1.22573 1.01550 1.01517 0.92735 1.23085 0.90473 0.89821
0.97640 1.67316 1.05276 1.21305 1.30445 1.19697 0.85324 0.92008
0.90183 1.84598 1.29371 1.71391 1.31545 1.18915 1.01692 0.93031
0.83722 1.21396 1.00656 0.99487 0.93507 1.21341 0.98390 0.96743
0.95979 1.21635 0.98443 0.92895 1.00419 1.21372 0.98102 1.01630
0.91207 1.21338 1.01640 0.93023 0.99147 1.21013 0.97831 1.00389
0.97478 0.94098 0.93444 0.95473 0.93645 0.90723 0.92589 0.75694
0.81141 0.77379 0.86504 0.83122 0.82440 0.82625 0.85250 0.84325
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -5.64 8.51 71.99 0.61 -5.03 16
2 C -0.12 -5.83 5.45 30.60 0.17 -5.66 16
3 C 0.28 13.80 2.24 44.24 0.10 13.90 16
4 H 0.00 0.08 7.58 -2.39 -0.02 0.06 16
5 C -0.55 -27.84 8.73 25.60 0.22 -27.61 16
6 H 0.08 3.56 7.74 -2.91 -0.02 3.54 16
7 C 0.02 0.83 5.29 84.65 0.45 1.28 16
8 N -0.91 -51.29 11.29 21.45 0.24 -51.05 16
9 Si 0.97 40.90 29.54 68.60 2.03 42.93 16
10 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16
11 H -0.29 -12.02 7.11 99.48 0.71 -11.31 16
12 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16
13 N -0.69 -27.37 4.98 -448.69 -2.23 -29.60 16
14 C 0.54 21.61 6.36 86.88 0.55 22.16 16
15 O -0.57 -27.62 13.58 -3.73 -0.05 -27.67 16
16 C -0.06 -1.73 5.91 -19.90 -0.12 -1.85 16
17 C -0.16 -3.69 9.61 22.63 0.22 -3.47 16
18 C 0.15 2.87 11.17 84.62 0.94 3.81 16
19 N -0.52 -13.13 8.98 -309.11 -2.77 -15.91 16
20 C 0.30 8.84 7.32 84.80 0.62 9.46 16
21 O -0.26 -7.65 9.97 -33.45 -0.33 -7.98 16
22 C 0.07 1.66 5.25 22.51 0.12 1.78 16
23 C -0.13 -2.78 9.39 22.37 0.21 -2.57 16
24 C -0.11 -1.59 10.04 22.26 0.22 -1.37 16
25 C -0.12 -1.43 10.04 22.29 0.22 -1.20 16
26 C -0.11 -1.49 10.04 22.25 0.22 -1.26 16
27 C -0.13 -2.68 9.99 22.37 0.22 -2.46 16
28 C -0.15 -4.63 9.61 22.75 0.22 -4.41 16
29 H 0.04 1.78 5.64 -2.39 -0.01 1.76 16
30 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16
31 H 0.03 1.31 7.85 -2.38 -0.02 1.29 16
32 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16
33 H 0.07 4.03 5.95 -2.38 -0.01 4.02 16
34 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16
35 H 0.41 13.11 6.68 -92.71 -0.62 12.49 16
36 H 0.17 2.92 6.53 -2.91 -0.02 2.90 16
37 H 0.21 2.23 8.06 -2.91 -0.02 2.21 16
38 H 0.12 2.52 8.06 -2.91 -0.02 2.49 16
39 H 0.15 1.44 8.06 -2.91 -0.02 1.41 16
40 H 0.16 0.90 8.06 -2.91 -0.02 0.88 16
41 H 0.16 1.28 8.06 -2.91 -0.02 1.25 16
42 H 0.13 2.46 8.06 -2.91 -0.02 2.43 16
43 H 0.14 4.73 7.74 -2.91 -0.02 4.71 16
Total: -1.00 -69.43 363.26 2.51 -66.93
By element:
Atomic # 1 Polarization: 26.42 SS G_CDS: 0.42 Total: 26.84 kcal
Atomic # 6 Polarization: -9.70 SS G_CDS: 5.21 Total: -4.49 kcal
Atomic # 7 Polarization: -91.79 SS G_CDS: -4.77 Total: -96.56 kcal
Atomic # 8 Polarization: -35.27 SS G_CDS: -0.38 Total: -35.65 kcal
Atomic # 14 Polarization: 40.90 SS G_CDS: 2.03 Total: 42.93 kcal
Total: -69.43 2.51 -66.93 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000545155213.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 46.086 kcal
(2) G-P(sol) polarization free energy of solvation -69.434 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.348 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.508 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.926 kcal
(6) G-S(sol) free energy of system = (1) + (5) -20.839 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds